ID: uc001qpn.2_intron_9_0_chr12_6690981_r
GENE: (29)
chr12:6690931-6691352-


(1)
AGO1.ip 		(4)
AGO2.ip 		(6)
B-CELL 		(3)
BRAIN 		(10)
BREAST 		(22)
CELL-LINE 		(4)
CERVIX 		(5)
HEART 		(6)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(23)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GCCAGCATGTCCTTACTAGAATTGGTGTTATGTCTTTGATTCGCAAGAAGGTGAGCCCTGAGCCTCTTGCCATTGTTTCTAGGGGGCCAGGCGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACTTGAGGTCAGGAGTTAGAGACTAGCCTGGTCAACATGGCGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGCACGTGGTGGCGGGCACCTGTATTCCCAGCTACTCAGAAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGCGGAGACTGGAAGGCCAATAGGAAAGGAGCCTGTAGCTGGAATTGGGTCTTCAACTTCTTGTCCCATTGCTACAGGTTCAGGAGTTTGAACATGTTAATGGGCGCTGGAGCATGCCTGAACTGGC
...................................................(((((((((.((((...(((.(((....)))..))).)))).))).))))))(((((((..((((((....)))))).......)))))))........................................................................................................................................................................................................................................................................................
..................................................51...............................................................................................148................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015362(GSM380327)
NaÌøve B Cell (Naive138). (B cell)		TAX577579(Rovira)
total RNA. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189784SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189782SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040009(GSM532894)
G727T. (cervix)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040007(GSM532892)
G601T. (cervix)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR040012(GSM532897)
G648N. (cervix)		SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
..........................................................................................................................TTGGGAGGCTGAGGCGGGTTTT......................................................................................................................................................................................................................................................................................228.000.00--8.00-----------------------------------------------------------------------------------
........GTCCTTACTAGAATTGG.............................................................................................................................................................................................................................................................................................................................................................................................................1713.003.00----3.00---------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................AATGGGCGCTGGAGC..............1512.002.00-----1.00-------------------------------------------------------------------------1.00------
.................................................................................................................................................................................................................................................................................................................................................................................................AACATGTTAATGGGCGCTGG.................2012.002.00-------2.00------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................AGGAGTTTGAACATGTTAATGGGCGCTGGAGC..............3212.002.00---2.00----------------------------------------------------------------------------------
.....................................................................................................................................AGGCGGGTGGATCACTTGAGGTCAGGAGCCC..................................................................................................................................................................................................................................................................312.000.002.00-------------------------------------------------------------------------------------
............................................................................................................................................TGGATCACTTGAGGTCAGGCTCG...................................................................................................................................................................................................................................................................232.000.002.00-------------------------------------------------------------------------------------
.....................TTGGTGTTATGTCTTTGATT.............................................................................................................................................................................................................................................................................................................................................................................................2012.002.00-----------------2.00--------------------------------------------------------------------
..............................................................................................................................GAGGCTGAGGCGGGTGGATAAAA.................................................................................................................................................................................................................................................................................232.000.00-------------------------2.00------------------------------------------------------------
................................................................................................................................................................................................................................................................................AGGAGAATTGCTTGAACCCGGGAGGCG...........................................................................................................................2702.002.00---------2.00----------------------------------------------------------------------------
..................................................GTGAGCCCTGAGCCTCTTG.................................................................................................................................................................................................................................................................................................................................................................1912.002.00----------------2.00---------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGTTTGAACATGTTAATGG........................1912.002.00---------------------2.00----------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................TCAGGAGTTTGAACATTGGG............................201.000.00-----------------------------------------------------------1.00--------------------------
....................................................................................................................................................................................................................................................................GAAGGCTGAGGCAGGAGAGGAA............................................................................................................................................221.000.00----------------------------------1.00---------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................GAACATGTTAATGGGCGCTGGAGCATGC..........2811.001.00--------------------------------------------------------------------------1.00-----------
................................................................................................................................................................................................................................................................................AGGAGAATTGCTTGAACCCGGTAGC.............................................................................................................................251.000.00--------------------------------1.00-----------------------------------------------------
.....................TTGGTGTTATGTCTTTGATTCGC..........................................................................................................................................................................................................................................................................................................................................................................................2311.001.00------------------------------------------------------1.00-------------------------------
............................................................................................................................GGGAGGCTGAGGCGGGTGGAAAG...................................................................................................................................................................................................................................................................................231.000.00-------------------------------------------------------------------1.00------------------
