ID: uc001qxk.1_intron_2_0_chr12_10277773_r
GENE: CLEC7A(5)
chr12:10277723-10277945-


(1)
AGO2.ip
(1)
B-CELL
(1)
BREAST
(7)
CELL-LINE
(1)
CERVIX
(1)
HEART
(2)
LIVER
(1)
OTHER
(3)
SKIN

Sense strand
GCTGGCAACTGGGCTCTAATCTCCTAAAGATAGACAGCTCAAATGAATTGGTAAGTGTAGACTTCTGTTATGATTATCTGTGGTGTGTATCCTGAAGGAAGATAGAGGGAGATTCCAGGTAATGACAATTTTTCCTAAAATGAAGTCTTTTTTTTTTTTTTTTTTTGAGGCAGAGTCTCACTCTGTTGCCCAAGCTAGAGTGCAGTGAAGCCGCGACATCCCA
.........................................................................................((..(((((((((.(((((((((((.((((.(((....)))...)).....)).))))))))))).)))))))))..)).......................................................
.....................................................................................86................................................................................168.....................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040031(GSM532916)
G013T. (cervix)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR038863(GSM458546)
MM603. (cell line)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
...............................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTCGAG.....................................................2716.000.0011.005.00------------------
...............................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTGGGC.....................................................277.000.007.00-------------------
...............................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTGGCC.....................................................275.000.005.00-------------------
...............................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTGACC.....................................................274.000.004.00-------------------
..............................................................................................................................................AAGTCTTTTTTTTTTTTTTTTTTTCGG......................................................274.000.003.001.00------------------
...............................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTCGG......................................................264.000.004.00-------------------
...............................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTCTGG.....................................................273.000.003.00-------------------
..............................................................................................................................................AAGTCTTTTTTTTTTTTTTTTTTTAGG......................................................273.000.001.002.00------------------
...............................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTGGGCC....................................................283.000.003.00-------------------
...............................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTGGGTC....................................................283.000.003.00-------------------
..............................................................................................................................................AAGTCTTTTTTTTTTTTTTTTTTTGGGC.....................................................282.000.002.00-------------------
............................................................................................................................................TGAAGTCTTTTTTTTTTTTTTTTTGGAG.......................................................282.000.00-2.00------------------
..............................................................................................................................................AAGTCTTTTTTTTTTTTTTTTTTTCTGG.....................................................282.000.002.00-------------------
...............................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTCGGT.....................................................272.000.002.00-------------------
..............................................................................................................................................AAGTCTTTTTTTTTTTTTTTTTTTGGAG.....................................................282.000.001.00------------1.00------
...............................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTCCTT.....................................................272.000.002.00-------------------
.............................................................................................................................................................................AGTCTCACTCTGTTGCCCAAGCCGGC........................262.000.002.00-------------------
..............................................................................................................................................AAGTCTTTTTTTTTTTTTCGAG...........................................................222.000.002.00-------------------
..............................................................................................................................................AAGTCTTTTTTTTTTTTTTTTTTTGGGTC....................................................292.000.00-2.00------------------
..........................................................................................CCTGAAGGAAGATAGAGGG..................................................................................................................1912.002.00---2.00----------------
............................................................................................................................................TGAAGTCTTTTTTTTTTTTTTTTTCT.........................................................261.000.00-1.00------------------
...............................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTCTAC.....................................................271.000.001.00-------------------
..................................................................................................AAGATAGAGGGAGATCT............................................................................................................171.000.00------------------1.00-
..............................................................................................................................................AAGTCTTTTTTTTTTTTTTTTTTTGTGG.....................................................281.000.001.00-------------------
...........................................................................................................................................ATGAAGTCTTTTTTTTTTTTTTCTT...........................................................251.000.001.00-------------------
...............................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTGGGTT....................................................281.000.001.00-------------------
...............................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTCCG......................................................261.000.001.00-------------------
..............................................................................................................................................AAGTCTTTTTTTTTTTTTTTTTTTGTCT.....................................................281.000.001.00-------------------
...............................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTCGGC.....................................................271.000.001.00-------------------
..............................................................................................................................................AAGTCTTTTTTTTTTTTTTTTTTTCATT.....................................................281.000.001.00-------------------
