uc001rga.2_intron_0_0_chr12_23915532

ATCATGTGATAAAAGATATTCTTCTAAAATGTGATATAAAACCAATTATAATTGAGCAGGTTCAGCTGATGCAACAAGAAAATTTAAGCCTATGACTAATGATTTAAGTATTACATTACATTTTTCTAAAAACTTCACATTAAAAATTGTAAAACTTGAGTCAGCCAAAGACTTTTTTTTTTTTCTTTTTGTATTAACAGGCTCTCATTAACTTTCAAGTGGAAACAAACAAGTATTTTGGCAATACTAA ....................................................................................................................((((.......(((((....(((........))).......(((((.......)))))...))))).......))))......................................................... ............................................................................................................109........................................................................................200................................................	Size	Perfect hit	Total Norm	Perfect Norm	SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189784	SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR343334	DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela)	SRR189785	SRR324841(SRX087285) "Total RNA, no rRNA depletion". (cell line)	SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver)	TAX577589(Rovira) total RNA. (breast)
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTACAG.........................................................	23		15.00	0.00	13.00	1.00	-	-	-	-	1.00	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTG...........................................................	23	2	7.00	7.00	3.00	4.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTACAG........................................................	24		6.00	0.00	2.00	2.00	-	1.00	-	-	-	1.00	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTCGAG.........................................................	23		5.00	0.00	5.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.................................................................................................................CATTACATTTTTCTAATTAG.....................................................................................................................	20		4.00	0.00	-	-	-	-	-	3.00	-	-	-	-	1.00	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTGGC...........................................................	21		4.00	0.00	2.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTAAAG..........................................................	22		4.00	0.00	3.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTAAGG........................................................	24		3.00	0.00	3.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTAATC..........................................................	24		3.00	0.00	1.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTATTG.........................................................	23		3.00	0.00	-	-	-	-	2.00	-	1.00	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTACTG..........................................................	22		3.00	0.00	2.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTGAG.........................................................	25	2	2.50	7.00	1.50	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTGC...........................................................	23		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTGAGG..........................................................	22		2.00	0.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTAAAG........................................................	24		2.00	0.00	-	-	2.00	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................AAGACTTTTTTTTTTTTCTTTTGCC..........................................................	25		2.00	0.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTGCTG........................................................	26	2	2.00	7.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTCTGG.........................................................	23		2.00	0.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................CTTTTTTTTTTTTCTTTTTGTTGGC......................................................	25		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTTGC.........................................................	23		2.00	0.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTTGGG........................................................	24		2.00	0.00	-	2.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTACT..........................................................	22		2.00	0.00	-	-	1.00	1.00	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTTTCC........................................................	24		2.00	0.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTTACT........................................................	24		2.00	0.00	1.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTGGG..........................................................	24		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTCGGC.........................................................	23		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTGG...........................................................	23		2.00	0.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTCTAG.........................................................	23		2.00	0.00	-	-	1.00	-	-	-	1.00	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTTGGC........................................................	24		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTTGCG........................................................	24		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTAGG..........................................................	24		2.00	0.00	-	2.00	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................AAGACTTTTTTTTTTTTCTTTTTTTG.........................................................	26		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTTCAG........................................................	24		2.00	0.00	1.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTGCTG............................................................	22		2.00	0.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTGTATGGG.....................................................	27		2.00	0.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTCCG..........................................................	22		2.00	0.00	1.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTGCTCT.......................................................	25		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................AAGACTTTTTTTTTTTTCTTTTGCTG.........................................................	26		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTGAAG........................................................	24		1.00	0.00	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTCGAG.........................................................	25		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTCCC...........................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................AAGACTTTTTTTTTTTTCTTTTTGGTA........................................................	27		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTAGAG.........................................................	23		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTGTTTC.......................................................	25		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTACTG.........................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTCGAG..........................................................	24		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTGGG...........................................................	21		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTCTTG.........................................................	25		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTCTG.........................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTCCAG.........................................................	23		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
..............................................................................................................................................AAAATTGTAAAACTTGAGTCAGC.....................................................................................	23	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTCCC............................................................	22		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTGC..........................................................	24	2	1.00	7.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTAG..........................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTGGAG.........................................................	25		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..................................................................................................................................................................................TTTTTTCTTTTTGTATGGG.....................................................	19		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTGG............................................................	22		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTGGAC............................................................	22		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTC............................................................	22		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTTTAC........................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
