ID: uc001rjb.2_intron_15_0_chr12_29911711_r.5p
GENE: (2)
chr12:29920631-29920880-


(1)
B-CELL 		(4)
BRAIN 		(4)
BREAST 		(9)
CELL-LINE 		(1)
FIBROBLAST 		(3)
HEART 		(2)
HELA 		(7)
OTHER 		(13)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CTTTTGTAACGGCATTGCTTTTTGCTGTACATCCTATTCATACTGAGGCGGTAAGTGTAATTGGATCTCAGTGAAATAACGAATATGAATGTGTGTATGTATACGTGTATACGTGTATACACACACATATATATACATGTAAATATGTGTGTATATGTAGATATGTGTGTGTATATAGATATATACATGTAAACTAAGCTGATCTTTTTTCCTTTTCAAAAACATATGAGTTCACTCTATTAAAGTGTTT
.................................................................................................................(((((((((((((((((...((((((((.((....)).)))))))).))))))))))))))))).........................................................................
.................................................................................................................114..................................................................183.................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR033724(GSM497069)
L428 cell line (L428). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189783SRR189784SRR189787SRR189786SRR390723(GSM850202)
total small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR343334SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191581(GSM715691)
104genomic small RNA (size selected RNA from . (breast)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
.............................................................................................................................................................TAGATATGTGTGTGTATATAGA.......................................................................22110.0010.00--4.00---------------1.00---1.00--1.00---1.00------------1.001.00-
..........................................................................................................................................................ATGTAGATATGTGTGTGTATAT..........................................................................2219.009.00-1.00-----1.00-1.00----1.00--1.00--1.001.00---------1.00----1.00--------
.............................................................................................................................................................TAGATATGTGTGTGTATATAGT.......................................................................2218.005.003.00--4.00-------------1.00---------------------------
.......................................................................................................................................................TATATGTAGATATGTGTGTGTAT............................................................................2318.008.00-------2.002.002.00----1.00------------------1.00-----------
.......................................................................................................................................................TATATGTAGATATGTACG.................................................................................186.000.006.00--------------------------------------------
.............................................................................................................................................................TAGATATGTGTGTGTATATAG........................................................................2115.005.002.00------------------1.00------1.00---1.00--------------
..........................................................................................................................................................ATGTAGATATGTGTGTGTAT............................................................................2014.004.00-2.00-----------------------------------1.00--1.00----
.............................................................................................................................................................TAGATATGTGTGTGTATACAGT.......................................................................223.000.00------3.00--------------------------------------
.......................................................................................................................................................TATATGTAGATATGTGTGTGTA.............................................................................2212.002.00-2.00-------------------------------------------
............................................................................................................................................................GTAGATATGTGTGTGTATATAG........................................................................2212.002.00--1.00-------------------------------1.00----------
..........................................................................................................................................................ATGTAGATATGTGTGTGTATT...........................................................................2112.004.00-----------1.00-----------------------------1.00---
..........................................................................................................................................................ATGTAGATATGTGTGTGTATATT.........................................................................2312.009.00-------------2.00-------------------------------
.............................................................................................................................................................TAGATATGTGTGTGTATATAGC.......................................................................2212.005.00-----2.00---------------------------------------
..........................................................................................................................................................ATGTAGATATGTGTGTGTAA............................................................................202.000.00------------2.00--------------------------------
.TTTTGTAACGGCATTGCTTTTTG..................................................................................................................................................................................................................................2311.001.00-----------1.00---------------------------------
..................................................GTAAGTGTAATTGGATCTCAGTGAAATA............................................................................................................................................................................2811.001.00--------------------------------1.00------------
........................................................................................................................................................ATATGTAGATATGTGTGTGTATATA.........................................................................2511.001.00--------------------------------------------1.00
........................................................................................................................................................ATATGTAGATATGTGTGTGTATAA..........................................................................241.000.00--------1.00------------------------------------
...........................................................................................................................................................TGTAGATATGTGTGTGTATATAG........................................................................2311.001.00----------------1.00----------------------------
..........................................................................................................................................................ATGTAGATATGTGTGTGTATA...........................................................................2111.001.00----------------------------1.00----------------
......................................................................................................................ACACACACATATATATCCCG................................................................................................................201.000.00---------------------------1.00-----------------
.........................................................................................................................................................TATGTAGATATGTGTGTGTATAT..........................................................................2311.001.00---------------------------------------1.00-----
.......................................................................................................................................................TATATGTAGATATGTACT.................................................................................181.000.001.00--------------------------------------------
............................................................................................................................................................GTAGATATGTGTGTGTATATAGA.......................................................................2311.001.00----------------1.00----------------------------
