ID: uc001qnp.1_intron_1_0_chr12_6309732_f.3p
GENE: (2)
chr12:6334392-6334641+


(8)
B-CELL 		(6)
BREAST 		(11)
CELL-LINE 		(3)
CERVIX 		(3)
HEART 		(3)
LIVER 		(2)
OTHER 		(2)
RRP40.ip 		(16)
SKIN 		(1)
TESTES 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
TTATTCCTCGCTTGCTGGTATTTTTAGTACCTGCATGAATCAAACACACCCCGTAATGGCATCTACAACTACCAGGCGTATATGAGGGGCAGAGACCAAGGGTGGTCACAAAGTCCTTTGCAAGTCTCACCCTTAAGCGCGTGGGGACTGTGTTGTTGCTGGCAGCCAGAATTAATGCTGATGTCCTGTATGTCTTGCAGCTTGCCGGGATTGCTGTCCTTGCCATTGGACTATGGCTCCGATTCGACTC
..................................................................................((((((...(((((((((((((....))....))))))...))))).)))))).((((((((((((.((((((...((((...))))...))))))....))))).)))))...))....................................................
.............................................................................78........................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189784SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040034(GSM532919)
G001N. (cervix)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR040033(GSM532918)
G603T. (cervix)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR189786SRR191401(GSM715511)
38genomic small RNA (size selected RNA from t. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)
..................................................................................TGAGGGGCAGAGACCGAGA.....................................................................................................................................................1947.000.0015.00--2.002.002.001.002.00--2.002.00--1.001.00---1.001.00--1.00-1.00---1.00-1.00-1.001.00-1.00--1.001.00---1.00--1.00--1.001.00-1.00---1.00---
..................................................................................TGAGGGGCAGAGACCGAG......................................................................................................................................................1810.000.001.00--1.00--1.00--1.00----1.001.00----------------1.00-----1.00--1.00-------1.00-----------
............................................................................................................................................................................................................................TGCCATTGGACTATGGCTCCGATTCGAC..2813.003.00-------------2.00-----------------------------------------1.00-----
..........................................................................................................................................................................................................................CTTGCCATTGGACTATGGCTCC..........2212.002.00----------------------1.00---1.00----------------------------------
..................................................................................................................................................................................................................................TGGACTATGGCTCCGATTCGACT.2312.002.00------------1.00-----------------------------------------1.00------
..................................................................................TGAGGGGCAGAGACCGA.......................................................................................................................................................172.000.00------------------------------1.00-----------1.00------------------
..................................................................................TGAGGGGCAGAGACCAAACTT...................................................................................................................................................212.000.00-2.00-----------------------------------------------------------
..................................................................................................................................................................................................................................TGGACTATGGCTCCGATTCGACCT241.000.00---------------------------------------------1.00---------------
..................................................................................TGAGGGGCAGAGACCGGGA.....................................................................................................................................................191.000.001.00------------------------------------------------------------
..................................................................................................................................................................................................TTGCAGCTTGCCGGGATTGCCGTT................................241.000.00----------------------------1.00--------------------------------
..................................................................................TGAGGGGCAGAGACCATCCC....................................................................................................................................................201.000.00-1.00-----------------------------------------------------------
.......................................................................................................................................................................................................GCTTGCCGGGATTGCTG..................................1711.001.00----------------------------------------------1.00--------------
............................................................................................................................................................................TAATGCTGATGTCCTGTATG..........................................................2011.001.00-------------------------------------1.00-----------------------
..............................................................................................................................................................................................................GGGATTGCTGTCCTTGCCATTGGAC...................2511.001.00--------------------------------------------------------1.00----
..................................................................................TGAGGGGCAGAGACCGTG......................................................................................................................................................181.000.00----------------1.00--------------------------------------------
...................................................................................................................................................................................................................................GGACTATGGCTCCGATTCG....1911.001.00--------1.00----------------------------------------------------
..................................................................................................................................................................................................................................TGGACTATGGCTCCGATTCGACTC2411.001.00------------------------------------------------1.00------------
..................................................................................TGAGGGGCAGAGACCAAAATT...................................................................................................................................................211.000.00-----------------------------------1.00-------------------------