............................................................................................................................................................................TTTTTTTTTTTTCTTTTTGTACG.......................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTTGCT........................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTGTAG...........................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTAA...........................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTGGG.........................................................	25	2	1.00	7.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.........................................................................................................................................................................GACTTTTTTTTTTTTCTTTTGCC..........................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTAAC..........................................................	22		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTCCGG..........................................................	22		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTGGTG..........................................................	22		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTCGC.............................................................	21		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTGGAG............................................................	22		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTCTT.............................................................	21		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTCCC...........................................................	21		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................TTTTTTTTTTTCTTTTTGTATTTG.....................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTATAA........................................................	24		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-
..................................................................................................................................................................................TTTTTTCTTTTTGTACGGG.....................................................	19		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTCGG..........................................................	22		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................CTTTTTTTTTTTTCTTTTTGTATTTG.....................................................	26		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTTGGT........................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................AAGACTTTTTTTTTTTTCTTTTTGG..........................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................AAGACTTTTTTTTTTTTCTTTTTGAG.........................................................	26		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTCG...........................................................	21		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................TTTTTTTTTTTCTTTTTGTCGT.......................................................	22		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................TTTTTTTTTTTCTTTTTGTCGGC......................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTCGC............................................................	22		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTGGCC..........................................................	22		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTCC...........................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTCGT..........................................................	24		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTAACG..........................................................	22		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................AAGACTTTTTTTTTTTTCTTTG.............................................................	22		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTACC..........................................................	22		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................TTTTTTTTTTTCTTTTTGTATGGG.....................................................	24		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTTTGT........................................................	26		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTTTTC........................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..............................................................................................................................................................................TTTTTTTTTTCTTTTTGTATTTGTT...................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTCT.............................................................	21		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTCTAA............................................................	22		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................AAGACTTTTTTTTTTTTCTTTTGCG..........................................................	25		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTAATT.........................................................	23		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
................................................................................................................................................................................TTTTTTTTCTTTTTGTATACTG....................................................	22		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTAGGT..........................................................	22		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................AAGACTTTTTTTTTTTTCTTTTTTGGG........................................................	27		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTAGG.........................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTACG.........................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTTTCG........................................................	24		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTGTATGGG.....................................................	29		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTGGC..........................................................	24		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTAATT...........................................................	23		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTGGT...........................................................	21		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTGACCA.......................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTGCGG.........................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................TTTTTTTTTTTCTTTTTGTATG.......................................................	22		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTCCGG.........................................................	23		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTAAAG.........................................................	23		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTTTGG........................................................	26		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTGTTTTA......................................................	26		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-
..................................................................................................................................................................................TTTTTTCTTTTTGTACCCG.....................................................	19		1.00	0.00	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTCTTT..........................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTCTG...........................................................	23		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
................................................................................................................................................................................................................TAACTTTCAAGTGGAAAC........................	18	2	1.00	1.00	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTTA..........................................................	24		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
............................................................................................................................................................................TTTTTTTTTTTTCTTTTTGTATTTGT....................................................	26		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTCGTC........................................................	26		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................TTTTTTTTTTTCTTTTTGTATTGTG....................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..............................................................................................................................................................................TTTTTTTTTTCTTTTTGTATGGG.....................................................	23		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTCAGG.........................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTGAGG........................................................	24		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
................................................................................................................................................................................TTTTTTTTCTTTTTGTATTCCC....................................................	22		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTGCC.........................................................	25	2	0.50	7.00	0.50	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTGAGGC.......................................................	27	2	0.50	7.00	0.50	-	-	-	-	-	-	-	-	-	-	-	-	-
................................................................................................................................................................................................................TAACTTTCAAGTGGAAACCA......................	20	2	0.50	1.00	-	-	-	-	-	0.50	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTGAGA........................................................	26	2	0.50	7.00	-	0.50	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTGG..........................................................	24	2	0.50	7.00	-	0.50	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTGGGAC.......................................................	27	2	0.50	7.00	-	0.50	-	-	-	-	-	-	-	-	-	-	-	-

