ID: uc001qpv.3_intron_1_0_chr12_6760552_r.5p
GENE: (6)
chr12:6761237-6761486-


(2)
AGO2.ip 		(2)
B-CELL 		(12)
BRAIN 		(5)
BREAST 		(11)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(1)
HELA 		(2)
LIVER 		(3)
OTHER 		(10)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TTTGTCACCAGGTCTCCTATGGAGAGATGATTGGCTGTGACAACCCTGATGTGAGAAACATTTTGCCTTAGGATGGGGGGTTGTGAGGGGCATGAAGGGAGTGGGTACAAGAGGGAAAATCCCACAGTTGAGTACTGGGACTTCAGAATAGAAGAAAGATGGGCTGGACGTAGTAGCTCTTGCCTGAAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCACGTGAGGTCAGGAGTTTGAGACCAGC
.................................................................(((((.(((.....))).)))))............(((((...............))))).(((.(((.......((((......))))........))).))).................................................................................
...............................................................64............................................................................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormGSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR189782GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577580(Rovira)
total RNA. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
....................................................................TAGGATGGGGGGTTGTA.....................................................................................................................................................................1714.000.003.004.00--1.001.00-1.00--1.00-----2.00---------------------1.00-------------
....................................................................TAGGATGGGGGGTTGTAGGT..................................................................................................................................................................209.000.002.001.00--1.00--1.00-2.001.00-----------------------1.00-----------------
....................................................................TAGGATGGGGGGTTGTAGGG..................................................................................................................................................................208.000.00----1.001.00-2.001.001.001.00----------1.00------------------------------
....................................................................TAGGATGGGGGGTTGTAG....................................................................................................................................................................185.000.00----1.002.00--1.00-1.00-----------------------------------------
...................................................................................................................................................ATAGAAGAAAGATGGGCTGGACG................................................................................2314.004.00------4.00---------------------------------------------
....................................................................TAGGATGGGGGGTTGTAT....................................................................................................................................................................184.000.001.001.00---1.00--1.00-------------------------------------------
....................................................................TAGGATGGGGGGTTGTATGG..................................................................................................................................................................204.000.003.001.00--------------------------------------------------
....................................................................TAGGATGGGGGGTTGTAGG...................................................................................................................................................................193.000.00----2.00---1.00-------------------------------------------
...............................................................................................................................................................................................................................ACGTGAGGTCAGGAGTT..........1703.003.00--------------3.00-------------------------------------
....................................................................TAGGATGGGGGGTTGTT.....................................................................................................................................................................172.000.00-------1.00-----------------------------------1.00--------
....................................................................TAGGATGGGGGGTTGAAA....................................................................................................................................................................182.000.00-----1.00------------------1.00---------------------------
....................................................................TAGGATGGGGGGTTGAAAA...................................................................................................................................................................192.000.00-1.00--1.00-----------------------------------------------
.........................................................................................................................................................GAAAGATGGGCTGGACGTAGTAG..........................................................................2312.002.00------2.00---------------------------------------------
....................................................................TAGGATGGGGGGTTGTATAG..................................................................................................................................................................202.000.001.00--------1.00------------------------------------------
.......................................................................................................................................................................................................TTGGGAGGCTGAGGCGGGCAGACTC..........................252.000.00--2.00-------------------------------------------------
...............CCTATGGAGAGATGATTGGCTGTGACAAC..............................................................................................................................................................................................................2912.002.00----------------------2.00-----------------------------
....................................................................TAGGATGGGGGGTTGTGTGGG.................................................................................................................................................................212.000.001.00--------------------------1.00------------------------
....................................................................TAGGATGGGGGGTTGTAA....................................................................................................................................................................182.000.00----------------1.00----1.00------------------------------
........................AGATGATTGGCTGTGACAACCC............................................................................................................................................................................................................2212.002.00------------------2.00---------------------------------
....................................................................TAGGATGGGGGGTTGTATA...................................................................................................................................................................192.000.00-1.00-------1.00------------------------------------------
....................................................................TAGGATGGGGGGTTGAA.....................................................................................................................................................................172.000.001.001.00--------------------------------------------------
....................................................................TAGGATGGGGGGTTGTATGT..................................................................................................................................................................202.000.001.00---------1.00-----------------------------------------
......................AGAGATGATTGGCTGTGACAACCCTGATGT......................................................................................................................................................................................................3012.002.00-----------------2.00----------------------------------
....................GGAGAGATGATTGGCTGTGA..................................................................................................................................................................................................................2011.001.00------------1.00---------------------------------------
....................................................................................................................................................................................................ACTTTGGGAGGCTGAGGCGGGCAGACCAG.........................291.000.00--1.00-------------------------------------------------
....................................................................................................................................................................................................ACTTTGGGAGGCTGAGGCGGGCAGAGCG..........................281.000.00---1.00------------------------------------------------
................CTATGGAGAGATGATTGGCTGTGAC.................................................................................................................................................................................................................2511.001.00------------------------------------------------1.00---
........................................................................................................................................................................................................TGGGAGGCTGAGGCGGGCAGACACG.........................251.000.00--1.00-------------------------------------------------
........................................................................................................................................................................................................TGGGAGGCTGAGGCGGGCAGATGGG.........................251.000.00---1.00------------------------------------------------
....................................................................TAGGATGGGGGGTTGTAGA...................................................................................................................................................................191.000.00---------1.00------------------------------------------