............................................................................................................................................................................................................................................................................................................................................................................................GTTTGAACATGTTAATGGGC......................2011.001.00----------------------------1.00---------------------------------------------------------
...........................................................................................................................................................................................................................................................AGCTACTCAGAAGGCTGAGGCAGGAGAAAAG............................................................................................................................................311.000.00-1.00------------------------------------------------------------------------------------
........................................................................................AGGCGCAGTGGCTCACACCGC.........................................................................................................................................................................................................................................................................................................................211.000.00-1.00------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................GGAGCCTGTAGCTGGAAGCG................................................................................201.000.00-------------1.00------------------------------------------------------------------------
...........................................................................................................................................GTGGATCACTTGAGGTCAGGCAT....................................................................................................................................................................................................................................................................231.000.00------------------------------------------------------------------1.00-------------------
...................................................................................................................................................................AGAGACTAGCCTGGTCAACATAGCG..........................................................................................................................................................................................................................................251.000.00-1.00------------------------------------------------------------------------------------
......ATGTCCTTACTAGAATTGGTGTT.........................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00--------------1.00-----------------------------------------------------------------------
........................................................................................AGGCGCAGTGGCTCACACCTTT........................................................................................................................................................................................................................................................................................................................221.000.00-----------1.00--------------------------------------------------------------------------
............................................................................................................................GGGAGGCTGAGGCGGGTGGCGGC...................................................................................................................................................................................................................................................................................231.000.00-1.00------------------------------------------------------------------------------------
.......................................................................ATTGTTTCTAGGGGGTAGG............................................................................................................................................................................................................................................................................................................................................191.000.00----1.00---------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................TTGAACCCGGGAGGCGGAGACTGGAAGGCC.............................................................................................................3011.001.00-------------------------------------------------------1.00------------------------------
...................................................................................................................................................................................................................................................................AGAAGGCTGAGGCAGGAGAACTGA...........................................................................................................................................241.000.00-1.00------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................TCAGGAGTTTGAACATGTTAATGGG.......................2511.001.00----------------------------------------------------1.00---------------------------------
..............................................................................................................................................................................................................................................................................................AACCCGGGAGGCGGAGACTGAGG.................................................................................................................231.000.00-1.00------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGTTTGAACATGTTAATGGGCGCTGGAGCATGC..........3311.001.00-----1.00--------------------------------------------------------------------------------
.................AGAATTGGTGTTATGTCTTTGATTC............................................................................................................................................................................................................................................................................................................................................................................................2511.001.00--------------------------------------------------------------------------------1.00-----
......................TGGTGTTATGTCTTTGATTCGCAAGAAG....................................................................................................................................................................................................................................................................................................................................................................................2811.001.00-----1.00--------------------------------------------------------------------------------
...............................GTCTTTGATTCGCAAGAAGG...................................................................................................................................................................................................................................................................................................................................................................................2011.001.00---------------1.00----------------------------------------------------------------------
..........................................................................................................................TTGGGAGGCTGAGGCGGGTGGCTA....................................................................................................................................................................................................................................................................................241.000.00---------------------------------------------------------------------1.00----------------
.................................CTTTGATTCGCAAGAAGGTGA................................................................................................................................................................................................................................................................................................................................................................................2111.001.00--------------------1.00-----------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................ACATGTTAATGGGCGGTG..................181.000.00-------------1.00------------------------------------------------------------------------
............................................................................................................................GGGAGGCTGAGGCGGGTGGAATTT..................................................................................................................................................................................................................................................................................241.000.00-----------------------1.00--------------------------------------------------------------
...................................................................................................................................TGAGGCGGGTGGATCACTTTAAG............................................................................................................................................................................................................................................................................231.000.00------------------------1.00-------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................AGGCGGAGACTGGAAGGC..............................................................................................................1811.001.00------------------------------------------------------------------------------1.00-------
...................AATTGGTGTTATGTCTTTGATTCGCAAGAAGGT..................................................................................................................................................................................................................................................................................................................................................................................3311.001.00-----1.00--------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................ACAGGTTCAGGAGTTCTAC...................................191.000.00---------------------------------------1.00----------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................CAGGAGTTTGAACATGTTAATGGG.......................2411.001.00---------------------------1.00----------------------------------------------------------
....................................................................................................................................................TTGAGGTCAGGAGTTAGA................................................................................................................................................................................................................................................................1801.001.00----------1.00---------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................AATGGGCGCTGGAGCATGCC.........2011.001.00----------------------------------------1.00---------------------------------------------
..................................................................................................................CCAGCACTTTGGGAGGCTGAGGCGCCGC........................................................................................................................................................................................................................................................................................281.000.00------------1.00-------------------------------------------------------------------------
...................AATTGGTGTTATGTCTTTGATTCGCAAGA......................................................................................................................................................................................................................................................................................................................................................................................2911.001.00---------------------------------------------1.00----------------------------------------
...................................................................................................................................................................AGAGACTAGCCTGGTCAACGGCG............................................................................................................................................................................................................................................231.000.001.00-------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................GGAGAATTGCTTGAACCCGGGAGGCG...........................................................................................................................2601.001.00-----------------------------------------------------------------------------1.00--------
...............................................................................................................................................................................................................................................................................................................................................................CTTCTTGTCCCATTGCTACAGGTTCAGGA..........................................2911.001.00----------------------------------------------------------------------------1.00---------
..................................................................................................................................................................................CAACATGGCGAAACCCCATCTGAAA...........................................................................................................................................................................................................................251.000.00---------------------------------------------------1.00----------------------------------
...................................................................................................................................TGAGGCGGGTGGATCACTCTA..............................................................................................................................................................................................................................................................................211.000.00------1.00-------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................TTTGAACATGTTAATGGGCGCTGGAG...............2611.001.00-------------------1.00------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................CGCTGGAGCATGCCTGAACTGGC2311.001.00--------1.00-----------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGTTTGAACATGTTAATGGGCGCTGGAGC..............2911.001.00---------------1.00----------------------------------------------------------------------
...................................................................................................................................................................................................................................................................AGAAGGCTGAGGCAGGAGAATTGCTTGACCTC...................................................................................................................................321.000.001.00-------------------------------------------------------------------------------------
..........................GTTATGTCTTTGATTCGCAAGAAG....................................................................................................................................................................................................................................................................................................................................................................................2411.001.00---------------------------------------------------------------------------------1.00----
........................................................................................................................................................................................................................................................................................................................CAATAGGAAAGGAGCCTGTAGCTGGAATTGG...............................................................................3111.001.00--------------------------------------------------1.00-----------------------------------
..............................................GAAGGTGAGCCCTGAGGC......................................................................................................................................................................................................................................................................................................................................................................181.000.00-----------------------------------1.00--------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGAGTTTGAACTCTG..............................201.000.00--------------------------------------1.00-----------------------------------------------
................................................................................................................................................................................................................................................................................................CCCGGGAGGCGGAGACGGGG..................................................................................................................201.000.00-1.00------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................AACATGTTAATGGGCGCTGGAGCATT...........261.000.00---1.00----------------------------------------------------------------------------------
............................................................................................................................................TGGATCACTTGAGGTCAGGCTTG...................................................................................................................................................................................................................................................................231.000.001.00-------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................GTGGTGGCGGGCACCTTTTG...............................................................................................................................................................................201.000.00----1.00---------------------------------------------------------------------------------
