ID: uc001rih.2_intron_6_0_chr12_27890542_f.5p
GENE: (7)
chr12:27890492-27890741+


(1)
CELL-LINE
(2)
HEART
(7)
HELA
(1)
LIVER
(1)
OTHER
(3)
SKIN
(1)
XRN.ip

Sense strand
ATTACGATTATGCAGTGTATCTACTAACAGTGTTATACCATGAGTCTTGGGTAAGTGTGTGTGAATATTTAATGATTTTGTCATTGTAATTTAGATGATGTTAACCTTTCAAAATACTCTTTGTGGCAAGTACTCAACTGAGTATTTTGTGAACTGCTGAATAATCTAAGTATGTATGAAATGTCATAGGTAGCTTCTACTGACTTTAAAAGTAAAGGTCTTGAAATAGGATTATTCAGTTCATCTCAGG
.....................................................................(((((((...)))))))..((((((.....(((.......((((((((((.(((.((......)))))..))))))))))..)))..))))))........................................................................................
..............................................................63.....................................................................................................166..................................................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)
SRR189782SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
..........................................................................................TTAGATGATGTTAACCTTTCAAAATACTCTTTGTGGCAAGTACTCAACTGAGTATTTTGTGAACTGCTGAAT........................................................................................72185.0085.0047.0016.0018.003.001.00----------
.........................................................................................TTTAGATGATGTTAACCTTTCAAAATACTCTTTGTGGCAAGTACTCAACTGAGTATTTTGTGAACTGCTGAAT........................................................................................73169.0069.0037.0021.007.002.001.00------1.00---
..................................................................................................TGTTAACCTTTCAAAATACTCTTTGTGGCAAGTACTCAACTGAGTATTTTGTGAACTGCTGAAT........................................................................................6412.002.00--2.00------------
...........................................................................................................................................GAGTATTTTGTGAACTGCTGAAT........................................................................................2311.001.00----------1.00----
..................................................................................................................................TACTCAACTGAGTATTTTGT....................................................................................................2011.001.00-----1.00---------
................................................................................................................................................TTTTGTGAACTGCTGAATAATCTA..................................................................................2411.001.00-------------1.00-
...................................................................TTTAATGATTTTGTCATTGTAATT...............................................................................................................................................................2411.001.00---------1.00-----
.......................................................................................................ACCTTTCAAAATACTCTTTGTGGC...........................................................................................................................2411.001.00------------1.00--
..................ATCTACTAACAGTGTTATACCATG................................................................................................................................................................................................................2411.001.00--------1.00------
..........................................................................................TTAGATGATGTTAACCTTTCAAAATA......................................................................................................................................2611.001.00-------1.00-------
.........................................GAGTCTTGGGTAAGTGTG...............................................................................................................................................................................................1811.001.00------1.00--------
..........................ACAGTGTTATACCATG................................................................................................................................................................................................................1630.330.33--------------0.33

Antisense strand
ATTACGATTATGCAGTGTATCTACTAACAGTGTTATACCATGAGTCTTGGGTAAGTGTGTGTGAATATTTAATGATTTTGTCATTGTAATTTAGATGATGTTAACCTTTCAAAATACTCTTTGTGGCAAGTACTCAACTGAGTATTTTGTGAACTGCTGAATAATCTAAGTATGTATGAAATGTCATAGGTAGCTTCTACTGACTTTAAAAGTAAAGGTCTTGAAATAGGATTATTCAGTTCATCTCAGG
.....................................................................(((((((...)))))))..((((((.....(((.......((((((((((.(((.((......)))))..))))))))))..)))..))))))........................................................................................
..............................................................63.....................................................................................................166..................................................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)
SRR189782SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)