uc001rel.2_intron_1_0_chr12_20966573

TAATCTCTTTAGGCTAGGAGTTTGTCTCTGTCTTTCCTCCTCTGTGTCCAGCATTGACCTAGTCCTGTGGTCAGGAAATAGCAGGCCCTGAATGAATATTAGAGAATGATTGATTGATTGATATTGAGCTTGTGGCTTTTCCTATTTTTAAATTGTATATTGTTAAAGTAAAATAAATTATACTTTTTCTTTTTTAACAGGTGATCATTTCAAACCAAGCATCAGCAACAATTAAAAATATTCACTTGGT ..................................................(((..((((.........)))).(((((..((((((........((((((((..(((.....)))..))))))))..))))))....)))))...........)))....((((((((.((((...........))))...))))))))................................................... ..................................................51...................................................................................................................................................200................................................	Size	Perfect hit	Total Norm	Perfect Norm	SRR207114(GSM721076) "IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)	SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line)	SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189782	SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver)	SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver)	SRR037937(GSM510475) 293cand2. (cell line)	TAX577590(Rovira) total RNA. (breast)	GSM450610(GSM450610) miRNA sequencing raw reads from post-mortem s. (brain)	SRR330917(SRX091755) tissue: normal skindisease state: normal. (skin)
......................................................TGACCTAGTCCTGTGCGT..................................................................................................................................................................................	18		30.00	0.00	27.00	3.00	-	-	-	-	-	-	-	-	-	-
......................................................TGACCTAGTCCTGTGCG...................................................................................................................................................................................	17		24.00	0.00	20.00	4.00	-	-	-	-	-	-	-	-	-	-
......................................................TGACCTAGTCCTGTGCGTG.................................................................................................................................................................................	19		23.00	0.00	22.00	1.00	-	-	-	-	-	-	-	-	-	-
......................................................TGACCTAGTCCTGTGCGG..................................................................................................................................................................................	18		8.00	0.00	8.00	-	-	-	-	-	-	-	-	-	-	-
......................................................TGACCTAGTCCTGTGCGGG.................................................................................................................................................................................	19		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-
......................................................TGACCTAGTCCTGTGCTT..................................................................................................................................................................................	18		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-
......................................................TGACCTAGTCCTGTGGC...................................................................................................................................................................................	17		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................................................................................ATACTTTTTCTTTTTTCTCG...................................................	20		2.00	0.00	-	-	2.00	-	-	-	-	-	-	-	-	-
.................................................................................................................................................................................TTATACTTTTTCTTTTTACTT....................................................	21		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-
...................................................................................................................................................................................ATACTTTTTCTTTTTTCTTG...................................................	20		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-
......................................................TGACCTAGTCCTGTGTCG..................................................................................................................................................................................	18		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
......................................................TGACCTAGTCCTGTGCA...................................................................................................................................................................................	17		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
......................................................................................................................................................................................CTTTTTCTTTTTTAACACTCG...............................................	21		1.00	0.00	-	-	-	-	-	-	1.00	-	-	-	-	-
......................................................TGACCTAGTCCTGTGCGGT.................................................................................................................................................................................	19		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.................................................................................................................................................................................TTATACTTTTTCTTTTTTTTCT...................................................	22		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-
......................................................TGACCTAGTCCTGTGCGCG.................................................................................................................................................................................	19		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
......................................................................TCAGGAAATAGCAGGTTT..................................................................................................................................................................	18		1.00	0.00	-	-	-	-	-	-	-	-	-	1.00	-	-
......................................................TGACCTAGTCCTGTGGGT..................................................................................................................................................................................	18		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.........................................................................................GAATGAATATTAGAGGCGG..............................................................................................................................................	19		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-
......................................................TGACCTAGTCCTGTGCGAG.................................................................................................................................................................................	19		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
......................................................TGACCTAGTCCTGTGCGC..................................................................................................................................................................................	18		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................................................................................ATACTTTTTCTTTTTTATAG...................................................	20		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-
.........................................................................................................................................................................................................................AGCATCAGCAACAATTAAAAATATTCA......	27	1	1.00	1.00	-	-	-	-	-	1.00	-	-	-	-	-	-
..............................................................................................................................................................................................................................CAGCAACAATTAAAAATTT.........	19		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-
......................................................................................................................................................................................CTTTTTCTTTTTTAACACCCG...............................................	21		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-
......................................................TGACCTAGTCCTGTGCT...................................................................................................................................................................................	17		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................................................................................ATACTTTTTCTTTTTTAACAG..................................................	21	1	1.00	1.00	-	-	-	-	-	-	1.00	-	-	-	-	-
.........................CTCTGTCTTTCCTCCTC................................................................................................................................................................................................................	17	9	0.11	0.11	-	-	-	-	-	-	-	-	-	-	-	0.11

TAATCTCTTTAGGCTAGGAGTTTGTCTCTGTCTTTCCTCCTCTGTGTCCAGCATTGACCTAGTCCTGTGGTCAGGAAATAGCAGGCCCTGAATGAATATTAGAGAATGATTGATTGATTGATATTGAGCTTGTGGCTTTTCCTATTTTTAAATTGTATATTGTTAAAGTAAAATAAATTATACTTTTTCTTTTTTAACAGGTGATCATTTCAAACCAAGCATCAGCAACAATTAAAAATATTCACTTGGT
..................................................(((..((((.........)))).(((((..((((((........((((((((..(((.....)))..))))))))..))))))....)))))...........)))....((((((((.((((...........))))...))))))))...................................................
..................................................51...................................................................................................................................................200................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)

SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)

SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189782

SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)

SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)

SRR037937(GSM510475)
293cand2. (cell line)

TAX577590(Rovira)
total RNA. (breast)

GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)

......................................................TGACCTAGTCCTGTGCGT..................................................................................................................................................................................

