ID: uc001rpg.2_intron_11_0_chr12_46761124_r.5p
GENE: (4)
chr12:46764095-46764344-


(4)
B-CELL 		(2)
BRAIN 		(2)
BREAST 		(14)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(3)
HELA 		(2)
LIVER 		(2)
OTHER 		(19)
SKIN 		(1)
XRN.ip

Sense strand
ATCCTTGGGCTTTCTTATGCCATGGCTAATACTGGAATTGCTCTTTTTATGTAAGTATGTGTAAGTAGTGAGTCTGCCATGCAGGGCAGTTACTATGGTAAAACATATTTTGGCTCCAGAAACTGAATTTACAGTTGGAGTAGCTGACTCAAAAGTTACTTGCTTAAAATTAAAAGTATGAGAAACCCCAAAAAATCTCTTTATTCTACTACATACTGCACAATATCAAGAAAGCCAACTAGAAAAAAAT
....................................................((((((((....(((((((..(((((......))))))))))))......))))))))..((((((...((((......)))))))))).............................................................................................................
..................................................51...............................................................................................148....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029129(GSM416758)
SW480. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM532874(GSM532874)
G699T. (cervix)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040032(GSM532917)
G603N. (cervix)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................GTAAGTATGTGTAAGTAG......................................................................................................................................................................................18124.0024.0018.004.00---------1.00------------------------1.00--------------
............................ATACTGGAATTGCTCTTT............................................................................................................................................................................................................1815.005.00------1.00-2.00-----------1.00-----------------1.00------------
..................................................GTAAGTATGTGTAAGTAGAAA...................................................................................................................................................................................2115.0024.00--5.00------------------------------------------------
................................................ATGTAAGTATGTGTAAGTAG......................................................................................................................................................................................2014.004.00-4.00-------------------------------------------------
..................................................GTAAGTATGTGTAAGTAGAC....................................................................................................................................................................................2014.0024.00--4.00------------------------------------------------
............................................TTTTATGTAAGTATGTGTAAGTAGT.....................................................................................................................................................................................2513.003.00-3.00-------------------------------------------------
.........................CTAATACTGGAATTGCTCT..............................................................................................................................................................................................................1913.003.00-----3.00---------------------------------------------
................................................................GTAGTGAGTCTGCCATGC........................................................................................................................................................................1813.003.00--3.00------------------------------------------------
............................ATACTGGAATTGCTCTTTT...........................................................................................................................................................................................................1912.002.00------1.00----------------1.00---------------------------
.................................................TGTAAGTATGTGTAAGTAGTGAGTCTGCCATG.........................................................................................................................................................................3212.002.00-------2.00-------------------------------------------
...........................AATACTGGAATTGCTCTTTT...........................................................................................................................................................................................................2012.002.00------1.00--1.00-----------------------------------------
.........................................................................................................................ACTGAATTTACAGTTGGAGTAGC..........................................................................................................2312.002.00---2.00-----------------------------------------------
...........................................................................................................TTTTGGCTCCAGAAACTGA............................................................................................................................1912.002.00-------------1.00--------------1.00----------------------
.....................ATGGCTAATACTGGAATTG..................................................................................................................................................................................................................1921.501.50---0.50--0.50-0.50------------------------------------------
.....................ATGGCTAATACTGGAATTGC.................................................................................................................................................................................................................2021.501.50--0.50-----0.50-----------------------------------0.50------
..................................................GTAAGTATGTGTAAGTAGAA....................................................................................................................................................................................2011.0024.00-1.00-------------------------------------------------
.....................ATGGCTAATACTGGAATTGCT................................................................................................................................................................................................................2111.001.00-------------------------------1.00-------------------
..................................................GTAAGTATGTGTAAGTAGTGAGTC................................................................................................................................................................................2411.001.00-1.00-------------------------------------------------
...........................................................................................................................TGAATTTACAGTTGGAGTAG...........................................................................................................2011.001.00--------------------------------1.00------------------
..........TTTCTTATGCCATGGCT...............................................................................................................................................................................................................................1711.001.00---------------------------------1.00-----------------
.......................GGCTAATACTGGAATTGCTCTTTTTAT........................................................................................................................................................................................................2711.001.00--1.00------------------------------------------------
............................ATACTGGAATTGCTCTTTTT..........................................................................................................................................................................................................2011.001.00----------------------------------1.00----------------
..............................................................................................................................ATTTACAGTTGGAGTAGCTGACTC....................................................................................................2411.001.00-------1.00-------------------------------------------
.........................................................TGTGTAAGTAGTGAGTCTGCCATGCAGGGCA..................................................................................................................................................................3111.001.00-----------1.00---------------------------------------
........................................................................................................................................................................................................TTATTCTACTACATACTGCACTATA.........................251.000.00------------------------1.00--------------------------
........................................................................................................ATATTTTGGCTCCAGAAACT..............................................................................................................................2011.001.00----1.00----------------------------------------------
