ID: uc001rfp.1_intron_1_0_chr12_22507260_r
GENE: (2)
chr12:22507210-22507680-


(1)
AGO2.ip 		(1)
B-CELL 		(11)
BRAIN 		(13)
BREAST 		(8)
CELL-LINE 		(1)
CERVIX 		(1)
HELA 		(1)
LIVER 		(1)
OTHER 		(2)
SKIN 		(1)
TESTES

Sense strand
ACCTGCCTTATGATTGGGCAGAAACTCCCACCCATGGAAGCTGAAACTAGGTAATAAGTGGAAACAAGTGGAAAGTGTGGGAGATGGGAATGGGGTATTTAACTGGTAACAATGCTAGGAAAGGGAACCATCATTCTTTTCTTGAGACAATATCTCACAGCAGGAAAATAATATTTTTAGCTGTCTCAGATGTGGTGTGGAATCATGGCCAATGCTAGGCAAAGCCCCTAGATTTGTTTTTCCCTGAGGAAAAAGATTGTATTGAATCCATACTATGAGATTCACTCAAAGAATGCACTTGGGAAGTTTAGAGAAAATAGGTTAATTAGCATCCCTTGATGACTCTTGAATATGAGCAGGTCGCATTTGCCATTTAGGTTGTGTTTCGTTGGTTGTATTTATTGTATTTATTCTTTTGTAGTTTTTAGAGAAAATTTTCTTTGAACTGGAGGATACATTGTGATTTTGGCA
................................................................................................................................((((..((((.....))))..((((((.(((((..((((......))))..)))))...)))))))))).(((.(((....((((.(((((.......))))).....(((((((....))))))).))))...))).)))..........................................................................................................................................................................................................
...............................................................................................................................128...........................................................................................................................................270.......................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577579(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189784SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		TAX577589(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR343335GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577740(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM532880(GSM532880)
G659T. (cervix)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191545(GSM715655)
139genomic small RNA (size selected RNA from . (breast)		SRR189785TAX577590(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR343337SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		TAX577580(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577741(Rovira)
total RNA. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
....................................................................................................................................................................................................................................................TGAGGAAAAAGATTGTATAGTT.............................................................................................................................................................................................................22222.000.50-2.002.502.502.002.50--0.50----2.001.00-1.001.001.001.00-0.50-----0.50---------0.50----0.500.500.50
....................................................................................................................................................................................................................................................TGAGGAAAAAGATTGTATATTT.............................................................................................................................................................................................................2225.000.50-0.500.501.000.50---0.500.50-----0.50---0.50---------------------0.50---
....................................................................................................................................................................................................................................................TGAGGAAAAAGATTGTATAGT..............................................................................................................................................................................................................2123.000.50----0.500.50--0.50------0.50-0.50---0.50-----------------------
....................................................................................................................................................................................................................................................TGAGGAAAAAGATTGTATAG...............................................................................................................................................................................................................2022.500.502.00-------0.50------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATTTTCTTTGAACTGGAGGATA................2612.002.00-----------2.00---------------------------------
....................................................................................................................................................................................................................................................TGAGGAAAAAGATTGTACAG...............................................................................................................................................................................................................202.000.002.00--------------------------------------------
....................................................................................................................................................................................................................................................TGAGGAAAAAGATTGTTTAG...............................................................................................................................................................................................................202.000.002.00--------------------------------------------
....................................................................................................................................................................................................................................................TGAGGAAAAAGATTGTATCTTT.............................................................................................................................................................................................................2221.500.50-0.50---0.50---------------------------------0.50-----
....................................................................................................................................................................................................................................................TGAGGAAAAAGATTGTATAGCT.............................................................................................................................................................................................................2221.500.50--0.50------------------------0.50----------0.50------
................................CATGGAAGCTGAAACTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-----------------------------1.00---------------
.....................................................................................................................................................................................................................................................GAGGAAAAAGATTGTATAGT..............................................................................................................................................................................................................201.000.00-------------------------------1.00-------------
.................................................................................................................GCTAGGAAAGGGAAC.......................................................................................................................................................................................................................................................................................................................................................1501.001.00----------------------------1.00----------------
....................................................................................................................................................................................................................................................TGAGGAAAAAGATTGTATTGTTA............................................................................................................................................................................................................2311.001.00----1.00----------------------------------------
....................................................................................................................................ATTCTTTTCTTGAGATGGA................................................................................................................................................................................................................................................................................................................................191.000.00----------1.00----------------------------------
....................................................................................................................................................................................................................................................TGAGGAAAAAGATTGTACAA...............................................................................................................................................................................................................201.000.001.00--------------------------------------------
......................................................................................................................................................................................................................................................AGGAAAAAGATTGTAAATT..............................................................................................................................................................................................................191.000.00---1.00-----------------------------------------
.............................................................................................GGTATTTAACTGGTAGCG........................................................................................................................................................................................................................................................................................................................................................................181.000.00--------------------------1.00------------------
