uc001rhg.2_intron_52_0_chr12_26875489

AGAATAAGAAACTGTTGGGAGAAATTGTAAAATACAGTAATGTTATACAAGTAAGTATTTTCTCTTAAACGAGGTGAGTATTTTATGTGGAGTTTGTCAGTAAGTTGGCAGGAAAGCCAAACTGCGTTAAAATTTTGAGATACAGGAAGTTTGTTCTTTGATGGGAATTATCGATGTTGTGACGTATTGTGATGTATTCATTTGATATGTGCTGCACTATTCTGTATGTTTAAGAATAAATCTGATTTTA
....................................................((((((((((((......)))).)))))))).....(((((((....(((..(((((......)))))..)))....)))))))....(((((...(((......((((((.....))))))......)))...)))))...........................................................
..................................................51...........................................................................................................................................192........................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR207110(GSM721072)
Nuclear RNA. (cell line)

SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)

DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)

SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)

SRR037937(GSM510475)
293cand2. (cell line)

SRR553575(SRX182781)
source: Kidney. (Kidney)

SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)

SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)

SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)

SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)

GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR189782

SRR037931(GSM510469)
293GFP. (cell line)

DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)

SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)

SRR207116(GSM721078)
Nuclear RNA. (cell line)

SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)

SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)

GSM532872(GSM532872)
G652T. (cervix)

SRR189784

SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)

SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)

SRR207117(GSM721079)
Whole cell RNA. (cell line)

SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)

SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)

SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)

TAX577746(Rovira)
total RNA. (breast)

GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)

SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)

SRR343333(GSM796036)
KSHV (HHV8). (cell line)

GSM416733(GSM416733)
HEK293. (cell line)

SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)

SRR189785

SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)

SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)

TAX577739(Rovira)
total RNA. (breast)

SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)

SRR029127(GSM416756)
A549. (cell line)

TAX577742(Rovira)
total RNA. (breast)

SRR037941(GSM510479)
293DroshaTN. (cell line)

GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)

SRR037939(GSM510477)
293cand5_rep1. (cell line)

SRR038863(GSM458546)
MM603. (cell line)

SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)

TAX577745(Rovira)
total RNA. (breast)

SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)

SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)

TAX577743(Rovira)
total RNA. (breast)

SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)

SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)

.........................................................................................................................................................................ATCGATGTTGTGACGTCGT..............................................................

18.00

2.00

1.00

9.00

2.00

1.00

.........................................................................................................................................................................ATCGATGTTGTGACGTCGTG.............................................................

17.00

2.00

5.00

1.00

2.00

1.00

.........................................................................................................................................................................ATCGATGTTGTGACGTCG...............................................................

9.00

2.00

3.00

1.00

2.00

1.00

..........................................................................................................................................................................TCGATGTTGTGACGTCGTG.............................................................

7.00

0.00

4.00

1.00

................................TACAGTAATGTTATAACT........................................................................................................................................................................................................

5.00

0.00

1.00

2.00

1.00

.........................................................................................................................................................................ATCGATGTTGTGACGTC................................................................

5.00

2.00

1.00

2.00

................................TACAGTAATGTTATAACTG.......................................................................................................................................................................................................

3.00

0.00

1.00

......AGAAACTGTTGGGAGAAAT.................................................................................................................................................................................................................................

2.00

........................................................................................................................................................................TATCGATGTTGTGACG..................................................................

2.00

.GAATAAGAAACTGTTGGGAGA....................................................................................................................................................................................................................................

2.00

...........CTGTTGGGAGAAATTGTAAAATA........................................................................................................................................................................................................................

2.00

.........................................................................................................................................................................ATCGATGTTGTGACG..................................................................

2.00

.........................................................................................................................................................................ATCGATGTTGTGACGT.................................................................

2.00

1.00

..........................................................................................................................................................................TCGATGTTGTGACGTCGG..............................................................

1.00

0.00

1.00

................................TACAGTAATGTTATACCTGG......................................................................................................................................................................................................

