ID: uc001qqf.1_intron_4_0_chr12_6807271_r.5p
GENE: (1)
chr12:6809580-6809829-


(2)
AGO2.ip
(2)
B-CELL
(1)
BRAIN
(13)
BREAST
(11)
CELL-LINE
(9)
CERVIX
(1)
FIBROBLAST
(3)
HEART
(2)
LIVER
(2)
OTHER
(34)
SKIN
(1)
TESTES

Sense strand
GCTCAGTCCCGAGCGCCCGCAGTCGTCGCGCCGCCGCGCCAAGCATGCAGGTGAGTGAGAGGGACCCCCACGCCCCCACCCGCGGGGAGCCCGGCCCTGCCCTTCCCGGCTCCGCGCCCTGCGCCTCCTGCCCCTCCCGACGCGGTCCCTCGCCCGGGACAAGGCCTCCAGCCTCCCAGCGCCCCTTCCCCGAAGGGCTCTCCATCCCTCCGCGGTCCTGGCTCGCTCCCGCCCTCCCTGGCGCAGCCGT
...................................................................................((((((((((((.(((........(((...((((...)))).....)))..(((((..((((....)))).)))))..((((.....))))..))).)))...........)))))))))...............................................
..........................................................................75...................................................................................................................................208........................................
SizePerfect hitTotal NormPerfect NormSRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532871(GSM532871)
G652N. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577741(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189784GSM532877(GSM532877)
G691N. (cervix)
SRR040019(GSM532904)
G701T. (cervix)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189785SRR040008(GSM532893)
G727N. (cervix)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR040007(GSM532892)
G601T. (cervix)
SRR040025(GSM532910)
G613T. (cervix)
GSM532884(GSM532884)
G871T. (cervix)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
TAX577744(Rovira)
total RNA. (breast)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
TAX577588(Rovira)
total RNA. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
TAX577742(Rovira)
total RNA. (breast)
TAX577579(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
GSM532879(GSM532879)
G659N. (cervix)
TAX577738(Rovira)
total RNA. (breast)
TAX577453(Rovira)
total RNA. (breast)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................CCGCGGGGAGCCCGGCGGG........................................................................................................................................................1927.000.008.00-4.00-1.003.001.003.00--1.00-1.00-------------1.00-1.001.00------------------1.00----1.00-------------------------
...............................................................................CCGCGGGGAGCCCGGCGGGC.......................................................................................................................................................2020.000.005.00-5.00-2.00-1.00-----1.00--1.00-1.00------------1.00-------------1.001.00--------1.00------------------------
................................................................................CGCGGGGAGCCCGGCGG.........................................................................................................................................................1768.670.333.33--2.67------0.50-----0.170.17---------------------------------------0.330.17-0.170.17-------0.17-0.17-0.17-0.170.170.17-
................................................................................CGCGGGGAGCCCGGCGGG........................................................................................................................................................1866.330.331.83--2.50------0.50-------0.170.17------------------------------------------0.170.170.17---0.17-0.17-0.17-0.17----
...........................................................................................................................................................................................CCCCGAAGGGCTCTCGC..............................................174.000.00------1.00-------1.00--------1.00-------------------------1.00-----------------------------
.......................................................................GCCCCCACCCGCGGGGGCG................................................................................................................................................................193.000.00-2.00-------1.00---------------------------------------------------------------------
...................................................................................................................................................................................................................................CCCGCCCTCCCTGGCGGGGA...203.000.00-2.00-------1.00---------------------------------------------------------------------
........................................................................CCCCCACCCGCGGGGG..................................................................................................................................................................163.000.00-1.00-------1.00----------------------------------------1.00----------------------------
...................................................................................................................................................................................................................................CCCGCCCTCCCTGGCGGGG....193.000.00-2.00--1.00--------------------------------------------------------------------------
................................................................................CGCGGGGAGCCCGGCGGGC.......................................................................................................................................................1962.330.331.00--0.50------------------------------------------------------0.330.17-----0.17-0.17-----------
...............................................................................CCGCGGGGAGCCCGGCGG.........................................................................................................................................................182.000.001.00--------------------------------------------------1.00---------------------------
..............................................................................CCCGCGGGGAGCCCGGCGG.........................................................................................................................................................192.000.00-------------1.00--1.00--------------------------------------------------------------
.................................................................................................................GCGCCCTGCGCCTCCACCA......................................................................................................................192.000.00-----------2.00-------------------------------------------------------------------
...............................................................................CCGCGGGGAGCCCGGCG..........................................................................................................................................................172.000.001.00-1.00----------------------------------------------------------------------------
........................................................................................................CCCGGCTCCGCGCCCCGG................................................................................................................................181.000.00------------------------------------1.00------------------------------------------
............................................................................................................................................................................CTCCCAGCGCCCCTTCCCC...........................................................1911.001.00----------------------------------1.00--------------------------------------------
