ID: uc001rav.2_intron_1_0_chr12_12879308_f.5p
GENE: (2)
chr12:12879258-12879507+


(4)
B-CELL 		(1)
BREAST 		(10)
CELL-LINE 		(1)
FIBROBLAST 		(2)
HELA 		(3)
OTHER 		(1)
RRP40.ip 		(2)
SKIN 		(1)
XRN.ip

Sense strand
AACAAACTCAAGATACGAAATGAGACTTTTGAAGTGCCTTTGATTTCTGGGTACGGAAATTCTTTTGATAAAGCGTGTGTACGTTAAGATTTAGGATGACTTTTTTTTTCTTTTTTGTAATACAGGTCTAATGGAAATGACATTCTTTATGAATTAGAACCCAATTATGTTTTAAAGTTTATAATAAGTCAAATGATTCTCTCAGTCCCTATGTCCGTATTAGTGAAATTCTATCTCCATATTAGCGAAA
............................................................((((((.((...((.((((((((..((((...((((.....))))...))))...)))).)))).))...)).)))).))..............................................................................................................
..................................................51...........................................................................................144........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR343334SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
.........................................................................................................................ACAGGTCTAATGGAAATGA..............................................................................................................1919.009.00--3.00--6.00-----------------
..........................................................................GTGTGTACGTTAAGATTTAGGA..........................................................................................................................................................2213.003.003.00----------------------
....................................................................................................................GTAATACAGGTCTAATGGAAATGA..............................................................................................................2413.003.003.00----------------------
..................................................................................................ACTTTTTTTTTCTTTTTTGGGG..................................................................................................................................222.000.00---2.00-------------------
....................................................ACGGAAATTCTTTTGATAAAGC................................................................................................................................................................................2212.002.00--2.00--------------------
...................................................................................................................TGTAATACAGGTCTAATGGAAAT................................................................................................................2312.002.002.00----------------------
....................................................................................TAAGATTTAGGATGACTT....................................................................................................................................................1812.002.002.00----------------------
..............................GAAGTGCCTTTGATTTCTGGG.......................................................................................................................................................................................................2112.002.00--2.00--------------------
...................................................TACGGAAATTCTTTTGATAAAGCGTG.............................................................................................................................................................................2612.002.002.00----------------------
...............................................................................................ATGACTTTTTTTTTCTTTTTCTGG...................................................................................................................................242.000.00-2.00---------------------
.........................................................................................................................ACAGGTCTAATGGAAATG...............................................................................................................1812.002.00----2.00------------------
...............................................................................................ATGACTTTTTTTTTCTTTCAGG.....................................................................................................................................222.000.00-1.00-1.00-------------------
...................................................................................................CTTTTTTTTTCTTTTTTGGATC.................................................................................................................................221.000.00---1.00-------------------
....................................CCTTTGATTTCTGGGTACGG..................................................................................................................................................................................................2011.001.001.00----------------------
...............................................................................................ATGACTTTTTTTTTCTTTTTTCTGG..................................................................................................................................251.000.00-1.00---------------------
..............................................................................GTACGTTAAGATTTAGGATGACTTTT..................................................................................................................................................2611.001.00--------1.00--------------
...................................................................................................CTTTTTTTTTCTTTTTTGTATG.................................................................................................................................221.000.00-1.00---------------------
.......................................................................................................TTTTTTCTTTTTTGTAATTAC..............................................................................................................................211.000.00-1.00---------------------
...............................................................................TACGTTAAGATTTAGGATGAC......................................................................................................................................................2111.001.00----1.00------------------
..................................................................................................ACTTTTTTTTTCTTTTTTGTATGGG...............................................................................................................................251.000.00-1.00---------------------
.................................................................................CGTTAAGATTTAGGATGA.......................................................................................................................................................1811.001.00--1.00--------------------
..................................................................................................ACTTTTTTTTTCTTTTTTGTCTT.................................................................................................................................231.000.00---1.00-------------------
..........................................................................................................................CAGGTCTAATGGAAATGA..............................................................................................................1821.001.00--1.00--------------------
..................................................................................................ACTTTTTTTTTCTTTTTTGGCTG.................................................................................................................................231.000.00-1.00---------------------
...............................................................................................ATGACTTTTTTTTTCTTTTACAG....................................................................................................................................231.000.00-1.00---------------------
...............................................................................TACGTTAAGATTTAGGATGACTTTT..................................................................................................................................................2511.001.00----1.00------------------
..................................................................................................ACTTTTTTTTTCTTTTTTGGCT..................................................................................................................................221.000.00---1.00-------------------
...............................................................................................ATGACTTTTTTTTTCTTTGTTG.....................................................................................................................................221.000.00---1.00-------------------
.....................................................................................................TTTTTTTTCTTTTTTGTAAGCTG..............................................................................................................................231.000.00-1.00---------------------
..............................................................................GTACGTTAAGATTTAGGATGACTT....................................................................................................................................................2411.001.00------------------1.00----
.......................................................................................................................................................AATTAGAACCCAATTATGTTT..............................................................................2111.001.00-------------1.00---------
.....................................................................................AAGATTTAGGATGACTT....................................................................................................................................................1711.001.00----1.00------------------
...................................................................................................................TGTAATACAGGTCTAATGGAAATGA..............................................................................................................2511.001.00----1.00------------------
......................AGACTTTTGAAGTGCCTTTGAT..............................................................................................................................................................................................................2211.001.001.00----------------------
..................................................................................GTTAAGATTTAGGATGACTTTTTTT...............................................................................................................................................2511.001.00--------1.00--------------
.......................................................................................................................ATACAGGTCTAATGGAAATGA..............................................................................................................2111.001.00-----------------1.00-----
..................................................................................GTTAAGATTTAGGATGACTTT...................................................................................................................................................2111.001.00----1.00------------------
..................................................................................................ACTTTTTTTTTCTTTTTTGTGGGG................................................................................................................................241.000.00-1.00---------------------
...............................................................................................ATGACTTTTTTTTTCTTTTTTGG....................................................................................................................................231.000.00-1.00---------------------
................................................................................ACGTTAAGATTTAGGATGA.......................................................................................................................................................1911.001.00---------1.00-------------
................................................................................................TGACTTTTTTTTTCTTTTTGGC....................................................................................................................................221.000.00-1.00---------------------
................................................................................................TGACTTTTTTTTTCTTTTTCTCG...................................................................................................................................231.000.00---1.00-------------------
.............TACGAAATGAGACTTTTGAAGTGCCT...................................................................................................................................................................................................................2611.001.00---------1.00-------------
................................................................................................TGACTTTTTTTTTCTTTTGGAG....................................................................................................................................221.000.00-1.00---------------------
..................................................................................................ACTTTTTTTTTCTTTTTTGTATGG................................................................................................................................241.000.00---1.00-------------------
...............................................................................................ATGACTTTTTTTTTCTTCTTG......................................................................................................................................211.000.00---1.00-------------------
...............................................................................................ATGACTTTTTTTTTCTTTTCTGA....................................................................................................................................231.000.00-1.00---------------------
................................................................................................TGACTTTTTTTTTCTTTTTTGGAAG.................................................................................................................................2580.120.12-0.12---------------------
................................................................................................TGACTTTTTTTTTCTTTTTTG.....................................................................................................................................2180.120.12---0.12-------------------

