ID: uc001rgx.2_intron_1_0_chr12_26208380_f.3p
GENE: (2)
chr12:26217231-26217480+


(1)
AGO2.ip
(3)
B-CELL
(3)
BREAST
(7)
CELL-LINE
(4)
CERVIX
(2)
FIBROBLAST
(8)
HEART
(1)
KIDNEY
(2)
LIVER
(2)
OTHER
(28)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
ACATCTTCTGATTTTATGTTGTTACATGTCGTGAGGGGTTTGGTATCTTCAAGTAAAGGTTTTAAAGGAACCTGAACTAGACTCAAACTTGACCCTCTGATGCTAATCGAAAATACACAATCATCAAATGGCATTCTTACTCCATTTTTTAACTATTACATATCCCATTTTGACAAGTTATTCTTACCTTTTTTACATAGGTCGAACTGGAAGGTACACCCTTATAGAGAAATGGAGAGATACTGAAAGA
..........................................................((...(((((....(((.......)))((((((......((((....))))................((((((..........))))))..........................)))))).......)))))...))......................................................
..........................................................59...........................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040016(GSM532901)
G645N. (cervix)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR040007(GSM532892)
G601T. (cervix)
SRR553576(SRX182782)
source: Testis. (testes)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM532880(GSM532880)
G659T. (cervix)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
...............................................................AAAGGAACCTGAACTCTG.........................................................................................................................................................................1890.000.0026.0013.008.00-7.006.004.004.003.002.00-1.00-2.00--2.00---1.001.001.00-1.001.00--1.00--1.00--1.00---1.001.001.00-1.00--------------------
..............................................................TAAAGGAACCTGAACTCTG.........................................................................................................................................................................1918.000.003.003.004.00-1.00---1.001.00-2.00--------------1.00---1.00--1.00-----------------------------
.....................................................................................AACTTGACCCTCTGACCA...................................................................................................................................................18410.500.75-0.25-1.50--------------2.00-0.250.50-1.25---------------------0.750.25-0.500.50-0.250.250.250.250.25-0.250.250.250.250.250.25
.....................................................................................AACTTGACCCTCTGACC....................................................................................................................................................1748.500.75---6.25-----------1.00----0.25--------------------------0.25--0.50-----0.25------
............................................................TTTAAAGGAACCTGAACTAGACTC......................................................................................................................................................................2412.002.00------------2.00--------------------------------------------------
..................................................................................................................................................................................TATTCTTACCTTTTTTCCAG....................................................202.000.00-------------------2.00-------------------------------------------
......................................................................................................................................................................................................AGGTCGAACTGGAAGGTA..................................1812.002.00-----------------2.00---------------------------------------------
......................................................AAAGGTTTTAAAGGAACCTGAA..............................................................................................................................................................................2212.002.00--------------2.00------------------------------------------------
..........................................................................................................................................................................................................CGAACTGGAAGGTACACCCTTATAG.......................2512.002.00----------2.00----------------------------------------------------
...................................................................................................................................................................................................................................AGAAATGGAGAGATACTGAAAAA2311.001.00-----------------------------1.00---------------------------------
.....................................................................................................................................................................................................................................AAATGGAGAGATACTGAAAG.2011.001.00-------------------------------------1.00-------------------------
...................................................................................................................................................................................................................................AGAAATGGAGAGATACTGAAA..2111.001.00--------------------------------1.00------------------------------
.....................................................................................................................................................................................................................................AAATGGAGAGATACTGAAAGA2111.001.00----------1.00----------------------------------------------------
.......................................................................................................................................................................................................GGTCGAACTGGAAGGTACACCC.............................2211.001.00---------------1.00-----------------------------------------------
......................................................................................................................................................................................................AGGTCGAACTGGAAGGTACACCCTTA..........................2611.001.00--------------------------------------------1.00------------------
......................................................................................................................................................................................................AGGTCGAACTGGAAGGTACACCC.............................2311.001.00-------------------------------------------1.00-------------------
.....................................................................................AACTTGACCCTCTGA......................................................................................................................................................1540.750.75---0.25------------------0.25------------------------0.25---------------
........................................................................................................................................................................................................GTCGAACTGGAAGGT...................................1530.330.33--------------------0.33------------------------------------------
.....................................................................................AACTTGACCCTCTGAC.....................................................................................................................................................1640.250.75---0.25-----------------------------------------------------------
.....................................................................................AACTTGACCCTCTGACCC...................................................................................................................................................1840.250.75----------------------------------------------0.25----------------

Antisense strand
ACATCTTCTGATTTTATGTTGTTACATGTCGTGAGGGGTTTGGTATCTTCAAGTAAAGGTTTTAAAGGAACCTGAACTAGACTCAAACTTGACCCTCTGATGCTAATCGAAAATACACAATCATCAAATGGCATTCTTACTCCATTTTTTAACTATTACATATCCCATTTTGACAAGTTATTCTTACCTTTTTTACATAGGTCGAACTGGAAGGTACACCCTTATAGAGAAATGGAGAGATACTGAAAGA
..........................................................((...(((((....(((.......)))((((((......((((....))))................((((((..........))))))..........................)))))).......)))))...))......................................................
..........................................................59...........................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040016(GSM532901)
G645N. (cervix)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR040007(GSM532892)
G601T. (cervix)
SRR553576(SRX182782)
source: Testis. (testes)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM532880(GSM532880)
G659T. (cervix)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
....................................................................................................................ACAATCATCAAATGGCCGA................................................................................................................... 191.000.00-----------------------------------------1.00---------------------
...............................................TTCAAGTAAAGGTTTCTTT........................................................................................................................................................................................ 191.000.00---------------------------1.00-----------------------------------
........TGATTTTATGTTGTTACCAG.............................................................................................................................................................................................................................. 201.000.00------------------------------------1.00--------------------------
.........................................................................................................................................................................TTGACAAGTTATTCTTTC............................................................... 181.000.00-----------------------------------1.00---------------------------
...AACATAAAATCAGAAGA...................................................................................................................................................................................................................................... 1750.200.20------------------------0.20--------------------------------------