..............................................................................................................................................AAGTCTTTTTTTTTTTTTCGGC...........................................................221.000.001.00-------------------
...............................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTCAGC.....................................................271.000.001.00-------------------
..............................................................................................................................................AAGTCTTTTTTTTTTTTTTTTTTTAAGC.....................................................281.000.001.00-------------------
............................................................................................................................................................TTTTTTTTTTGAGGCAGAGGTTC............................................231.000.00-1.00------------------
.....................................................................................................................................................TTTTTTTTTTTTTTTTTGAGGCAGAGGCCC............................................301.000.00-1.00------------------
..............................................................................................................................................AAGTCTTTTTTTTTTTTTTTTTTTCACT.....................................................281.000.001.00-------------------
...............................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTGAAGG....................................................281.000.001.00-------------------
...............................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTGGCCA....................................................281.000.00-1.00------------------
...............................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTGGGTG....................................................281.000.001.00-------------------
...............................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTGGGG.....................................................271.000.001.00-------------------
..............................................................................................................................................AAGTCTTTTTTTTTTTTTTTTTTTAAGG.....................................................281.000.001.00-------------------
...............................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTGGGT.....................................................271.000.001.00-------------------
...............................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTGGCCT....................................................281.000.001.00-------------------
.............................................................................................................................................................................AGTCTCACTCTGTTGCCCAAG.............................2101.001.00------------1.00-------
...........................................................................................................................................................TTTTTTTTTTTGAGGCAGAGTCTCTCTT........................................281.000.00----1.00---------------
...............................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTGTGG.....................................................271.000.00----1.00---------------
..............................................................................................................................................AAGTCTTTTTTTTTTTTTTTTTTTAGC......................................................271.000.001.00-------------------
..........................AAGATAGACAGCTCAAATGAAT...............................................................................................................................................................................2211.001.00-------------------1.00
................................................................................................................................................GTCTTTTTTTTTTTTTTTTTTTCGC......................................................251.000.001.00-------------------
..................................................................................................................................................CTTTTTTTTTTTTTTTTTTTGAGGAGG..................................................271.000.00--1.00-----------------
............................................................................................................................................TGAAGTCTTTTTTTTTTTTTTTTTTTAG.......................................................281.000.001.00-------------------
..............................................................................................................................................AAGTCTTTTTTTTTTTTTTTTTTTGGTCT....................................................291.000.001.00-------------------
...........................................................................................................................................................................AGAGTCTCACTCTGTTGCCCAAAA............................241.000.00----------------1.00---
.....................................................................................................................................................TTTTTTTTTTTTTTTTTGAGGCAGAGGCA.............................................291.000.00-1.00------------------
.........................................................................................................................................................TTTTTTTTTTTTTGAGGCAGAGGG..............................................241.000.00-1.00------------------
......................................................GTGTAGACTTCTGTTATGA......................................................................................................................................................1911.001.00----------1.00---------
..............................................................................................................................................AAGTCTTTTTTTTTTTTTTTTTTCTGG......................................................271.000.001.00-------------------
....................................................................................................................................................TTTTTTTTTTTTTTTTTTGAGGCAGTAG...............................................281.000.00-1.00------------------
................................................................................................................................................GTCTTTTTTTTTTTTTTTTTTTGTATG....................................................271.000.001.00-------------------
.....................................................................................................................................................TTTTTTTTTTTTTTTTTGAGGCAGAGGCAG............................................301.000.001.00-------------------
..............................................................................................................................................AAGTCTTTTTTTTTTTTTTTTTTTGGGCC....................................................291.000.001.00-------------------
..............................................................................................................................................AAGTCTTTTTTTTTTTTTTTTTTTGGCC.....................................................281.000.001.00-------------------