ATCATGTGATAAAAGATATTCTTCTAAAATGTGATATAAAACCAATTATAATTGAGCAGGTTCAGCTGATGCAACAAGAAAATTTAAGCCTATGACTAATGATTTAAGTATTACATTACATTTTTCTAAAAACTTCACATTAAAAATTGTAAAACTTGAGTCAGCCAAAGACTTTTTTTTTTTTCTTTTTGTATTAACAGGCTCTCATTAACTTTCAAGTGGAAACAAACAAGTATTTTGGCAATACTAA
....................................................................................................................((((.......(((((....(((........))).......(((((.......)))))...))))).......)))).........................................................
............................................................................................................109........................................................................................200................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189784

SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR343334

DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)

SRR189785

SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)

SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)

TAX577589(Rovira)
total RNA. (breast)

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTACAG.........................................................

15.00

0.00

13.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTG...........................................................

7.00

3.00

4.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTACAG........................................................

6.00

0.00

2.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTCGAG.........................................................

5.00

0.00

5.00

.................................................................................................................CATTACATTTTTCTAATTAG.....................................................................................................................

4.00

0.00

3.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTGGC...........................................................

4.00

0.00

2.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTAAAG..........................................................

4.00

0.00

3.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTAAGG........................................................

3.00

0.00

3.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTAATC..........................................................

3.00

0.00

1.00

2.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTATTG.........................................................

3.00

0.00

2.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTACTG..........................................................

3.00

0.00

2.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTGAG.........................................................

2.50

7.00

1.50

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTGC...........................................................

2.00

0.00

2.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTGAGG..........................................................

2.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTAAAG........................................................

2.00

0.00

2.00

.......................................................................................................................................................................AAGACTTTTTTTTTTTTCTTTTGCC..........................................................

2.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTGCTG........................................................

2.00

7.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTCTGG.........................................................

2.00

0.00

1.00

...........................................................................................................................................................................CTTTTTTTTTTTTCTTTTTGTTGGC......................................................

2.00

0.00

2.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTTGC.........................................................

2.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTTGGG........................................................

2.00

0.00

2.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTACT..........................................................

2.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTTTCC........................................................

2.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTTACT........................................................

2.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTGGG..........................................................

2.00

0.00

2.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTCGGC.........................................................

2.00

0.00

2.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTGG...........................................................

2.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTCTAG.........................................................

2.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTTGGC........................................................

2.00

0.00

2.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTTGCG........................................................

2.00

0.00

2.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTAGG..........................................................

2.00

0.00

2.00

.......................................................................................................................................................................AAGACTTTTTTTTTTTTCTTTTTTTG.........................................................

2.00

0.00

2.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTTCAG........................................................

2.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTGCTG............................................................

2.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTGTATGGG.....................................................

2.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTCCG..........................................................

2.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTGCTCT.......................................................

1.00

0.00

1.00

.......................................................................................................................................................................AAGACTTTTTTTTTTTTCTTTTGCTG.........................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTGAAG........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTCGAG.........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTCCC...........................................................

1.00

0.00

1.00

.......................................................................................................................................................................AAGACTTTTTTTTTTTTCTTTTTGGTA........................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTAGAG.........................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTGTTTC.......................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTACTG.........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTCGAG..........................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTGGG...........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTCTTG.........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTCTG.........................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTCCAG.........................................................

1.00

0.00

1.00

..............................................................................................................................................AAAATTGTAAAACTTGAGTCAGC.....................................................................................

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTCCC............................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTGC..........................................................

1.00

7.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTAG..........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTGGAG.........................................................

1.00

0.00

1.00

..................................................................................................................................................................................TTTTTTCTTTTTGTATGGG.....................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTGG............................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTGGAC............................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTC............................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTTTAC........................................................

1.00

0.00

1.00

............................................................................................................................................................................TTTTTTTTTTTTCTTTTTGTACG.......................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTTGCT........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTGTAG...........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTAA...........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTGGG.........................................................