..........................ATGATTGGCTGTGACAACCCTG..........................................................................................................................................................................................................2211.001.00------------------------------------------1.00---------
........................AGATGATTGGCTGTGACAACCCTGAA........................................................................................................................................................................................................261.000.00-------------1.00--------------------------------------
........................................................................................................................................................................................................TGGGAGGCTGAGGCGGGCAGACACC.........................251.000.00--1.00-------------------------------------------------
...................................................................................................................................................ATAGAAGAAAGATGGGCTGGA..................................................................................2111.001.00------1.00---------------------------------------------
....................................................................TAGGATGGGGGGTTGTAGGA..................................................................................................................................................................201.000.00---------------------------------------------1.00------
...........................................................................................................................ACAGTTGAGTACTGGGACT............................................................................................................1911.001.00-------------------1.00--------------------------------
..............................................................TTGCCTTAGGATGGGGGGTTGTGAGGGGC...............................................................................................................................................................2911.001.00--1.00-------------------------------------------------
....................................................................TAGGATGGGGGGTTGTAGAA..................................................................................................................................................................201.000.00----1.00-----------------------------------------------
........................AGATGATTGGCTGTGACAACCCTGAT........................................................................................................................................................................................................2611.001.00-------------1.00--------------------------------------
....................................................................TAGGATGGGGGGTTGTTTTG..................................................................................................................................................................201.000.00---------------1.00------------------------------------
.......................................................................................................................................................................................................TTGGGAGGCTGAGGCGGGCAGACCCC.........................261.000.00---1.00------------------------------------------------
......................AGAGATGATTGGCTGTGA..................................................................................................................................................................................................................1811.001.00----------------------------1.00-----------------------
.......................................................................................................................................................................................................TTGGGAGGCTGAGGCGGGCATTGC...........................241.000.00---1.00------------------------------------------------
.................TATGGAGAGATGATTGGCTGTGAC.................................................................................................................................................................................................................2411.001.00------------------------------------1.00---------------
........................AGATGATTGGCTGTGACTA...............................................................................................................................................................................................................191.000.00------------1.00---------------------------------------
...............................................................................................................................................................................................CCAGCACTTTGGGAGGCTGAGGCGCCGC...............................281.000.00-----------1.00----------------------------------------
..............................................................................................AAGGGAGTGGGTACAAGTAGA.......................................................................................................................................211.000.00--------1.00-------------------------------------------
....................................................................TAGGATGGGGGGTTGTGTGTG.................................................................................................................................................................211.000.00-------------------------------------------------1.00--
.....................GAGAGATGATTGGCTGTGT..................................................................................................................................................................................................................191.000.00------------1.00---------------------------------------
....................................................................TAGGATGGGGGGTTGTGGGAA.................................................................................................................................................................211.000.00--------1.00-------------------------------------------
...............................................................................................................................................................................................................CTGAGGCGGGCAGATCTCTG.......................201.000.00-----------------------------------------------1.00----
...........................................................................................................................................................................................................GAGGCTGAGGCGGGCAGATCAAGG.......................241.000.00--------------------------------1.00-------------------
....................................................................TAGGATGGGGGGTTGTATCT..................................................................................................................................................................201.000.00-1.00--------------------------------------------------
....................................................................TAGGATGGGGGGTTGCAGG...................................................................................................................................................................191.000.001.00---------------------------------------------------
...................................................................................................................................................................................................CACTTTGGGAGGCTGAGGCGGGCAGACACC.........................301.000.00--1.00-------------------------------------------------
.................................................................................................................................GAGTACTGGGACTTCAGAATA....................................................................................................2111.001.00---------------------------------1.00------------------
...................................................................................................................................................................CTGGACGTAGTAGCTCTG.....................................................................181.000.00-----------1.00----------------------------------------
....................................................................................................................................................TAGAAGAAAGATGGGCTGGACAA...............................................................................231.000.00-------------------------------1.00--------------------
..................................................................................................................................................AATAGAAGAAAGATGGGCTGGAC.................................................................................2311.001.00-----------------------------1.00----------------------
.......................................................................................................................................................................................................TTGGGAGGCTGAGGCGGGCAGTAA...........................241.000.00---------------1.00------------------------------------
..............TCCTATGGAGAGATGATTGGCTGTGACAACC.............................................................................................................................................................................................................3111.001.00--------------------1.00-------------------------------
........................................................................................................................................................................................................TGGGAGGCTGAGGCGGGCAGAGCCC.........................251.000.00---1.00------------------------------------------------
...................TGGAGAGATGATTGGCTGTGACAACCCTGAT........................................................................................................................................................................................................3111.001.00-------------1.00--------------------------------------