....................................................................................................................................................................................................................................................TGAGGAAAAAGATTGTATATT..............................................................................................................................................................................................................2121.000.50--0.50-----0.50------------------------------------
................................................................................................................................CATCATTCTTTTCTTATA.....................................................................................................................................................................................................................................................................................................................................181.000.00-------------------------1.00-------------------
...........................................................................TGTGGGAGATGGGAATGGGGTATTTAACCG..............................................................................................................................................................................................................................................................................................................................................................................301.000.00------1.00--------------------------------------
..............................................................AACAAGTGGAAAGTGACTT......................................................................................................................................................................................................................................................................................................................................................................................................191.000.00------------------------1.00--------------------
...................................................................................................................................................................................................................................................................................................................................................................................ATTTAGGTTGTGTTTACA..................................................................................181.000.00--------------------1.00------------------------
....................................................................................................................................................................................................................................................TGAGGAAAAAGATTGTATAAAT.............................................................................................................................................................................................................2221.000.50-----0.50---------0.50-----------------------------
....................................................................................................................................................................................................................................................TGAGGAAAAAGATTGTATAT...............................................................................................................................................................................................................2021.000.501.00--------------------------------------------
....................................................................................................................................................................................................................................................TGAGGAAAAAGATTGTCTAA...............................................................................................................................................................................................................201.000.00-1.00-------------------------------------------
........TATGATTGGGCAGAACGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00----------------------1.00----------------------
...........GATTGGGCAGAAACTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00-----------------------1.00---------------------
.....................................................................................................................................................................................................................................................GAGGAAAAAGATTGTATATTT.............................................................................................................................................................................................................211.000.00---------1.00-----------------------------------
....................................................................................................................................................................................................................................................TGAGGAAAAAGATTGTATTG...............................................................................................................................................................................................................2011.001.001.00--------------------------------------------
....................................................................................................................................................................................................................................................TGAGGAAAAAGATTGTATTTTT.............................................................................................................................................................................................................221.000.00--------------------------------1.00------------
.....................................................................................................................................................................................................................................................GAGGAAAAAGATTGTCTA................................................................................................................................................................................................................181.000.00------------------------------1.00--------------
....................................................................................................................................................................................................................................................TGAGGAAAAAGATTGTAGCA...............................................................................................................................................................................................................201.000.00--------------1.00------------------------------
..........TGATTGGGCAGAAACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1630.670.67-----------------------------------0.67---------
....................................................................................................................................................................................................................................................TGAGGAAAAAGATTGTATGA...............................................................................................................................................................................................................2020.500.500.50--------------------------------------------
....................................................................................................................................................................................................................................................TGAGGAAAAAGATTGTAT.................................................................................................................................................................................................................1820.500.50----------------0.50----------------------------
....................................................................................................................................................................................................................................................TGAGGAAAAAGATTGTATAGTA.............................................................................................................................................................................................................2220.500.50---------0.50-----------------------------------
....................................................................................................................................................................................................................................................TGAGGAAAAAGATTGTATAGGT.............................................................................................................................................................................................................2220.500.50-0.50-------------------------------------------
....................................................................................................................................................................................................................................................TGAGGAAAAAGATTGTATATAC.............................................................................................................................................................................................................2220.500.50-0.50-------------------------------------------
...................................................................GTGGAAAGTGTGGGAGAT..................................................................................................................................................................................................................................................................................................................................................................................................1820.500.50----------------------------------------0.50----