1.00

7.00

1.00

.........................................................................................................................................................................GACTTTTTTTTTTTTCTTTTGCC..........................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTAAC..........................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTCCGG..........................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTGGTG..........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTCGC.............................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTGGAG............................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTCTT.............................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTCCC...........................................................

1.00

0.00

1.00

.............................................................................................................................................................................TTTTTTTTTTTCTTTTTGTATTTG.....................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTATAA........................................................

1.00

0.00

1.00

..................................................................................................................................................................................TTTTTTCTTTTTGTACGGG.....................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTCGG..........................................................

1.00

0.00

1.00

...........................................................................................................................................................................CTTTTTTTTTTTTCTTTTTGTATTTG.....................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTTGGT........................................................

1.00

0.00

1.00

.......................................................................................................................................................................AAGACTTTTTTTTTTTTCTTTTTGG..........................................................

1.00

0.00

1.00

.......................................................................................................................................................................AAGACTTTTTTTTTTTTCTTTTTGAG.........................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTCG...........................................................

1.00

0.00

1.00

.............................................................................................................................................................................TTTTTTTTTTTCTTTTTGTCGT.......................................................

1.00

0.00

1.00

.............................................................................................................................................................................TTTTTTTTTTTCTTTTTGTCGGC......................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTCGC............................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTGGCC..........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTCC...........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTCGT..........................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTAACG..........................................................

1.00

0.00

1.00

.......................................................................................................................................................................AAGACTTTTTTTTTTTTCTTTG.............................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTACC..........................................................

1.00

0.00

1.00

.............................................................................................................................................................................TTTTTTTTTTTCTTTTTGTATGGG.....................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTTTGT........................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTTTTC........................................................

1.00

0.00

1.00

..............................................................................................................................................................................TTTTTTTTTTCTTTTTGTATTTGTT...................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTCT.............................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTCTAA............................................................

1.00

0.00

1.00

.......................................................................................................................................................................AAGACTTTTTTTTTTTTCTTTTGCG..........................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTAATT.........................................................

1.00

0.00

1.00

................................................................................................................................................................................TTTTTTTTCTTTTTGTATACTG....................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTAGGT..........................................................

1.00

0.00

1.00

.......................................................................................................................................................................AAGACTTTTTTTTTTTTCTTTTTTGGG........................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTAGG.........................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTACG.........................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTTTCG........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTGTATGGG.....................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTGGC..........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTAATT...........................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTGGT...........................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTGACCA.......................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTGCGG.........................................................

1.00

0.00

1.00

.............................................................................................................................................................................TTTTTTTTTTTCTTTTTGTATG.......................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTCCGG.........................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTAAAG.........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTTTGG........................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTGTTTTA......................................................

1.00

0.00

1.00

..................................................................................................................................................................................TTTTTTCTTTTTGTACCCG.....................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTCTTT..........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTCTG...........................................................

1.00

0.00

1.00

................................................................................................................................................................................................................TAACTTTCAAGTGGAAAC........................

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTTA..........................................................

1.00

0.00

1.00

............................................................................................................................................................................TTTTTTTTTTTTCTTTTTGTATTTGT....................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTCGTC........................................................

1.00

0.00

1.00

.............................................................................................................................................................................TTTTTTTTTTTCTTTTTGTATTGTG....................................................

1.00

0.00

1.00

..............................................................................................................................................................................TTTTTTTTTTCTTTTTGTATGGG.....................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTCAGG.........................................................

1.00

0.00

1.00

..........................................................................................................................................................................ACTTTTTTTTTTTTCTTTTTGAGG........................................................

1.00

0.00

1.00

................................................................................................................................................................................TTTTTTTTCTTTTTGTATTCCC....................................................

1.00

0.00

1.00

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTGCC.........................................................

0.50

7.00

0.50

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTGAGGC.......................................................

0.50

7.00

0.50

................................................................................................................................................................................................................TAACTTTCAAGTGGAAACCA......................

0.50

1.00

0.50

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTGAGA........................................................

0.50

7.00

0.50

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTGG..........................................................

0.50

7.00

0.50

........................................................................................................................................................................AGACTTTTTTTTTTTTCTTTTTGGGAC.......................................................

0.50

7.00

0.50