............................................................................................................................................................................AAAGTATGAGAAACCCCAAA..........................................................2011.001.00----1.00----------------------------------------------
...........................................................................................................................TGAATTTACAGTTGGAGTAGCT.........................................................................................................2211.001.00---------------1.00-----------------------------------
..........................................................................................................................CTGAATTTACAGTTGGAGTAGC..........................................................................................................2211.001.00---------1.00-----------------------------------------
.........................................................................................................................ACTGAATTTACAGTTGGAGTAGCTGACTC....................................................................................................2911.001.00---------------------1.00-----------------------------
.....................ATGGCTAATACTGGAATTGCTCTTT............................................................................................................................................................................................................2511.001.00-1.00-------------------------------------------------
...........................................................................................................................................................................AAAAGTATGAGAAACCACA............................................................191.000.00----1.00----------------------------------------------
..............................................................................ATGCAGGGCAGTTACTATGGTAAAAC..................................................................................................................................................2611.001.00---1.00-----------------------------------------------
.................TGCCATGGCTAATACTGGAATTGCTCTTTTT..........................................................................................................................................................................................................3111.001.00------------1.00--------------------------------------
.................................GGAATTGCTCTTTTTATAATT....................................................................................................................................................................................................211.000.00-------------------------1.00-------------------------
.................................................................................CAGGGCAGTTACTATGGTAAAACATTTT.............................................................................................................................................281.000.00-----1.00---------------------------------------------
..........................................................GTGTAAGTAGTGAGTCTGCCATGCAGG.....................................................................................................................................................................2711.001.00----------------------------------------1.00----------
..................................................GTAAGTATGTGTAAGTAGTGAGTCTGC.............................................................................................................................................................................2711.001.00-1.00-------------------------------------------------
...................................................................................................................................CAGTTGGAGTAGCTGACTCAAAAG...............................................................................................2411.001.00----1.00----------------------------------------------
................................TGGAATTGCTCTTTTTAT........................................................................................................................................................................................................1811.001.00----------------------1.00----------------------------
......................................................................................................................................................................................................CTTTATTCTACTACATACTGCACAATATA.......................291.000.00---1.00-----------------------------------------------
...............................................................AGTAGTGAGTCTGCCATGCAGG.....................................................................................................................................................................2211.001.00----------1.00----------------------------------------
..................................................GTAAGTATGTGTAAGTAGTGAGTCG...............................................................................................................................................................................2511.001.00-1.00-------------------------------------------------
........................................................................................................................AACTGAATTTACAGTTGGAGTAGCTGAC......................................................................................................2811.001.00---------------1.00-----------------------------------
.....................ATGGCTAATACTGGAATTGCTC...............................................................................................................................................................................................................2211.001.00----1.00----------------------------------------------
..........................TAATACTGGAATTGCTCTTT............................................................................................................................................................................................................2011.001.00-1.00-------------------------------------------------
.....................................................................................GCAGTTACTATGGTAAAACATAT..............................................................................................................................................2311.001.00-------------------------------------1.00-------------
........................................................................................................ATATTTTGGCTCCAGAAACTGAATTTA.......................................................................................................................2711.001.00-------------1.00-------------------------------------
...........................................................................................................TTTTGGCTCCAGAAACTG.............................................................................................................................1811.001.00---------------------------------------1.00-----------
.......................GGCTAATACTGGAATTGCTATTT............................................................................................................................................................................................................231.000.00--------------------------1.00------------------------
...............TATGCCATGGCTAATACTGGAATT...................................................................................................................................................................................................................2411.001.00----1.00----------------------------------------------
..................................................GTAAGTATGTGTAAGTAGTGAGTCTG..............................................................................................................................................................................2611.001.00-------------------------------------------1.00-------
............................................................................................CTATGGTAAAACATATTTTGGCTCCAGAAACTG.............................................................................................................................3311.001.00-----------------1.00---------------------------------
...........................................................................................................................TGAATTTACAGTTGGAGTAGCTGACTCA...................................................................................................2811.001.00----------------1.00----------------------------------
..................................................GTAAGTATGTGTAAGTAGT.....................................................................................................................................................................................1911.001.00--1.00------------------------------------------------