30.00

0.00

27.00

3.00

......................................................TGACCTAGTCCTGTGCG...................................................................................................................................................................................

24.00

0.00

20.00

4.00

......................................................TGACCTAGTCCTGTGCGTG.................................................................................................................................................................................

23.00

0.00

22.00

1.00

......................................................TGACCTAGTCCTGTGCGG..................................................................................................................................................................................

8.00

0.00

8.00

......................................................TGACCTAGTCCTGTGCGGG.................................................................................................................................................................................

2.00

0.00

2.00

......................................................TGACCTAGTCCTGTGCTT..................................................................................................................................................................................

2.00

0.00

2.00

......................................................TGACCTAGTCCTGTGGC...................................................................................................................................................................................

2.00

0.00

2.00

...................................................................................................................................................................................ATACTTTTTCTTTTTTCTCG...................................................

2.00

0.00

2.00

.................................................................................................................................................................................TTATACTTTTTCTTTTTACTT....................................................

1.00

0.00

1.00

...................................................................................................................................................................................ATACTTTTTCTTTTTTCTTG...................................................

1.00

0.00

1.00

......................................................TGACCTAGTCCTGTGTCG..................................................................................................................................................................................

1.00

0.00

1.00

......................................................TGACCTAGTCCTGTGCA...................................................................................................................................................................................

1.00

0.00

1.00

......................................................................................................................................................................................CTTTTTCTTTTTTAACACTCG...............................................

1.00

0.00

1.00

......................................................TGACCTAGTCCTGTGCGGT.................................................................................................................................................................................

1.00

0.00

1.00

.................................................................................................................................................................................TTATACTTTTTCTTTTTTTTCT...................................................

1.00

0.00

1.00

......................................................TGACCTAGTCCTGTGCGCG.................................................................................................................................................................................

1.00

0.00

1.00

......................................................................TCAGGAAATAGCAGGTTT..................................................................................................................................................................

1.00

0.00

1.00

......................................................TGACCTAGTCCTGTGGGT..................................................................................................................................................................................

1.00

0.00

1.00

.........................................................................................GAATGAATATTAGAGGCGG..............................................................................................................................................

1.00

0.00

1.00

......................................................TGACCTAGTCCTGTGCGAG.................................................................................................................................................................................

1.00

0.00

1.00

......................................................TGACCTAGTCCTGTGCGC..................................................................................................................................................................................

1.00

0.00

1.00

...................................................................................................................................................................................ATACTTTTTCTTTTTTATAG...................................................

1.00

0.00

1.00

.........................................................................................................................................................................................................................AGCATCAGCAACAATTAAAAATATTCA......

1.00

..............................................................................................................................................................................................................................CAGCAACAATTAAAAATTT.........

1.00

0.00

1.00

......................................................................................................................................................................................CTTTTTCTTTTTTAACACCCG...............................................

1.00

0.00

1.00

......................................................TGACCTAGTCCTGTGCT...................................................................................................................................................................................

1.00

0.00

1.00

...................................................................................................................................................................................ATACTTTTTCTTTTTTAACAG..................................................

1.00

.........................CTCTGTCTTTCCTCCTC................................................................................................................................................................................................................

0.11

TAATCTCTTTAGGCTAGGAGTTTGTCTCTGTCTTTCCTCCTCTGTGTCCAGCATTGACCTAGTCCTGTGGTCAGGAAATAGCAGGCCCTGAATGAATATTAGAGAATGATTGATTGATTGATATTGAGCTTGTGGCTTTTCCTATTTTTAAATTGTATATTGTTAAAGTAAAATAAATTATACTTTTTCTTTTTTAACAGGTGATCATTTCAAACCAAGCATCAGCAACAATTAAAAATATTCACTTGGT ..................................................(((..((((.........)))).(((((..((((((........((((((((..(((.....)))..))))))))..))))))....)))))...........)))....((((((((.((((...........))))...))))))))................................................... ..................................................51...................................................................................................................................................200................................................	Size	Total Norm	SRR207114(GSM721076) "IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)	SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line)	SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189782	SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver)	SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver)	SRR037937(GSM510475) 293cand2. (cell line)	TAX577590(Rovira) total RNA. (breast)	GSM450610(GSM450610) miRNA sequencing raw reads from post-mortem s. (brain)	SRR330917(SRX091755) tissue: normal skindisease state: normal. (skin)
...................................CCTCCTCTGTGTCCATATA....................................................................................................................................................................................................	19	1.00	-	-	-	-	-	-	-	1.00	-	-	-	-
.....................................................TTGACCTAGTCCTGTGCC...................................................................................................................................................................................	18	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-
........................................................................................TGAATGAATATTAGAAAAG...............................................................................................................................................	19	1.00	-	-	-	-	-	1.00	-	-	-	-	-	-
.........................................................................................................................TATTGAGCTTGTGGCTTA...............................................................................................................	18	1.00	-	-	-	-	-	-	-	-	1.00	-	-	-
.....................................TCCTCTGTGTCCAGCCCG...................................................................................................................................................................................................	18	1.00	-	-	-	-	-	-	-	-	-	-	1.00	-