....................................................................................................................CCCTGCGCCTCCTGCCC.....................................................................................................................1711.001.00-----------------------------------1.00-------------------------------------------
........................................................................CCCCCACCCGCGGGGC..................................................................................................................................................................161.000.00-------------1.00-----------------------------------------------------------------
................CCGCAGTCGTCGCGCGCG........................................................................................................................................................................................................................181.000.00------------------------1.00------------------------------------------------------
...........................................................................................................................................................................................................ATCCCTCCGCGGTCCGCA.............................181.000.00-------------------------------1.00-----------------------------------------------
.......................CGTCGCGCCGCCGCGGCC.................................................................................................................................................................................................................181.000.00-------------------------------------------------------1.00-----------------------
.........................TCGCGCCGCCGCGCCGGG...............................................................................................................................................................................................................181.000.00-----------------------------------------1.00-------------------------------------
........................................................................................GCCCGGCCCTGCCCTCTTA...............................................................................................................................................191.000.00------------------------------------------1.00------------------------------------
...........................................................................................................................................................................................CCCCGAAGGGCTCTCGCTT............................................191.000.00----------------------------------------------1.00--------------------------------
..............................................................................CCCGCGGGGAGCCCGGCGGG........................................................................................................................................................201.000.00--------------------1.00----------------------------------------------------------
...................................................................................................................................................................................................................................CCCGCCCTCCCTGGCGGGGG...201.000.00--------------1.00----------------------------------------------------------------
........................................................................CCCCCACCCGCGGGGGG.................................................................................................................................................................171.000.00-1.00-----------------------------------------------------------------------------
.......................................................................GCCCCCACCCGCGGGGCC.................................................................................................................................................................181.000.00---------------------------------------1.00---------------------------------------
.............................................................................................................................................................................TCCCAGCGCCCCTTCAACC..........................................................191.000.00-------------------------1.00-----------------------------------------------------
................CCGCAGTCGTCGCGCGCGC.......................................................................................................................................................................................................................191.000.00-1.00-----------------------------------------------------------------------------
......................................................................CGCCCCCACCCGCGGGGA..................................................................................................................................................................1820.500.50---------------0.50---------------------------------------------------------------
................................................................................CGCGGGGAGCCCGGC...........................................................................................................................................................1560.330.33---------------------------------------------------------0.17--------0.17------------
.........................................................................CCCCACCCGCGGGGAG.................................................................................................................................................................1650.200.20-0.20-----------------------------------------------------------------------------
..................................................................................CGGGGAGCCCGGCCC.........................................................................................................................................................1570.140.14------------------------------------------------------------------------------0.14
..................................................................................CGGGGAGCCCGGCCCCC.......................................................................................................................................................1770.140.14--------------------0.14----------------------------------------------------------
..................................................................................CGGGGAGCCCGGCCCGAA......................................................................................................................................................1870.140.14---------------------0.14---------------------------------------------------------
...............................................................................CCGCGGGGAGCCCGG............................................................................................................................................................1590.110.110.11------------------------------------------------------------------------------

Antisense strand
GCTCAGTCCCGAGCGCCCGCAGTCGTCGCGCCGCCGCGCCAAGCATGCAGGTGAGTGAGAGGGACCCCCACGCCCCCACCCGCGGGGAGCCCGGCCCTGCCCTTCCCGGCTCCGCGCCCTGCGCCTCCTGCCCCTCCCGACGCGGTCCCTCGCCCGGGACAAGGCCTCCAGCCTCCCAGCGCCCCTTCCCCGAAGGGCTCTCCATCCCTCCGCGGTCCTGGCTCGCTCCCGCCCTCCCTGGCGCAGCCGT
...................................................................................((((((((((((.(((........(((...((((...)))).....)))..(((((..((((....)))).)))))..((((.....))))..))).)))...........)))))))))...............................................