........................................................................................................................................................TTTTTTTTTTTTTTGAGGCAGAGGCC.............................................261.000.00-1.00------------------
....................................................................................................................................................TTTTTTTTTTTTTTTTTTGAGGCAGCCCC..............................................291.000.001.00-------------------
..............................................................................................................................................AAGTCTTTTTTTTTTTTTTTTTTTCCCC.....................................................281.000.001.00-------------------
............................................................................................................................................TGAAGTCTTTTTTTTTTTGGAG.............................................................221.000.00-1.00------------------
............................................................................................................................................TGAAGTCTTTTTTTTTTTTTTTTTCTGG.......................................................281.000.00-1.00------------------
...........................................................................ATCTGTGGTGTGTATCCT..................................................................................................................................1811.001.00-----1.00--------------
..............................................................................................................................................AAGTCTTTTTTTTTTTTTTTTTTTGTAG.....................................................281.000.001.00-------------------
..............................................................................................................................................AAGTCTTTTTTTTTTTTTTTTTTTCGAG.....................................................281.000.001.00-------------------
...........................AGATAGACAGCTCAAATGAAT...............................................................................................................................................................................2111.001.00-----------------1.00--
..............................................................................................................................................AAGTCTTTTTTTTTTTTTTTTTTTATTC.....................................................281.000.001.00-------------------
......................................................................................................................................................TTTTTTTTTTTTTTTTGAGGCAGAGGTT.............................................281.000.00-1.00------------------
...............................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTGGGGA....................................................281.000.001.00-------------------
............................................................................................................................................TGAAGTCTTTTTTTTTTTTTTTTTTCGGG......................................................291.000.001.00-------------------
..............................................................................................................................................AAGTCTTTTTTTTTTTTTTTTTTCCGT......................................................271.000.001.00-------------------
.........................AAAGATAGACAGCTCAAATG..................................................................................................................................................................................2011.001.00--------------1.00-----
...............................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTGTTT.....................................................271.000.001.00-------------------
..............................................................................................................................................AAGTCTTTTTTTTTTTTTTTTTTTAGTC.....................................................281.000.00-1.00------------------
.....................................................................................................................................................TTTTTTTTTTTTTTTTTGAGGCATATA...............................................271.000.001.00-------------------
...............................................................................................................................................AGTCTTTTTTTTTTTTTTTTTTTGAGGC....................................................2850.200.200.20-------------------

Antisense strand
GCTGGCAACTGGGCTCTAATCTCCTAAAGATAGACAGCTCAAATGAATTGGTAAGTGTAGACTTCTGTTATGATTATCTGTGGTGTGTATCCTGAAGGAAGATAGAGGGAGATTCCAGGTAATGACAATTTTTCCTAAAATGAAGTCTTTTTTTTTTTTTTTTTTTGAGGCAGAGTCTCACTCTGTTGCCCAAGCTAGAGTGCAGTGAAGCCGCGACATCCCA
.........................................................................................((..(((((((((.(((((((((((.((((.(((....)))...)).....)).))))))))))).)))))))))..)).......................................................
.....................................................................................86................................................................................168.....................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040031(GSM532916)
G013T. (cervix)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR038863(GSM458546)
MM603. (cell line)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
..........................................................................................................................................................TTTTTTTTTTTTGAGGCAGAGTCTCACTGGTG..................................... 321.000.00------1.00-------------
........................................................................................................................................................................GGCAGAGTCTCACTCTGTCGG.................................. 211.000.00--------1.00-----------
.................................................................................................................................................................................................TCACTGCACTCTAGC............... 1501.001.00---------1.00----------
..........................................................................................................................................................................................TGCCCAAGCTAGAGTGCAGTT................ 211.000.00---------------1.00----
..............................................................................................AAGGAAGATAGAGGGATTT.............................................................................................................. 191.000.00--1.00-----------------
............................................................................................TGAAGGAAGATAGAGGAATG............................................................................................................... 201.000.00-----------1.00--------
......................................................................................................................................................................................CTGTTGCCCAAGCTAGAGTGCGTC................. 241.000.00-------1.00------------
........................................................................ATTATCTGTGGTGTGTTTTT................................................................................................................................... 201.000.00--1.00-----------------