ID: uc001qsd.2_intron_6_0_chr12_7078741_r.5p
GENE: (2)
chr12:7079159-7079408-


(1)
AGO1.ip 		(5)
B-CELL 		(2)
BRAIN 		(3)
BREAST 		(13)
CELL-LINE 		(1)
CERVIX 		(4)
HEART 		(3)
HELA 		(4)
LIVER 		(1)
OTHER 		(7)
SKIN 		(1)
XRN.ip

Sense strand
ATCGGTGGAGTGCAGCAGGACACTATCCTGGCCGAGGGCCTTCACTTCAGGTAATGGCGGGCAGAGCCTGCTGACCCTGACCTTTCACCCTTGACGCCGACCCAGCAGTGGCTATAGTCGGACGTGCAACAGGATTCAACGCTGCTCTTTTCCCACCCTCCTCATCCCTGCCCCTAGGATAGTGGGTGCTGCGAGAACCTCCAGCAGCATACAAACTGTTGTTTTCCAGAGGGACAAGAGAATCTCTCCT
.............................................................................................................................((..(((.........))).......(((((..((((.............))))..))))).)).............................................................
...........................................................................................................................124...............................................................190..........................................................
SizePerfect hitTotal NormPerfect NormSRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR029128(GSM416757)
H520. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM359187(GSM359187)
HepG2_2pM_1. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		GSM339995(GSM339995)
hues6NP. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040007(GSM532892)
G601T. (cervix)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR029130(GSM416759)
DLD2. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................................................................................ACAGGATTCAACGCTGACT.......................................................................................................19101.000.0074.008.009.008.00-----------------------------1.00--1.00--------
....................................................................................................................GTCGGACGTGCAACAGGAT...................................................................................................................1915.005.00----5.00----------------------------------------
..CGGTGGAGTGCAGCAGGA......................................................................................................................................................................................................................................1814.004.00---------------------1.00-1.00----1.00--1.00-------------
......................................................................................................................................................................CCTGCCCCTAGGATAGTGGG................................................................2014.004.00-----4.00---------------------------------------
...........................................................................................................................GTGCAACAGGATTCAACGCTG..........................................................................................................2112.002.00------2.00--------------------------------------
...............CAGGACACTATCCTGGCCGAGGGCCCTC...............................................................................................................................................................................................................282.000.00------------2.00--------------------------------
.........................................................................................................CAGTGGCTATAGTCGG.................................................................................................................................1612.002.00--------2.00------------------------------------
...GGTGGAGTGCAGCAGGACA....................................................................................................................................................................................................................................1912.002.00------------------------1.00-------1.00------------
.................................................................................................................................CAGGATTCAACGCTGACT.......................................................................................................182.000.002.00--------------------------------------------
.......................................................................................................AGCAGTGGCTATAGTCGGACGTGCAACA.......................................................................................................................2812.002.00-------2.00-------------------------------------
.....TGGAGTGCAGCAGGACACTAT................................................................................................................................................................................................................................2111.001.00---------1.00-----------------------------------
.................................................................................................................ATAGTCGGACGTGCAACAGGATTC.................................................................................................................2411.001.00-------------------------1.00-------------------
.....................................................................................................................................ATTCAACGCTGCTCTG.....................................................................................................161.000.00---------1.00-----------------------------------
...................................................................................................................................................................................................................................AGAGGGACAAGAGAACCAT....191.000.00-----------------------------1.00---------------
......................................................................................................................................................................................................................................GGGACAAGAGAATCTCTCCT2011.001.00----1.00----------------------------------------
............................................................................................................................................................................................................................GTTTTCCAGAGGGACAAGAGAATCTA....261.000.00------1.00--------------------------------------
.......................................................................................................AGCAGTGGCTATAGTCGGACGTGCA..........................................................................................................................2511.001.00--------------------------1.00------------------
...........................................................................................................GTGGCTATAGTCGGACGTGCAACAGG.....................................................................................................................2611.001.00-------1.00-------------------------------------
...GGTGGAGTGCAGCAGGAC.....................................................................................................................................................................................................................................1811.001.00----------------------------------------1.00----
.TCGGTGGAGTGCAGCAGGACA....................................................................................................................................................................................................................................2111.001.00----------------------------------1.00----------
....GTGGAGTGCAGCAGGACACT..................................................................................................................................................................................................................................2011.001.00-----1.00---------------------------------------
.....TGGAGTGCAGCAGGACACTATC...............................................................................................................................................................................................................................2211.001.00-----------------1.00---------------------------
..CGGTGGAGTGCAGCAGGACA....................................................................................................................................................................................................................................2011.001.00-1.00-------------------------------------------
..................................................................................................................TAGTCGGACGTGCAACAGGA....................................................................................................................2011.001.00---------------------------1.00-----------------
...................................................................................................................................................................................................................................AGAGGGACAAGAGAATTG.....181.000.00---------------------------------------1.00-----
...............................................................................................................CTATAGTCGGACGTGTC..........................................................................................................................171.000.00-----------1.00---------------------------------
............................................................GCAGAGCCTGCTGACCCTGA..........................................................................................................................................................................2011.001.00--------------------1.00------------------------
................................................................................................................................................................................................................ATACAAACTGTTGTTTTCCAGAGGGACAAGAGAA........3411.001.00----------------------1.00----------------------
........................ATCCTGGCCGAGGGCCTTCACTT...........................................................................................................................................................................................................2311.001.00-------------1.00-------------------------------
....................................................................................................................................................................................................................................GAGGGACAAGAGAATCT.....1711.001.00-----------------------------------1.00---------
........................ATCCTGGCCGAGGGCCTTCAC.............................................................................................................................................................................................................2111.001.00---------------1.00-----------------------------
..................................................................................................GACCCAGCAGTGGCTATAGTCGGACGT.............................................................................................................................2711.001.00--------------------------------------1.00------
.........................................................................................................................................................................GCCCCTAGGATAGTGGG................................................................1711.001.00-------1.00-------------------------------------
.........................................................................................................................................................................................................CAGCAGCATACAAACCGAG..............................191.000.00-----------1.00---------------------------------
..............................................................................................................GCTATAGTCGGACGTGCAACAGGATTCAAA..............................................................................................................301.000.00--------------1.00------------------------------
....................................................................................................................................................................................................................................GAGGGACAAGAGAATTGA....181.000.00----------------1.00----------------------------
...........................................................GGCAGAGCCTGCTGACCCTGATA........................................................................................................................................................................231.000.00-------------1.00-------------------------------
.................................................................................................................ATAGTCGGACGTGCAACAGGAT...................................................................................................................2211.001.00-------------------1.00-------------------------
.TCGGTGGAGTGCAGCAGGACACT..................................................................................................................................................................................................................................2311.001.00------------------1.00--------------------------
..............................................................................................................................CAACAGGATTCAACGCTGACT.......................................................................................................211.000.001.00--------------------------------------------
............................................................................................................TGGCTATAGTCGGACGTG............................................................................................................................1811.001.00------1.00--------------------------------------
................................................................................................................................ACAGGATTCAACGCTGACC.......................................................................................................191.000.001.00--------------------------------------------
...............................................................................................................................AACAGGATTCAACGCTGACT.......................................................................................................201.000.001.00--------------------------------------------
....GTGGAGTGCAGCAGGACA....................................................................................................................................................................................................................................1811.001.00----------1.00----------------------------------
........................................TTCACTTCAGGTAATGGC................................................................................................................................................................................................1820.500.50------------------------------------------0.50--
.TCGGTGGAGTGCAGC..........................................................................................................................................................................................................................................1520.500.50-------------------------------------------0.50-
..............................................................................................................................CAACAGGATTCAACGCT...........................................................................................................1720.500.500.50--------------------------------------------
.....................................................................................................................................................................................................CCTCCAGCAGCATAC......................................1550.200.20--------------------------------------------0.20