...CTTGGGCTTTCTTATGCCATGGC................................................................................................................................................................................................................................2311.001.00-1.00-------------------------------------------------
............................ATACTGGAATTGCTCTTTTTATAATT....................................................................................................................................................................................................261.000.00--------------1.00------------------------------------
...................................................................................................................................................................TTAAAATTAAAAGTATGAGAAACCC..............................................................2511.001.00---1.00-----------------------------------------------
..............................................................................ATGCAGGGCAGTTACTAT..........................................................................................................................................................1811.001.00----1.00----------------------------------------------
..............................................................................ATGCAGGGCAGTTACTATGGTA......................................................................................................................................................2211.001.00--------------1.00------------------------------------
.............................................................................................................TTGGCTCCAGAAACTGAA...........................................................................................................................1811.001.00---1.00-----------------------------------------------
................................................................GTAGTGAGTCTGCCATGCAGGGC...................................................................................................................................................................2311.001.00----------1.00----------------------------------------
.........................................................................................................................ACTGAATTTACAGTTGGAGTAGCTGAC......................................................................................................2711.001.00------------------------------1.00--------------------
................................................................................................GGTAAAACATATTTTGGCTCCAGAAAAT..............................................................................................................................281.000.00---1.00-----------------------------------------------
.........................CTAATACTGGAATTGCTCTTTTT..........................................................................................................................................................................................................2311.001.00------------------1.00--------------------------------
......................................................................................................................................................................................................CTTTATTCTACTACATTTTA................................201.000.00-------------------1.00-------------------------------
...........................AATACTGGAATTGCTCTT.............................................................................................................................................................................................................1811.001.00-----------------------------------------1.00---------
......................TGGCTAATACTGGAATTG..................................................................................................................................................................................................................1820.500.50------0.50--------------------------------------------
.......................................................................................................................................TGGAGTAGCTGACTCAA..................................................................................................1730.330.33----------------------------------------------0.33----
..............................ACTGGAATTGCTCTTT............................................................................................................................................................................................................1640.250.25-----------------------------------------------0.25---
.........................CTAATACTGGAATTGC.................................................................................................................................................................................................................1640.250.25------------------------------------------------0.25--
................................................................................................................................TTACAGTTGGAGTAG...........................................................................................................1550.200.20-------------------------------------------------0.20-
...................CCATGGCTAATACTGG.......................................................................................................................................................................................................................1660.170.17--------------------------------------------------0.17

Antisense strand
ATCCTTGGGCTTTCTTATGCCATGGCTAATACTGGAATTGCTCTTTTTATGTAAGTATGTGTAAGTAGTGAGTCTGCCATGCAGGGCAGTTACTATGGTAAAACATATTTTGGCTCCAGAAACTGAATTTACAGTTGGAGTAGCTGACTCAAAAGTTACTTGCTTAAAATTAAAAGTATGAGAAACCCCAAAAAATCTCTTTATTCTACTACATACTGCACAATATCAAGAAAGCCAACTAGAAAAAAAT
....................................................((((((((....(((((((..(((((......))))))))))))......))))))))..((((((...((((......)))))))))).............................................................................................................
..................................................51...............................................................................................148....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029129(GSM416758)
SW480. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM532874(GSM532874)
G699T. (cervix)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040032(GSM532917)
G603N. (cervix)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
..........................................................................................................................................................................................CCCAAAAAATCTCTTAGCA............................................. 191.000.00-----------------------------------1.00---------------
........................................................................................................................................................................................ACCCCAAAAAATCTCTTCG............................................... 191.000.00------------1.00--------------------------------------
..............................................................AAGTAGTGAGTCTGCCCCAA........................................................................................................................................................................ 201.000.00-----------------------------1.00---------------------
................................................................................................................................................................................................................CTACATACTGCACAAAAT........................ 181.000.00---------------------------1.00-----------------------
...............................................TATGTAAGTATGTGTCGGG........................................................................................................................................................................................ 191.000.00-------1.00-------------------------------------------
.....................................................................................................................................................................................................TCTTTATTCTACTACAATT.................................. 191.000.00------------------------------------------1.00--------
....................................................................................................................................................................................AGAAACCCCAAAAAATTAT................................................... 191.000.00-----1.00---------------------------------------------
.GGCATAAGAAAGCCCAAGGA..................................................................................................................................................................................................................................... 2020.500.50----0.50----------------------------------------------
..........................................CATACTTACATAAAAAG............................................................................................................................................................................................... 1730.330.33---------------------------------------------0.33-----