1.00

0.00

1.00

....................................................AAGTATTTTCTCTTATTTT...................................................................................................................................................................................

1.00

0.00

1.00

.........................................................................................................................................................................ATCGATGTTGTGACGTAAA..............................................................

1.00

0.00

1.00

.........................................................................................................................................................................ATCGATGTTGTGACGTCTTG.............................................................

1.00

2.00

1.00

........................................................................................................................................................................TATCGATGTTGTGACTAAG...............................................................

1.00

0.00

1.00

..........................................................................................................................................................................TCGATGTTGTGACGTCTC..............................................................

1.00

0.00

1.00

................................TACAGTAATGTTATATCTG.......................................................................................................................................................................................................

1.00

0.00

1.00

.........................................................................................................................................................................ATCGATGTTGTGACGTCGTA.............................................................

1.00

2.00

1.00

................................TACAGTAATGTTATACAAGAC.....................................................................................................................................................................................................

1.00

0.00

1.00

................................TACAGTAATGTTATAAAT........................................................................................................................................................................................................

1.00

0.00

1.00

.........................................................................................................................................................................ATCGATGTTGTGACGTCTTT.............................................................

1.00

2.00

1.00

......AGAAACTGTTGGGAGAAATTG...............................................................................................................................................................................................................................

1.00

......AGAAACTGTTGGGAGAAATTGTAA............................................................................................................................................................................................................................

1.00

..........................................................................................................................................................................TCGATGTTGTGACGTTGTG.............................................................

1.00

0.00

1.00

.........................................................................................................................................................................ATCGATGTTGTGACGTCC...............................................................

1.00

2.00

1.00

...........CTGTTGGGAGAAATTGTAAA...........................................................................................................................................................................................................................

1.00

..................................................................................................AGTAAGTTGGCAGGAAAGC.....................................................................................................................................

1.00

..........................................................................................................................................................................TCGATGTTGTGACGTCGGG.............................................................

1.00

0.00

1.00

.........................................................................................................................................................................ATCGATGTTGTGACGTAGTG.............................................................

1.00

0.00

1.00

..............TTGGGAGAAATTGTAAAATACAGTAATGT...............................................................................................................................................................................................................

1.00

.....AAGAAACTGTTGGGATCGG..................................................................................................................................................................................................................................

1.00

0.00

1.00

.........AACTGTTGGGAGAAATTGTAAAATACAGT....................................................................................................................................................................................................................

1.00

................................................................................................................................................................................TTGTGACGTATTGTGGAG........................................................

1.00

0.00

1.00

..........................................................................................................................................................................TCGATGTTGTGACGTCGTT.............................................................

1.00

0.00

1.00

.........................................................................................................................................................................ATCGATGTTGTGACGGCGT..............................................................

1.00

2.00

1.00

..........................................................................................................................................................................TCGATGTTGTGACGTGGTG.............................................................

1.00

0.00

1.00

..AATAAGAAACTGTTGGGAGAAA..................................................................................................................................................................................................................................

1.00

.........................................................................................................................................................................ATCGATGTTGTGACGTCATG.............................................................

1.00

2.00

1.00

.........................................................................................................................................................................ATCGATGTTGTGACGTCGTT.............................................................

1.00

2.00

1.00

..............................................................................TATTTTATGTGGAGTTTGTCAGT.....................................................................................................................................................

1.00

..AATAAGAAACTGTTGGG.......................................................................................................................................................................................................................................

0.50

....TAAGAAACTGTTGGG.......................................................................................................................................................................................................................................