....................................................................................................................ATACACACACATATATATCTTC................................................................................................................221.000.001.00--------------------------------------------
........................................................................................................................................................ATATGTAGATATGTGTGTGTATAT..........................................................................2411.001.00-1.00-------------------------------------------
.............................................................................................................................................................TAGATATGTGTGTGTATACAG........................................................................211.000.00----1.00----------------------------------------
..........................................................................................................................................................ATGTAGATATGTGTGACAA.............................................................................191.000.00--------------------------------------1.00------
...................................................................................................................................................................TGTGTGTGTATATAGATATCTT.................................................................221.000.00----1.00----------------------------------------
..........................................................................................................................................................ATGTAGATATGTGTGTGTATATA.........................................................................2311.001.00-1.00-------------------------------------------
..................................TATTCATACTGAGGCG........................................................................................................................................................................................................1611.001.00--1.00------------------------------------------
.................................................................................................................................TATATACATGTAAATATTG......................................................................................................191.000.001.00--------------------------------------------
.............................................................................................................................................................TAGATATGTGTGTGTATATAGG.......................................................................2211.005.00-----------------------1.00---------------------
....TGTAACGGCATTGCTTTTTG..................................................................................................................................................................................................................................2011.001.00-----------------------------------1.00---------
.........................................................................................................................CACACATATATATACATCTGT............................................................................................................211.000.001.00--------------------------------------------
...........................................................................................................................................................TGTAGATATGTGTGTGTATAAT.........................................................................221.000.00------------------------1.00--------------------
.......................................................................................................................................................TATATGTAGATATGTGTGTGTAC............................................................................2311.002.00-----1.00---------------------------------------
..............................................................................................................................................................................................AAACTAAGCTGATCTCCAA.........................................191.000.00----1.00----------------------------------------
.......................................................................................................................................................TATATGTAGATATGTGTGTGT..............................................................................2140.250.25-0.25-------------------------------------------
............................................................................................................................................................GTAGATATGTGTGTGTATATA.........................................................................2180.250.25---0.25-----------------------------------------
.................................................................................................................................TATATACATGTAAATATG.......................................................................................................1880.120.120.12--------------------------------------------

Antisense strand
CTTTTGTAACGGCATTGCTTTTTGCTGTACATCCTATTCATACTGAGGCGGTAAGTGTAATTGGATCTCAGTGAAATAACGAATATGAATGTGTGTATGTATACGTGTATACGTGTATACACACACATATATATACATGTAAATATGTGTGTATATGTAGATATGTGTGTGTATATAGATATATACATGTAAACTAAGCTGATCTTTTTTCCTTTTCAAAAACATATGAGTTCACTCTATTAAAGTGTTT
.................................................................................................................(((((((((((((((((...((((((((.((....)).)))))))).))))))))))))))))).........................................................................
.................................................................................................................114..................................................................183.................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR033724(GSM497069)
L428 cell line (L428). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189783SRR189784SRR189787SRR189786SRR390723(GSM850202)
total small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR343334SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191581(GSM715691)
104genomic small RNA (size selected RNA from . (breast)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
...................................................................................................................................................................................................................................GAGTTCACTCTATTAATG..... 182.000.00---------------2.00-----------------------------
............................................................................................................................................AAATATGTGTGTATATGTATG......................................................................................... 212.000.00----------2.00----------------------------------
................................................................................................................................ATATATACATGTAAATATG....................................................................................................... 191.000.001.00--------------------------------------------
...................................................................................................................................................................TGTGTGTGTATATAGACTGT................................................................... 201.000.001.00--------------------------------------------
........................................................................................................................................................ATATGTAGATATGTGTGTGTGT............................................................................ 221.000.00----1.00----------------------------------------
..........................................................................................................................................................................GTATATAGATATATAGGCT............................................................. 191.000.00-----1.00---------------------------------------
...................................................................................................................................................................TGTGTGTGTATATAGAGATT................................................................... 201.000.001.00--------------------------------------------
....................................................................................................................................................................GTGTGTGTATATAGATATT................................................................... 191.000.00------1.00--------------------------------------