....................................................................................................................................................................................................................................................TGAGGAAAAAGATTGTATAATT.............................................................................................................................................................................................................2220.500.50----0.50----------------------------------------
....................................................................................................................................................................................................................................................TGAGGAAAAAGATTGTATGGAT.............................................................................................................................................................................................................2220.500.50------------------------------------0.50--------
....................................................................................................................................................................................................................................................TGAGGAAAAAGATTGTATAGGA.............................................................................................................................................................................................................2220.500.50-0.50-------------------------------------------
....................................................................................................................................................................................................................................................TGAGGAAAAAGATTGTATAA...............................................................................................................................................................................................................2020.500.500.50--------------------------------------------
....................................................................................................................................................................................................................................................TGAGGAAAAAGATTGTATATGT.............................................................................................................................................................................................................2220.500.50--0.50------------------------------------------
....................................................................................................................................................................................................................................................TGAGGAAAAAGATTGTATAGA..............................................................................................................................................................................................................2120.500.50------------------0.50--------------------------
.........................................................................................ATGGGGTATTTAACTG..............................................................................................................................................................................................................................................................................................................................................................................1630.330.33--------------------0.33------------------------

Antisense strand
ACCTGCCTTATGATTGGGCAGAAACTCCCACCCATGGAAGCTGAAACTAGGTAATAAGTGGAAACAAGTGGAAAGTGTGGGAGATGGGAATGGGGTATTTAACTGGTAACAATGCTAGGAAAGGGAACCATCATTCTTTTCTTGAGACAATATCTCACAGCAGGAAAATAATATTTTTAGCTGTCTCAGATGTGGTGTGGAATCATGGCCAATGCTAGGCAAAGCCCCTAGATTTGTTTTTCCCTGAGGAAAAAGATTGTATTGAATCCATACTATGAGATTCACTCAAAGAATGCACTTGGGAAGTTTAGAGAAAATAGGTTAATTAGCATCCCTTGATGACTCTTGAATATGAGCAGGTCGCATTTGCCATTTAGGTTGTGTTTCGTTGGTTGTATTTATTGTATTTATTCTTTTGTAGTTTTTAGAGAAAATTTTCTTTGAACTGGAGGATACATTGTGATTTTGGCA
................................................................................................................................((((..((((.....))))..((((((.(((((..((((......))))..)))))...)))))))))).(((.(((....((((.(((((.......))))).....(((((((....))))))).))))...))).)))..........................................................................................................................................................................................................
...............................................................................................................................128...........................................................................................................................................270.......................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577579(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189784SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		TAX577589(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR343335GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577740(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM532880(GSM532880)
G659T. (cervix)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191545(GSM715655)
139genomic small RNA (size selected RNA from . (breast)		SRR189785TAX577590(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR343337SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		TAX577580(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577741(Rovira)
total RNA. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
.........................................................................................................................................................................................................................................................................................................................................................................................GTTGTGTTTCGTTGGTAG............................................................................ 182.000.00------------2.00--------------------------------
............................................................................................................................................................ACAGCAGGAAAATAATTGAG....................................................................................................................................................................................................................................................................................................... 201.000.00----------1.00----------------------------------
...................................................................................................................................................................................................................................................................................................................TTAGAGAAAATAGGTTAG.................................................................................................................................................. 181.000.00------1.00--------------------------------------
.....................................................................................................................................................................................................................................................GAGGAAAAAGATTGTTTG................................................................................................................................................................................................................ 181.000.00-------1.00-------------------------------------
...................AGAAACTCCCACCCACAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................. 191.000.00---------------------------------1.00-----------
...........................................................................................................................................................................................................................................................................................................................................................................................TGTGTTTCGTTGGTTGGA.......................................................................... 181.000.00----------------------------------1.00----------
.........................................................................................................................................................................................................................................................AAAAAGATTGTATTGTTTG........................................................................................................................................................................................................... 191.000.00-------1.00-------------------------------------
................................................................................................................................................................................................................................................................................................................................GTTAATTAGCATCCCTAG..................................................................................................................................... 181.000.00------1.00--------------------------------------
.........................................................................................................................................................................................................................................................AAAAAGATTGTATTGTTTC........................................................................................................................................................................................................... 191.000.00-------1.00-------------------------------------