Antisense strand
AACAAACTCAAGATACGAAATGAGACTTTTGAAGTGCCTTTGATTTCTGGGTACGGAAATTCTTTTGATAAAGCGTGTGTACGTTAAGATTTAGGATGACTTTTTTTTTCTTTTTTGTAATACAGGTCTAATGGAAATGACATTCTTTATGAATTAGAACCCAATTATGTTTTAAAGTTTATAATAAGTCAAATGATTCTCTCAGTCCCTATGTCCGTATTAGTGAAATTCTATCTCCATATTAGCGAAA
............................................................((((((.((...((.((((((((..((((...((((.....))))...))))...)))).)))).))...)).)))).))..............................................................................................................
..................................................51...........................................................................................144........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR343334SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
..........................................................................................................................................................................................................ATACGGACATAGGGACTG.............................. 1812.002.00--2.00--------------------
....................................................................................................................................................................................................AATACGGACATAGGGACTGAGAGAA............................. 2512.002.00-------2.00---------------
...................................................................................................................................................................................................GGACATAGGGACTGAGAGAAT.................................. 2112.002.00----------2.00------------
.............................................................................................................................................................................................................GAATTTCACTAATACGGACATAGGGA................... 2612.002.002.00----------------------
......................................................................................................................................................................................................................ATAGAATTTCACTAATACGG................ 2012.002.002.00----------------------
.................................................................................................................................................................................................................................AATATGGAGATAGAATTT....... 1821.501.50-----------0.50-------1.00---
..........................................................................................................................................................................................AGTCAAATGATTCTCTCGTA............................................ 201.000.00---------------1.00-------
.............................TGAAGTGCCTTTGATTTG........................................................................................................................................................................................................... 181.000.00------------1.00----------
.......................................................................................................................................................................................................................AGATAGAATTTCACTAATACG.............. 2111.001.001.00----------------------
.........................................AATTTCCGTACCCAGAAATC............................................................................................................................................................................................. 2011.001.00--------------------1.00--
..................................................................................................................................................................................................GACATAGGGACTGAGAGAATC................................... 2111.001.00----1.00------------------
...AAACTCAAGATACGAATTA.................................................................................................................................................................................................................................... 191.000.00----------------1.00------
.................................................................................................................................................................................................................................AAATTCTATCTCCATATTT...... 191.000.00------1.00----------------
...............................................................................................................................................................................................................................AATATGGAGATAGAATTTCA....... 2011.001.00-----------1.00-----------
.................................................................................................................................................................................................................................AAATTCTATCTCCATATTG...... 191.000.00--------------1.00--------
...................................................................................................................................................................................................................AGATAGAATTTCACTAATACGGACA.............. 2511.001.00---------------------1.00-
...................................................................................................................................................................................................................................ATTCTATCTCCATATATTT.... 191.000.00------1.00----------------
...................................CCCAGAAATCAAAGGC....................................................................................................................................................................................................... 1680.120.12----------------------0.12