.........................................................................................................................................CGCGTGGGGACTGTGTT................................................................................................1711.001.00---------------------------1.00---------------------------------
................................................................................................................................................................................................................................ATTGGACTATGGCTCCGATTCGACTCTCCG301.000.00------------------------1.00------------------------------------
............................................................................................................................................................................................................................TGCCATTGGACTATGGCTCC..........2011.001.00-------------------------------------------1.00-----------------
.................................................................................................................................................................................................................................TTGGACTATGGCTCCGATTCGACT.2411.001.00----------------------------------------------------1.00--------
.......................................................ATGGCATCTACAACTACCAG...............................................................................................................................................................................2011.001.00---------------------1.00---------------------------------------
..................................................................................TGAGGGGCAGAGACCACCCA....................................................................................................................................................201.000.00-1.00-----------------------------------------------------------
..........................................................................................................................................................................................................................CTTGCCATTGGACTATGG..............1811.001.00--------1.00----------------------------------------------------
...............................................................................................................................................................................................................GGATTGCTGTCCTTGCCATT.......................2011.001.00------------1.00------------------------------------------------
......................................................................................................................................AAGCGCGTGGGGACTGGGG.................................................................................................191.000.00------------------1.00------------------------------------------
..................................................................................TGAGGGGCAGAGACCGAGC.....................................................................................................................................................191.000.00----------------1.00--------------------------------------------
..................................................................................TGAGGGGCAGAGACCACTT.....................................................................................................................................................191.000.00-1.00-----------------------------------------------------------
..................................................................................TGAGGGGCAGAGACCATTTC....................................................................................................................................................201.000.00-1.00-----------------------------------------------------------
............................................................................................................................................................................................................................TGCCATTGGACTATGG..............1620.500.50-----------------------------------------------------------0.50-
..............................................................................................................................................................................................TGTCTTGCAGCTTGC.............................................1580.120.12------------------------------------------------------------0.12

Antisense strand
TTATTCCTCGCTTGCTGGTATTTTTAGTACCTGCATGAATCAAACACACCCCGTAATGGCATCTACAACTACCAGGCGTATATGAGGGGCAGAGACCAAGGGTGGTCACAAAGTCCTTTGCAAGTCTCACCCTTAAGCGCGTGGGGACTGTGTTGTTGCTGGCAGCCAGAATTAATGCTGATGTCCTGTATGTCTTGCAGCTTGCCGGGATTGCTGTCCTTGCCATTGGACTATGGCTCCGATTCGACTC
..................................................................................((((((...(((((((((((((....))....))))))...))))).)))))).((((((((((((.((((((...((((...))))...))))))....))))).)))))...))....................................................
.............................................................................78........................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189784SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040034(GSM532919)
G001N. (cervix)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR040033(GSM532918)
G603T. (cervix)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR189786SRR191401(GSM715511)
38genomic small RNA (size selected RNA from t. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)
...................................................................................................................................................................................AGCTGCAAGACATACAGGACATC................................................ 2313.003.00--3.00----------------------------------------------------------
....TCCTCGCTTGCTGGTATAG................................................................................................................................................................................................................................... 191.000.00-1.00-----------------------------------------------------------
....................................................................................................................................................................................ATGTCCTGTATGTCTTGA.................................................... 181.000.00-----------------1.00-------------------------------------------
...................................................................................GAGGGGCAGAGACCAAGGCGT.................................................................................................................................................. 211.000.00---------1.00---------------------------------------------------
.............................................................................................................................................TGGGGACTGTGTTGTAT............................................................................................ 171.000.00----------------------------------------------------------1.00--
...................................................................................................................................................................................CAAGACATACAGGACATC..................................................... 1820.500.50-----------------0.50-------------------------------------------