........................................................................................GGCATGAAGGGAGTGCGGC...............................................................................................................................................191.000.00-----------------------------------1.00----------------
............TCTCCTATGGAGAGAGG.............................................................................................................................................................................................................................171.000.00--1.00-------------------------------------------------
..........................ATGATTGGCTGTGACAACCCTGATT.......................................................................................................................................................................................................251.000.00----------------------------------------------1.00-----
.......................GAGATGATTGGCTGTGACAACC.............................................................................................................................................................................................................2211.001.00-----1.00----------------------------------------------
....................................................................................................................................................................................................ACTTTGGGAGGCTGAGGCGGGCAGATCTGG........................301.000.00---1.00------------------------------------------------
....................................................................................................................................................................................................................GCGGGCAGATCACGTGAGGTCAGGAGTCCG........301.000.00--------------------------------------------------1.00-
....................................................................TAGGATGGGGGGTTGTGGGGT.................................................................................................................................................................211.000.001.00---------------------------------------------------
.....................................................................................................................................................................................................................CGGGCAGATCACGTGAGGTCAGGAGTCCG........291.000.00---1.00------------------------------------------------
....................................................................TAGGATGGGGGGTTGTGGG...................................................................................................................................................................191.000.00----1.00-----------------------------------------------
.......................GAGATGATTGGCTGTGACA................................................................................................................................................................................................................1921.001.00-0.50---0.50----------------------------------------------
........................................................................................................................................................................................................TGGGAGGCTGAGGCGGGCAGACCCC.........................251.000.00---1.00------------------------------------------------
......................AGAGATGATTGGCTGTGACAACCCTG..........................................................................................................................................................................................................2611.001.00--------------------1.00-------------------------------
.................................................................................................................................................GAATAGAAGAAAGATGGGCTGGACG................................................................................2511.001.00---------------------------------------1.00------------
....................................................................................................................................................TAGAAGAAAGATGGGCTGGACGTAGT............................................................................2611.001.00-------------------1.00--------------------------------
.......................GAGATGATTGGCTGTGACAACCCTGA.........................................................................................................................................................................................................2611.001.00-----------------------1.00----------------------------
.......................................................................................................................................................................................................TTGGGAGGCTGAGGCGGGCAGTAAA..........................251.000.00---------------1.00------------------------------------
...........................TGATTGGCTGTGACAACCCTGATTG......................................................................................................................................................................................................251.000.00-------------------------1.00--------------------------
....................................................................................................................................................................................................ACTTTGGGAGGCTGAGGCGGGCAGACACC.........................291.000.00--1.00-------------------------------------------------
....................................................................TAGGATGGGGGGTTGTACGT..................................................................................................................................................................201.000.00-------1.00--------------------------------------------
....................................................................TAGGATGGGGGGTTGAGG....................................................................................................................................................................181.000.00--------------------------1.00-------------------------
........................AGATGATTGGCTGTGACAA...............................................................................................................................................................................................................1920.500.50------------0.50---------------------------------------
.......................GAGATGATTGGCTGTGA..................................................................................................................................................................................................................1730.330.33-----------------------0.33----------------------------
.......................GAGATGATTGGCTGTG...................................................................................................................................................................................................................1640.250.25---------------------------------------------------0.25

Antisense strand
TTTGTCACCAGGTCTCCTATGGAGAGATGATTGGCTGTGACAACCCTGATGTGAGAAACATTTTGCCTTAGGATGGGGGGTTGTGAGGGGCATGAAGGGAGTGGGTACAAGAGGGAAAATCCCACAGTTGAGTACTGGGACTTCAGAATAGAAGAAAGATGGGCTGGACGTAGTAGCTCTTGCCTGAAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCACGTGAGGTCAGGAGTTTGAGACCAGC
.................................................................(((((.(((.....))).)))))............(((((...............))))).(((.(((.......((((......))))........))).))).................................................................................
...............................................................64............................................................................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormGSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR189782GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577580(Rovira)
total RNA. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
.........................................................................................................................................................................................GAAATCCCAGCACTTTGGGATAG.......................................... 232.000.00-----------2.00----------------------------------------
........................................................................................................................................................................................TGAAATCCCAGCACTCCCA............................................... 191.000.00--------------------------------------------1.00-------
........................................................................................................................................................................................................TGGGAGGCTGAGGCGGGCCTTA............................ 221.000.00----------------------------------------1.00-----------
................................................................................TTGTGAGGGGCATGAGCC........................................................................................................................................................ 181.000.00-------------------------------------1.00--------------
.........................................................................................................................................................................................GAAATCCCAGCACTTTGGA.............................................. 191.000.00------------------------------1.00---------------------
.............................................................................................................................................................................................................GGCTGAGGCGGGCAGATCACGTCC..................... 241.000.00--1.00-------------------------------------------------
..................................................................................................................................................................................CTTGCCTGAAATCCCAGCACTTGCC............................................... 251.000.00---1.00------------------------------------------------
.........................................................................................................................................................................................................CGTGATCTGCCCGCCTCAGCCTCCC........................ 2501.001.00-----------------------------------------1.00----------