| (1) AGO2.ip | (5) BREAST | (14) CELL-LINE | (2) LIVER | (2) OTHER | (1) XRN.ip |
| TTTTAGCCATGATGAGGTCTTAGGGAATGAGGAAGCCATAGTCCCAAAGTACTGTTTGAGGTCAATTCTTTGGAAAAGAAGAATTGTGCTAATAGTGTATTGTAAAGAAACACTAATAGAGATGAAGGAAGAAAAGTTGAAAGAAAGTCTGATAGTTTCTATGTTGTTATTTTAATATTTTAATTATTTTTTTCTTTTAGATTTTGAACCCTCCACCATCCCCAGCCACAGAGCGATCACATTACACTAT ..............................................................................................................................(((((((.((((((((.(((((..(((((........))))))))))....)))))))).)))))))......................................................... .......................................................................................................................120......................................................................193....................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR039190(GSM494809) PBMCs were isolated by ficoll gradient from t. (blood) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR029128(GSM416757) H520. (cell line) | SRR060169(GSM565979) 5-8F_cytoplasm. (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR191607(GSM715717) 192genomic small RNA (size selected RNA from . (breast) | SRR189782 | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR015448(SRR015448) cytoplasmic small RNAs. (breast) | RoviraIPAgo2(Rovira) total RNA. (ago2 breast) | SRR189784 | SRR015446(SRR015446) smallRNAs high-throughput sequencing Total. (breast) | SRR191421(GSM715531) 122genomic small RNA (size selected RNA from . (breast) | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | SRR037937(GSM510475) 293cand2. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR390723(GSM850202) total small RNA. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR029130(GSM416759) DLD2. (cell line) | SRR060168(GSM565978) 5-8F_nucleus. (cell line) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ............................................................................................................................AAGGAAGAAAAGTTGACTT........................................................................................................... | 19 | 34.00 | 0.00 | 27.00 | - | - | 1.00 | - | 2.00 | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | 1.00 | 1.00 | - | - | - | |
| ........................................................................................................................................................................ATTTTAATATTTTAATTTCTG............................................................. | 21 | 18.00 | 0.00 | - | 14.00 | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| ............................................................................................................................AAGGAAGAAAAGTTGACTTT.......................................................................................................... | 20 | 18.00 | 0.00 | 8.00 | - | 9.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................AAGGAAGAAAAGTTGACT............................................................................................................ | 18 | 11.00 | 0.00 | - | - | 4.00 | 3.00 | - | 2.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ............................................................................................................................................................................TAATATTTTAATTATTTATTG......................................................... | 21 | 2.00 | 0.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................AGGAAGAAAAGTTGACTT........................................................................................................... | 18 | 2.00 | 0.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTAATATTTTAATTATTCTTG.......................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................................................AACCCTCCACCATCCCCAGCCACAGAGCGACCA........... | 33 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................TCCCCAGCCACAGAGCGATCACATTACA.... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ..............................................................................................................................GGAAGAAAAGTTGAAGGT.......................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................TGAACCCTCCACCATCCCCAGCCACAGAGC................ | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ......................................................................................................................................................................TTATTTTAATATTTTAATTATTTTTTTCTTTTAG.................................................. | 34 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................ACCCTCCACCATCCCCAGCCACAGAGCGACC............ | 31 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................................................GAACCCTCCACCATCCCCAGCTAC..................... | 24 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | |
| ......................................................................................................................................................................TTATTTTAATATTTTAATTATTTTTTTCTTTTAA.................................................. | 34 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................................................CTCCACCATCCCCAGCCACAGAGC................ | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................ATTTTAATATTTTAATTTCTA............................................................. | 21 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TTTTAGCCATGATGAGGTCTTAGGGAATGAGGAAGCCATAGTCCCAAAGTACTGTTTGAGGTCAATTCTTTGGAAAAGAAGAATTGTGCTAATAGTGTATTGTAAAGAAACACTAATAGAGATGAAGGAAGAAAAGTTGAAAGAAAGTCTGATAGTTTCTATGTTGTTATTTTAATATTTTAATTATTTTTTTCTTTTAGATTTTGAACCCTCCACCATCCCCAGCCACAGAGCGATCACATTACACTAT ..............................................................................................................................(((((((.((((((((.(((((..(((((........))))))))))....)))))))).)))))))......................................................... .......................................................................................................................120......................................................................193....................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR039190(GSM494809) PBMCs were isolated by ficoll gradient from t. (blood) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR029128(GSM416757) H520. (cell line) | SRR060169(GSM565979) 5-8F_cytoplasm. (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR191607(GSM715717) 192genomic small RNA (size selected RNA from . (breast) | SRR189782 | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR015448(SRR015448) cytoplasmic small RNAs. (breast) | RoviraIPAgo2(Rovira) total RNA. (ago2 breast) | SRR189784 | SRR015446(SRR015446) smallRNAs high-throughput sequencing Total. (breast) | SRR191421(GSM715531) 122genomic small RNA (size selected RNA from . (breast) | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | SRR037937(GSM510475) 293cand2. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR390723(GSM850202) total small RNA. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR029130(GSM416759) DLD2. (cell line) | SRR060168(GSM565978) 5-8F_nucleus. (cell line) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................GGAAAAGAAGAATTGTGTT................................................................................................................................................................ | 19 | 4.00 | 0.00 | - | - | - | - | - | - | - | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................AGTGTATTGTAAAGAAAG........................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................TAGTCCCAAAGTACTGAT.................................................................................................................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................AGGTCAATTCTTTGGTTTG............................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................................................GAACCCTCCACCATCCCAGC......................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................AGGTCAATTCTTTGGTATA............................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................AGGTCAATTCTTTGGTTGG............................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................ATTCTTCTTTTCCAAAG...................................................................................................................................................................... | 17 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |