ID: uc001qpn.2_intron_3_0_chr12_6687084_r
GENE: (35)
chr12:6687034-6687244-


(1)
AGO2.ip 		(6)
B-CELL 		(2)
BRAIN 		(11)
BREAST 		(23)
CELL-LINE 		(3)
CERVIX 		(7)
HEART 		(2)
HELA 		(5)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(28)
SKIN 		(1)
XRN.ip

Sense strand
GAGATCTGGCATCGACGGCATGACTACTGGCTGCTAGCCGGCATTATAAAGTATCCTTTGCCTGAATCTGTACTGAGGCTTTTGGTGAAAGGTTCTGAAGGTCTTTTAGTTTGAGGTTCTTACTTTCCTTGTTTTGTTTTTCCTGAGCACTTTTCCAATAGCCATGGCTATGCCCGGTGGCAAGACATCCAGAATGACCCACGCTATGCCA
......................................................................................(((((((.((..(((.....(((..(((((..........)))))..))).....))).)).)))))))........................................................
.....................................................................................86.........................................................................161................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR029125(GSM416754)
U2OS. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR191427(GSM715537)
153genomic small RNA (size selected RNA from . (breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM359202(GSM359202)
hepg2_untreated_a. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191457(GSM715567)
27genomic small RNA (size selected RNA from t. (breast)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR040039(GSM532924)
G531T. (cervix)		GSM359204(GSM359204)
HepG2_nucl_low. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040014(GSM532899)
G623N. (cervix)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR191623(GSM715733)
18genomic small RNA (size selected RNA from t. (breast)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		GSM532885(GSM532885)
G850N. (cervix)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..........................................................................................................................................TTTCCTGAGCACTTTTCCAATAGA.................................................241112.0031.0065.004.004.00--2.00-1.002.00----1.001.003.00-2.00---1.00-1.002.00----1.00-1.00-1.00--1.00-1.00-1.001.00--1.00-1.001.001.00-----1.001.00-----------1.00--1.00-----1.001.001.001.00--1.001.00---1.00-1.00-
..........................................................................................................................................TTTCCTGAGCACTTTTCCAATAGAA................................................25136.0031.0018.00---2.00-1.003.00---1.00--2.00---1.00--------1.00-----1.00---------1.00------------1.001.00----1.00--1.001.00------------------------
..........................................................................................................................................TTTCCTGAGCACTTTTCCAATAG..................................................23131.0031.009.002.00---2.001.00---3.00-2.00---1.00-1.00--1.00-----1.00-1.002.001.00-------1.00-----1.00---------------1.00-------------------1.00---------
.........................................................................................................................................TTTTCCTGAGCACTTTTCCAATAG..................................................2415.005.00-------------1.00------------------2.00-----------------------------------------1.00----------1.00-----
..........................................................................................................................................TTTCCTGAGCACTTTTCCAATAGT.................................................2415.0031.005.00------------------------------------------------------------------------------------------
..........................................................................................................................................TTTCCTGAGCACTTTTCCAAT....................................................2114.004.00---3.00--------------------------------------1.00------------------------------------------------
....TCTGGCATCGACGGCATG.............................................................................................................................................................................................1814.004.00---------3.00-------------------------------------------1.00-------------------------------------
.........................................................................................................................................TTTTCCTGAGCACTTTTCCAATAGA.................................................2513.005.001.00------------------------------------1.00-------------------------------1.00---------------------
......................................................................................................................................................................................AGACATCCAGAATGACCCACGT.......223.000.00----3.00--------------------------------------------------------------------------------------
....TCTGGCATCGACGGCATT.............................................................................................................................................................................................182.000.00-------------------2.00-----------------------------------------------------------------------
..............ACGGCATGACTACTGGCTGCTAG..............................................................................................................................................................................2312.002.00--------------------2.00----------------------------------------------------------------------
...........................................................................................................................................TTCCTGAGCACTTTTCCAATAG..................................................2211.001.00----------------------------------------------------------------1.00--------------------------
...............................................................................................................................................TGAGCACTTTTCCAATTGA.................................................191.000.00------------------------------------------------------------------------------------1.00------
..................................................................................................................................GTTTTGTTTTTCCTGAGCACTTTTCCAATAG..................................................3111.001.00-----------------------------------------------------------1.00-------------------------------
...........................................................................................................................................TTCCTGAGCACTTTTCCAAT....................................................2011.001.00---1.00---------------------------------------------------------------------------------------
.......................................................................................................................................................................................GACATCCAGAATGACCCACGCTATGCC.2711.001.00------1.00------------------------------------------------------------------------------------
...ATCTGGCATCGACGGCATG.............................................................................................................................................................................................1911.001.00-----------------------1.00-------------------------------------------------------------------
..............................................................................................................................................................................................AGAATGACCCACGCTATGCC.2011.001.00-----------1.00-------------------------------------------------------------------------------
...............................................................................................................................CTTGTTTTGTTTTTCCTCATG...............................................................211.000.00------------------------------------------------------------------------------------------1.00
.............GACGGCATGACTACTGGC....................................................................................................................................................................................1811.001.00----------------------------1.00--------------------------------------------------------------
......TGGCATCGACGGCATGAC...........................................................................................................................................................................................1811.001.00-----------------------------------------------------------------------1.00-------------------
...............................................................................................................................................................................................GAATGACCCACGCTATGCC.1911.001.00-----------------------------------1.00-------------------------------------------------------
....TCTGGCATCGACGGCATGA............................................................................................................................................................................................1911.001.00-----------1.00-------------------------------------------------------------------------------
..........ATCGACGGCATGACTACTGGC....................................................................................................................................................................................2111.001.00--------------------------1.00----------------------------------------------------------------
.......................................................................................................................................GTTTTTCCTGAGCACTTTTCCAATAGA.................................................271.000.00----------------1.00--------------------------------------------------------------------------
..........................................................................................................................................TTTCCTGAGCACTTTTCCAATAGAAA...............................................2611.0031.001.00------------------------------------------------------------------------------------------
...................................................................................................................................................................................GCAAGACATCCAGAATGACC............2011.001.00--------------------------------------------------------------------------------1.00----------
..........................................................................................................................................TTTCCTGAGCACTTTTCCAATAGTTTT..............................................2711.0031.00--------1.00----------------------------------------------------------------------------------
..........................................................................................................................................TTTCCTGAGCACTTTTCCAAGA...................................................221.000.001.00------------------------------------------------------------------------------------------
..........................................................................................GGTTCTGAAGGTCTTGG........................................................................................................171.000.00---------------------------------------------------1.00---------------------------------------
.....................................................................................................................................................................................AAGACATCCAGAATGACCC...........1911.001.00---------------------------------------------------------------1.00---------------------------
....................................................................................................................................................................TGGCTATGCCCGGTGGCA.............................1811.001.00----------------------------------------------------1.00--------------------------------------
..........................................................................................................................................TTTCCTGAGCACTTTTCCAATA...................................................2211.001.00---1.00---------------------------------------------------------------------------------------
.........CATCGACGGCATGACTACTGG.....................................................................................................................................................................................2111.001.00------------------------------------------------------------------------1.00------------------
..........................................................................................................................................TTTCCTGAGCACTTTTCCAATAGC.................................................2411.001.00-------------------------1.00-----------------------------------------------------------------
..........ATCGACGGCATGACTACTG......................................................................................................................................................................................1911.001.00----------------------------1.00--------------------------------------------------------------
..GATCTGGCATCGACGGCATGACTAC........................................................................................................................................................................................2511.001.00--------------------------------------------------------------------------------------1.00----
..........................CTGGCTGCTAGCCGGC.........................................................................................................................................................................1611.001.00----------------------------------------------------------------------------------------1.00--
.....................................................................................................................................................................................AAGACATCCAGAATGACCCACGCTACG...271.000.00--------------------------1.00----------------------------------------------------------------
..........................................................................................................................................TTTCCTGAGCACTTTTCCAATAGATA...............................................2611.0031.001.00------------------------------------------------------------------------------------------
..........................................................................................................................................TTTCCTGAGCACTTTTCCAATATA.................................................2411.001.00-------------------------1.00-----------------------------------------------------------------
...................................................................................................................................................................................GCAAGACATCCAGAATGACCCACG........2411.001.00---------------------------------------------------------------------------1.00---------------
.................................CTAGCCGGCATTATACTA................................................................................................................................................................181.000.00------------------------------------------------------------1.00------------------------------
......TGGCATCGACGGCATGACT..........................................................................................................................................................................................1911.001.00-------------------------------------------------------------------------1.00-----------------
........................................................................................................................................TTTTTCCTGAGCACTTTTCCAATAG..................................................2511.001.00--------------------------------------------------------------------1.00----------------------
......TGGCATCGACGGCATGACTACTGG.....................................................................................................................................................................................2411.001.00------1.00------------------------------------------------------------------------------------
....TCTGGCATCGACGGCATGACTACT.......................................................................................................................................................................................2411.001.00--------------------------------------------------1.00----------------------------------------
............................................................................................................................................TCCTGAGCACTTTTCCAATAGA.................................................221.000.00--1.00----------------------------------------------------------------------------------------
...........................TGGCTGCTAGCCGGC.........................................................................................................................................................................1520.500.50----------------------------------0.50--------------------------------------------------------