..........................................................................75...................................................................................................................................208........................................
SizePerfect hitTotal NormPerfect NormSRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532871(GSM532871)
G652N. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577741(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189784GSM532877(GSM532877)
G691N. (cervix)
SRR040019(GSM532904)
G701T. (cervix)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189785SRR040008(GSM532893)
G727N. (cervix)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR040007(GSM532892)
G601T. (cervix)
SRR040025(GSM532910)
G613T. (cervix)
GSM532884(GSM532884)
G871T. (cervix)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
TAX577744(Rovira)
total RNA. (breast)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
TAX577588(Rovira)
total RNA. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
TAX577742(Rovira)
total RNA. (breast)
TAX577579(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
GSM532879(GSM532879)
G659N. (cervix)
TAX577738(Rovira)
total RNA. (breast)
TAX577453(Rovira)
total RNA. (breast)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................................................GAGCCCGGCCCTGCCA.................................................................................................................................................... 163.000.00--------3.00----------------------------------------------------------------------
..............................................................................................................................................................................................................................TCGCTCCCGCCCTCCTTT.......... 181.000.00----------------------------------------1.00--------------------------------------
..................................................................................................GCCCTTCCCGGCTCCGG....................................................................................................................................... 171.000.00-1.00-----------------------------------------------------------------------------
.......................CGTCGCGCCGCCGCGCCGG................................................................................................................................................................................................................ 191.000.00---------------------------------1.00---------------------------------------------
........................................................................................................CCCGGCTCCGCGCCCTT................................................................................................................................. 171.000.00---------------------1.00---------------------------------------------------------
..................................................................CCCACGCCCCCACCCGTTTT.................................................................................................................................................................... 201.000.00--------------------------------1.00----------------------------------------------
.............................................................................................................CTCCGCGCCCTGCGCAAG........................................................................................................................... 181.000.00--------------------------------------------------------1.00----------------------
................................................................................CGCGGGGAGCCCGGCCT......................................................................................................................................................... 1761.000.00-------------------1.00-----------------------------------------------------------
.............................................................................................................................................................................................................................CTCGCTCCCGCCCTCCA............ 171.000.00--------------------------------------1.00----------------------------------------
..................................................................CCCACGCCCCCACCCGA....................................................................................................................................................................... 171.000.00------------------1.00------------------------------------------------------------
.................................................................................GCGGGGAGCCCGGCCTC........................................................................................................................................................ 171.000.00----------------------1.00--------------------------------------------------------
.................................................................CCCCACGCCCCCACCTAGC...................................................................................................................................................................... 191.000.00---------------------------1.00---------------------------------------------------
..................................................................CCCACGCCCCCACCCGTT...................................................................................................................................................................... 181.000.00-------------------------------------1.00-----------------------------------------
...................................................................CCACGCCCCCACCCGCGCGCT.................................................................................................................................................................. 211.000.00----------------------------------------------------1.00--------------------------
...................................................................CCACGCCCCCACCCGCTTT.................................................................................................................................................................... 191.000.00-----------------------------------------------1.00-------------------------------
..........................CGCGCCGCCGCGCCAGGAT............................................................................................................................................................................................................. 191.000.00-------------------------------------------1.00-----------------------------------