Antisense strand
ATCGGTGGAGTGCAGCAGGACACTATCCTGGCCGAGGGCCTTCACTTCAGGTAATGGCGGGCAGAGCCTGCTGACCCTGACCTTTCACCCTTGACGCCGACCCAGCAGTGGCTATAGTCGGACGTGCAACAGGATTCAACGCTGCTCTTTTCCCACCCTCCTCATCCCTGCCCCTAGGATAGTGGGTGCTGCGAGAACCTCCAGCAGCATACAAACTGTTGTTTTCCAGAGGGACAAGAGAATCTCTCCT
.............................................................................................................................((..(((.........))).......(((((..((((.............))))..))))).)).............................................................
...........................................................................................................................124...............................................................190..........................................................
SizePerfect hitTotal NormPerfect NormSRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR029128(GSM416757)
H520. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM359187(GSM359187)
HepG2_2pM_1. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		GSM339995(GSM339995)
hues6NP. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040007(GSM532892)
G601T. (cervix)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR029130(GSM416759)
DLD2. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................................................................................................................CAGGGATGAGGAGGGTGGG................................................................................ 1911.001.00--------------1.00------------------------------
..................CTCGGCCAGGATAGTGTC...................................................................................................................................................................................................................... 1811.001.00--------1.00------------------------------------
................................................................................................................................................................CTCATCCCTGCCCCTTGA........................................................................ 181.000.00-----------------------------------------1.00---
..............................GCCGAGGGCCTTCACGGG.......................................................................................................................................................................................................... 181.000.00---------------1.00-----------------------------
...........................................................................................................................................AGGGTGGGAAAAGAGCAGCG........................................................................................... 2011.001.00------1.00--------------------------------------