..........................GTTATGTCTTTGATTCGCAAGAAGGT..................................................................................................................................................................................................................................................................................................................................................................................2611.001.00--------------------------1.00-----------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................GGAGACTGGAAGGCCAATAGGA......................................................................................................2211.001.00--------------------------1.00-----------------------------------------------------------
.......................................................................................................................ACTTTGGGAGGCTGAGGCGGGTGGCCG....................................................................................................................................................................................................................................................................................271.000.00-1.00------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................CAATAGGAAAGGAGCCTGTA..........................................................................................2011.001.00-------------------------------------1.00------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGTTTGAACATGTTAATGGGC......................2111.001.00--------1.00-----------------------------------------------------------------------------
..............................................................................................................................GAGGCTGAGGCGGGTGGATCAAGAT...............................................................................................................................................................................................................................................................................251.000.00---------------------------------------------------------------------------1.00----------
..............................................................................................................................................................................................................................................................................................................................................................................CTACAGGTTCAGGAGTT.......................................1711.001.00------------------------------------1.00-------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................TTCAGGAGTTTGAACATGTTAATGGGCG.....................2811.001.00------------------1.00-------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................AGGAGTTTGAACATGTTAATGGG.......................2311.001.00--------------------------------------------1.00-----------------------------------------
............................................................................................................................................................................................................................................................................AGGCAGGAGAATTGCTTGAACCCGGGCAT.............................................................................................................................291.000.00-1.00------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCATGCCTGAACTGG.1911.001.00-----1.00--------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................AGAAGGCTGAGGCAGGAGAGCC.............................................................................................................................................2201.001.00-1.00------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................GAAGGCTGAGGCAGGAGAATTGCTTG........................................................................................................................................2601.001.00-----------------------1.00--------------------------------------------------------------
...................................................................................................................................TGAGGCGGGTGGATCACTTTACT............................................................................................................................................................................................................................................................................231.000.00-------------1.00------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................TCAGGAGTTTGAACATGTTAATGGGCGC....................2811.001.00--------1.00-----------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................GGAGTTTGAACATGTTAATGGGCGCTGGAG...............3011.001.00---1.00----------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................AGAAGGCTGAGGCAGGGGGT...............................................................................................................................................201.000.00------------------------------------------------------------------------1.00-------------
............................................................................................................................................TGGATCACTTGAGGTCAGGCCC....................................................................................................................................................................................................................................................................221.000.001.00-------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................TTAATGGGCGCTGGAGCAT............1911.001.00---------------------------------------------------------1.00----------------------------
.....................................................................................................................................AGGCGGGTGGATCACTTGAGGGAGG........................................................................................................................................................................................................................................................................251.000.001.00-------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................TTGAACCCGGGAGGCGGAGAAGA....................................................................................................................231.000.00-------------------1.00------------------------------------------------------------------
.........................TGTTATGTCTTTGATTCGCAAGAAGG...................................................................................................................................................................................................................................................................................................................................................................................2611.001.00-------1.00------------------------------------------------------------------------------
......................................................................................CCAGGCGCAGTGGCTCACACCCGTG.......................................................................................................................................................................................................................................................................................................................251.000.00-------------------------------1.00------------------------------------------------------
............................................................................................................................................................................CCTGGTCAACATGGCGAAACCCCATA................................................................................................................................................................................................................................261.000.001.00-------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................AGAAGGCTGAGGCAGGAGAAACCC...........................................................................................................................................241.000.00-1.00------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................TTAATGGGCGCTGGAGCATGC..........2111.001.00------------------1.00-------------------------------------------------------------------
............................................................................................................................................................................................................................................................................AGGCAGGAGAATTGCTTGAACCCGGGAGGCGGA.........................................................................................................................3301.001.00-----------1.00--------------------------------------------------------------------------
.....................................................................................................................................AGGCGGGTGGATCACTTGAGGTCAGGAGCCCG.................................................................................................................................................................................................................................................................321.000.001.00-------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................AGAAGGCTGAGGCAGGAGA................................................................................................................................................1901.001.00----------------1.00---------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGGAGTTTGAACATGTTAATGG........................2711.001.00----------------------1.00---------------------------------------------------------------