Antisense strand
GAGATCTGGCATCGACGGCATGACTACTGGCTGCTAGCCGGCATTATAAAGTATCCTTTGCCTGAATCTGTACTGAGGCTTTTGGTGAAAGGTTCTGAAGGTCTTTTAGTTTGAGGTTCTTACTTTCCTTGTTTTGTTTTTCCTGAGCACTTTTCCAATAGCCATGGCTATGCCCGGTGGCAAGACATCCAGAATGACCCACGCTATGCCA
......................................................................................(((((((.((..(((.....(((..(((((..........)))))..))).....))).)).)))))))........................................................
.....................................................................................86.........................................................................161................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR029125(GSM416754)
U2OS. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR191427(GSM715537)
153genomic small RNA (size selected RNA from . (breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM359202(GSM359202)
hepg2_untreated_a. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191457(GSM715567)
27genomic small RNA (size selected RNA from t. (breast)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR040039(GSM532924)
G531T. (cervix)		GSM359204(GSM359204)
HepG2_nucl_low. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040014(GSM532899)
G623N. (cervix)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR191623(GSM715733)
18genomic small RNA (size selected RNA from t. (breast)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		GSM532885(GSM532885)
G850N. (cervix)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...................................................................................................................GTTCTTACTTTCCTTTCTG............................................................................. 192.000.00----------------------2.00--------------------------------------------------------------------
.....CAGTAGTCATGCCGTCGATGCCAG...................................................................................................................................................................................... 2411.001.00----------------------------------1.00--------------------------------------------------------
..................CATGACTACTGGCTGCAGAG............................................................................................................................................................................. 201.000.00----------------------------------------------------------1.00--------------------------------
...................................................................................................................GTTCTTACTTTCCTTGTCTG............................................................................ 201.000.00-------------1.00-----------------------------------------------------------------------------