0.17

AGAATAAGAAACTGTTGGGAGAAATTGTAAAATACAGTAATGTTATACAAGTAAGTATTTTCTCTTAAACGAGGTGAGTATTTTATGTGGAGTTTGTCAGTAAGTTGGCAGGAAAGCCAAACTGCGTTAAAATTTTGAGATACAGGAAGTTTGTTCTTTGATGGGAATTATCGATGTTGTGACGTATTGTGATGTATTCATTTGATATGTGCTGCACTATTCTGTATGTTTAAGAATAAATCTGATTTTA ....................................................((((((((((((......)))).)))))))).....(((((((....(((..(((((......)))))..)))....)))))))....(((((...(((......((((((.....))))))......)))...)))))........................................................... ..................................................51...........................................................................................................................................192........................................................	Size	Total Norm	SRR207110(GSM721072) Nuclear RNA. (cell line)	SRR039619(GSM531982) HBV(+) HCC Tissue Sample 1. (liver)	DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela)	SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver)	SRR037937(GSM510475) 293cand2. (cell line)	SRR553575(SRX182781) source: Kidney. (Kidney)	SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line)	SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver)	SRR326282(GSM769512) "Dicer mRNA was knocked down using siDicer, t. (cell line)	SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR094129(GSM651905) small RNA(18-35nt)small RNA deep sequencing o. (uterus)	SRR033722(GSM497067) KMS12 cell line (KMS12). (B cell)	GSM450607(GSM450607) miRNA sequencing raw reads from post-mortem s. (brain)	SRR189782	SRR037931(GSM510469) 293GFP. (cell line)	DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela)	SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line)	SRR207116(GSM721078) Nuclear RNA. (cell line)	SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line)	SRR039624(GSM531987) HBV(-) HCV(-) Adjacent Tissue Sample. (liver)	GSM532872(GSM532872) G652T. (cervix)	SRR189784	SRR039621(GSM531984) HBV(+) HCC Tissue Sample 2. (liver)	SRR330912(SRX091750) tissue: normal skindisease state: normal. (skin)	SRR207117(GSM721079) Whole cell RNA. (cell line)	SRR330914(SRX091752) tissue: normal skindisease state: normal. (skin)	SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver)	SRR039620(GSM531983) HBV(+) Adjacent Tissue Sample 2. (liver)	TAX577746(Rovira) total RNA. (breast)	GSM450604(GSM450604) miRNA sequencing raw reads from post-mortem s. (brain)	SRR094131(GSM651907) small RNA(18-35nt)small RNA deep sequencing o. (uterus)	SRR060984(GSM569188) Human plasma cell [09-001]. (cell line)	SRR343333(GSM796036) KSHV (HHV8). (cell line)	GSM416733(GSM416733) HEK293. (cell line)	SRR039617(GSM531980) HBV(+) Adjacent Tissue Sample 1. (liver)	SRR189785	SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell)	SRR330875(SRX091713) tissue: skin psoriatic involveddisease state:. (skin)	TAX577739(Rovira) total RNA. (breast)	SRR191549(GSM715659) 105genomic small RNA (size selected RNA from . (breast)	SRR029127(GSM416756) A549. (cell line)	TAX577742(Rovira) total RNA. (breast)	SRR037941(GSM510479) 293DroshaTN. (cell line)	GSM450608(GSM450608) miRNA sequencing raw reads from post-mortem s. (brain)	SRR107296(GSM677703) 18-30nt fraction of small RNA. (cell line)	SRR037939(GSM510477) 293cand5_rep1. (cell line)	SRR038863(GSM458546) MM603. (cell line)	SRR330920(SRX091758) tissue: normal skindisease state: normal. (skin)	TAX577745(Rovira) total RNA. (breast)	SRR039637(GSM518474) THP1_total_sRNAs. (cell line)	SRR330859(SRX091697) tissue: skin psoriatic involveddisease state:. (skin)	TAX577743(Rovira) total RNA. (breast)	SRR330874(SRX091712) tissue: skin psoriatic involveddisease state:. (skin)	SRR330871(SRX091709) tissue: skin psoriatic involveddisease state:. (skin)
...............TGGGAGAAATTGTAATGAG........................................................................................................................................................................................................................	19	2.00	-	-	-	-	-	-	-	-	-	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.................................................................................TTTATGTGGAGTTTGTCC.......................................................................................................................................................	18	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-
................................................................................................................................................................................TTGTGACGTATTGTGAAAT.......................................................	19	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
..........................GTAAAATACAGTAATGTTCAGT..........................................................................................................................................................................................................	22	1.00	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-