....GCATGTCCTTACTAGAATTGGTG...........................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00--------------------------------------------------------------1.00-----------------------
...........................................................................................................................................................................................................................................................................................TTGAACCCGGGAGGCGGAGACTT....................................................................................................................231.000.00-----------------------------------------------------------------------1.00--------------
............................................................................................................................................................................................................................................................................................TGAACCCGGGAGGCGGTG........................................................................................................................181.000.00----------1.00---------------------------------------------------------------------------
............................................................................................................................GGGAGGCTGAGGCGGGTTGTG.....................................................................................................................................................................................................................................................................................211.000.00-1.00------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................TTGAACATGTTAATGGGCGCTGGAGC..............2611.001.00--------1.00-----------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................TGTTAATGGGCGCTGGAGCATGCCTG.......2611.001.00------------------------------------------------------------1.00-------------------------
.................................................................................................................CCCAGCACTTTGGGAGGCTGAGGCGGGTGGCGG....................................................................................................................................................................................................................................................................................331.000.00-------------------------------------------------1.00------------------------------------
..........................................................................................................................TTGGGAGGCTGAGGCGGGTGGATGC...................................................................................................................................................................................................................................................................................251.000.00-1.00------------------------------------------------------------------------------------
...................................................................................................................................TGAGGCGGGTGGATCACTCT...............................................................................................................................................................................................................................................................................201.000.00------1.00-------------------------------------------------------------------------------
............................................................................................................................................................................CCTGGTCAACATGGCGAAACCCC...................................................................................................................................................................................................................................2301.001.00-----------------------------------------------------------------1.00--------------------
................................................................................................................................................................................................................................................................................AGGAGAATTGCTTGAACCCGGGAGGCGGAG........................................................................................................................3001.001.00-----------1.00--------------------------------------------------------------------------
........................................................................................AGGCGCAGTGGCTCACACCTGTACA.....................................................................................................................................................................................................................................................................................................................251.000.00----------------------------------------------1.00---------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGGAGTTTGAACTCTG..............................211.000.00------------------------------------------1.00-------------------------------------------
..............................................................................................................................................................................................................................................................................GCAGGAGAATTGCTTGAACCCGGGAGGCGCAA........................................................................................................................321.000.00--------------------------------------------------------1.00-----------------------------
..................................................................................................................................................................................................................................................................................................................................................................................AGGTTCAGGAGTTTGAACATGTTAATGGG.......................2911.001.00---------------1.00----------------------------------------------------------------------
..........................................................................................................................TTGGGAGGCTGAGGCGGGTTTAG.....................................................................................................................................................................................................................................................................................231.000.00--------------1.00-----------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................TGGGCGCTGGAGCATGCC.........1820.500.50------------------------------------------------------------------------------------0.50-
.....................TTGGTGTTATGTCTTTGAT..............................................................................................................................................................................................................................................................................................................................................................................................1920.500.50-------------------------------------------------------------------------------------0.50
.......................................................................................................................................................................................................................................................................................................................................................................................CAGGAGTTTGAACATG...............................1650.200.20-----------------0.20--------------------------------------------------------------------
...............................................................................TAGGGGGCCAGGCGCAGTGGCTC................................................................................................................................................................................................................................................................................................................................2350.200.200.20-------------------------------------------------------------------------------------

Antisense strand
GCCAGCATGTCCTTACTAGAATTGGTGTTATGTCTTTGATTCGCAAGAAGGTGAGCCCTGAGCCTCTTGCCATTGTTTCTAGGGGGCCAGGCGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACTTGAGGTCAGGAGTTAGAGACTAGCCTGGTCAACATGGCGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGCACGTGGTGGCGGGCACCTGTATTCCCAGCTACTCAGAAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGCGGAGACTGGAAGGCCAATAGGAAAGGAGCCTGTAGCTGGAATTGGGTCTTCAACTTCTTGTCCCATTGCTACAGGTTCAGGAGTTTGAACATGTTAATGGGCGCTGGAGCATGCCTGAACTGGC
...................................................(((((((((.((((...(((.(((....)))..))).)))).))).))))))(((((((..((((((....)))))).......)))))))........................................................................................................................................................................................................................................................................................
..................................................51...............................................................................................148................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015362(GSM380327)
NaÌøve B Cell (Naive138). (B cell)		TAX577579(Rovira)
total RNA. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189784SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189782SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040009(GSM532894)
G727T. (cervix)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040007(GSM532892)
G601T. (cervix)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR040012(GSM532897)
G648N. (cervix)		SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
.................................................................................................................................................................................................................................................................................................CCGGGAGGCGGAGACCCC................................................................................................................... 186.000.00--------------------1.00------1.00-1.00-----------------1.00-----1.00---------1.00----------------------
.................................................................................................................................................................................................................................................................................................CCGGGAGGCGGAGACCC.................................................................................................................... 175.000.00---2.00-------------------------1.00-------------1.00-----------------1.00------------------------
....................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGAGTTTGAATCTG............................... 193.000.00------------2.00---------1.00---------------------------------------------------------------
........................................................................................................................................CGGGTGGATCACTTGAGGTCAAAA...................................................................................................................................................................................................................................................................... 242.000.00------------------------------2.00-------------------------------------------------------
.................................................................................................................................................................................................................................................................................................CCGGGAGGCGGAGACCCCC.................................................................................................................. 192.000.00----------------------------------------------------------1.00------------------------1.00--
.............................................................................................................................................................................................................................................GCACCTGTATTCCCATCGA...................................................................................................................................................................... 191.000.00-------1.00------------------------------------------------------------------------------
....................................................................................................................................................................................ACATGGCGAAACCCCAGTTT.............................................................................................................................................................................................................................. 201.000.00-------------------------------1.00------------------------------------------------------
......................................................................................CCAGGCGCAGTGGCTCACACCTGGCAA..................................................................................................................................................................................................................................................................................................................... 271.000.00--------------1.00-----------------------------------------------------------------------
.....................................................................................................................................................................................TTTTTAGTAGAGATGGGGTTTCGCCATG..................................................................................................................................................................................................................... 2801.001.00--------------------------------------------------------------------1.00-----------------
...........................................................................................CGCAGTGGCTCACACCTGTGGC..................................................................................................................................................................................................................................................................................................................... 221.000.00-1.00------------------------------------------------------------------------------------
..........................................GCAAGAAGGTGAGCCCTGAACAT..................................................................................................................................................................................................................................................................................................................................................................... 231.000.00------1.00-------------------------------------------------------------------------------
........................................................................................................................................CGGGTGGATCACTTGAGGTCAAGGT..................................................................................................................................................................................................................................................................... 251.000.00-----------------------------------------1.00--------------------------------------------
.................................................................................GGGGGCCAGGCGCAGTGGCTCACACCTGTCTGG.................................................................................................................................................................................................................................................................................................................... 331.000.001.00-------------------------------------------------------------------------------------
...........................................................................................................................................................................GCCTGGTCAACATGGCGAAACCCCATCGG.............................................................................................................................................................................................................................. 291.000.001.00-------------------------------------------------------------------------------------
.................................................................................................................................................................................TCAACATGGCGAAACCCAAC................................................................................................................................................................................................................................. 201.000.00----------------------------------------------------------------------------------1.00---
............................................................................................................................................................................................................................................................GCTACTCAGAAGGCTGAGGCAGGAGAATCGGA.......................................................................................................................................... 321.000.001.00-------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................CCGGGAGGCGGAGACTGGCC................................................................................................................. 201.000.00---------------------------------1.00----------------------------------------------------
..............................................................................................................................................................................................................................................TAGCTGGGAATACAGGTG...................................................................................................................................................................... 1801.001.00----------------------------------------------------------------1.00---------------------
............................................................................................................................................................................GAGATGGGGTTTCGCCATGTTGACCAGG.............................................................................................................................................................................................................................. 2801.001.00----------1.00---------------------------------------------------------------------------
.............................................................................................................................................................................................................................................GCACCTGTATTCCCATGCA...................................................................................................................................................................... 191.000.00------1.00-------------------------------------------------------------------------------
................................................................................................................................GGCTGAGGCGGGTGGATCACTTGAGCGCC......................................................................................................................................................................................................................................................................... 291.000.001.00-------------------------------------------------------------------------------------
..............................................................................................................................GAGGCTGAGGCGGGTGGTAC.................................................................................................................................................................................................................................................................................... 201.000.00----------------------------1.00---------------------------------------------------------
...................................................................................................................................................................................................................................................................AGAAGGCTGAGGCAGGAGAATTCAGC......................................................................................................................................... 261.000.001.00-------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................CGGGAGGCGGAGACTGGTC................................................................................................................. 191.000.00----------------------------------------------------------------------1.00---------------
............................................................................................................................................................................................................................................................GCTACTCAGAAGGCTGAGGCAGGAGAACGGC........................................................................................................................................... 311.000.001.00-------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................GGCAGGAGAATTGCTTGAAGGC................................................................................................................................... 221.000.001.00-------------------------------------------------------------------------------------
.........................................................................................................................................................................................GCGAAACCCCATCTCTACTAAAAATAACT................................................................................................................................................................................................................ 291.000.00-------------------------------------------------------------------------1.00------------
.............................................................................................................................................................................................................................................................CTACTCAGAAGGCTGAGGCAGGAGAATGGGG.......................................................................................................................................... 311.000.001.00-------------------------------------------------------------------------------------
.................................................................................GGGGGCCAGGCGCAGTGGCTCGTC............................................................................................................................................................................................................................................................................................................................. 241.000.001.00-------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................AAAATTAGCTGCACGTGGTGGGC.......................................................................................................................................................................................... 231.000.001.00-------------------------------------------------------------------------------------
.....................................................................................GCCAGGCGCAGTGGCTCACACCTGTGGCT.................................................................................................................................................................................................................................................................................................................... 291.000.001.00-------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................GCTACTCAGAAGGCTGAGGCAGGAGAATCAAG.......................................................................................................................................... 321.000.001.00-------------------------------------------------------------------------------------
.......................................................................................CAGGCGCAGTGGCTCACACCTGTAATCCCATTC.............................................................................................................................................................................................................................................................................................................. 331.000.001.00-------------------------------------------------------------------------------------
......................................................................................................................................................................GACTAGCCTGGTCAACATGAAAA......................................................................................................................................................................................................................................... 231.000.00------------------------1.00-------------------------------------------------------------
.............................................................................................................................GGAGGCTGAGGCGGGTGGATCACTTACC............................................................................................................................................................................................................................................................................. 281.000.00-1.00------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................GGTCTTCAACTTCTTGTATGG........................................................... 211.000.00------------------------------------------------1.00-------------------------------------
...............................................................................................................................................................................TTCGCCATGTTGACC........................................................................................................................................................................................................................................ 1501.001.00---------1.00----------------------------------------------------------------------------