ID: uc001qnh.2_intron_0_0_chr12_5019639_f
GENE: (1)
chr12:5019589-5020055+


(1)
AGO2.ip
(6)
BREAST
(4)
CELL-LINE
(19)
CERVIX
(1)
LIVER
(2)
OTHER
(4)
SKIN
(1)
UTERUS

Sense strand
CGGGCTCTCCGCTGACTCAGCACCGCCCCTGCGCCAAGCCAGCCGGCCAGGTAGGGGGTTCCCCAGCTCGGGGATGCAGAAGCGGGGGTTGGGGGGACCGGGTGGGGGAGGCCGGGGGTGCGGGGATGCTGTCCGGGACCCTGAGCTTCCCCCGGCGTCTCTCGGCGCTTTTCCGATCTCTAGTTTAACGAAGTTGTAAACAGATCGGCTGTTGGGCATTGGGGAAAGTGGGATGGAAGAGCCCCAAACTTGGATTTCCGGGTGTCTGCGTGTCGTCTGTCCGTGTGTGTGTGATAGCCCTAGCAAACGTCCAGTGCTTTCTCAAGCTAGAGGTCTGTGTTCTTCGGTGTCTGTAGGTCCGTCCCATCTGAATGCTTCTGATTTTCTACCCCCGTATCACTTTCTATTTCTCTGCAGCGTGCATCGATCGCCCTGGTGGGAGCTTAGAAGGCGGCAGGCGAAGAGGG
..............................................................................................................((((((((((((((((.(((...(((....)))))).)))))..))).)))))))).............................................................................................................................................................................................................................................................................................................
............................................................................................................109..........................................................................186.......................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR040035(GSM532920)
G001T. (cervix)
SRR040034(GSM532919)
G001N. (cervix)
SRR040040(GSM532925)
G612N. (cervix)
SRR040039(GSM532924)
G531T. (cervix)
SRR040037(GSM532922)
G243T. (cervix)
GSM532883(GSM532883)
G871N. (cervix)
GSM532887(GSM532887)
G761N. (cervix)
SRR040036(GSM532921)
G243N. (cervix)
GSM532873(GSM532873)
G699N. (cervix)
SRR040032(GSM532917)
G603N. (cervix)
SRR189787SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
GSM532876(GSM532876)
G547T. (cervix)
TAX577590(Rovira)
total RNA. (breast)
SRR189784SRR040041(GSM532926)
G612T. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
TAX577739(Rovira)
total RNA. (breast)
GSM532879(GSM532879)
G659N. (cervix)
GSM532886(GSM532886)
G850T. (cervix)
TAX577580(Rovira)
total RNA. (breast)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
TAX577746(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040029(GSM532914)
G026T. (cervix)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR040016(GSM532901)
G645N. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM532890(GSM532890)
G576T. (cervix)
GSM532884(GSM532884)
G871T. (cervix)
SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR191461(GSM715571)
35genomic small RNA (size selected RNA from t. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
....................................................................................................................................................................GCGCTTTTCCGATCTCCC.............................................................................................................................................................................................................................................................................................1830.000.00-18.0012.00-------------------------------------
....................................................................................................................................................................GCGCTTTTCCGATCTTTT.............................................................................................................................................................................................................................................................................................1828.000.0025.00--------------2.00----------------1.00-------
....................................................................................................................................................................GCGCTTTTCCGATCTGGG.............................................................................................................................................................................................................................................................................................1827.000.00---10.0010.00-------3.00---1.00--2.00----1.00---------------
.....................................................................................................................................................................CGCTTTTCCGATCTCCC.............................................................................................................................................................................................................................................................................................1711.000.00-----6.004.00-1.00-------------------------------
....................................................................................................................................................................GCGCTTTTCCGATCTAAA.............................................................................................................................................................................................................................................................................................187.000.00-------2.003.00---------2.00---------------------
.....................................................................................................................................................................CGCTTTTCCGATCTCCCC............................................................................................................................................................................................................................................................................................183.000.00---------3.00------------------------------
....................................................................................................................................................................GCGCTTTTCCGATCTCCCC............................................................................................................................................................................................................................................................................................192.000.00-1.001.00-------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGGTGGGAGCTTAGAAGGC...............2312.002.00-----------2.00----------------------------
.................................................................................................................GGGGGTGCGGGGATGCGG................................................................................................................................................................................................................................................................................................................................................181.000.00---1.00------------------------------------
....................................................................................................................................................................GCGCTTTTCCGATCTATG.............................................................................................................................................................................................................................................................................................181.000.00-------1.00--------------------------------
....................................................................................................................................................................GCGCTTTTCCGATCTTGG.............................................................................................................................................................................................................................................................................................181.000.00---1.00------------------------------------
..............................................................................................................................................................................GATCTCTAGTTTAACCCG...................................................................................................................................................................................................................................................................................181.000.00----------------------------1.00-----------
............TGACTCAGCACCGCCCCTCACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................221.000.00----------1.00-----------------------------
..................................................................................CGGGGGTTGGGGGGA..................................................................................................................................................................................................................................................................................................................................................................................1501.001.00-------------------------------------1.00--
...............................................................................................................................................................................................................................................................TTCCGGGTGTCTGCGCTC..................................................................................................................................................................................................181.000.00---------1.00------------------------------
....................................................................................................................................................................................................................................................................................................GATAGCCCTAGCAAAGAT.............................................................................................................................................................181.000.00----------1.00-----------------------------
............................................................................................................AGGCCGGGGGTGCGGGCT.....................................................................................................................................................................................................................................................................................................................................................181.000.00--------------------------1.00-------------
.......................................................................................................GGGGGAGGCCGGGGGTAG..........................................................................................................................................................................................................................................................................................................................................................181.000.00-----------------1.00----------------------
...........................................................................GCAGAAGCGGGGGTTTAT......................................................................................................................................................................................................................................................................................................................................................................................181.000.00------------------------------1.00---------
.......................................................................................................GGGGGAGGCCGGGGGTGTGGG.......................................................................................................................................................................................................................................................................................................................................................211.000.00----------------------1.00-----------------
....................................................................................................................................................................GCGCTTTTCCGATCTGTG.............................................................................................................................................................................................................................................................................................181.000.00----------------1.00-----------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGCATCGATCGCAG..................................181.000.00-----------------------------1.00----------
.......................................................................................................GGGGGAGGCCGGGGGTAGTG........................................................................................................................................................................................................................................................................................................................................................201.000.00-------------1.00--------------------------
.........................................................................................................................................................................................................................................TGGAAGAGCCCCAAACTTGGATTTCCGGGTG...........................................................................................................................................................................................................3111.001.00-------------1.00--------------------------
....................................................................................................................................................................GCGCTTTTCCGATCTAAAA............................................................................................................................................................................................................................................................................................191.000.00-------1.00--------------------------------
.....................................................................................................................................................................CGCTTTTCCGATCTCCCAC...........................................................................................................................................................................................................................................................................................191.000.00------1.00---------------------------------
...............................................................................AAGCGGGGGTTGGGGGAGT.................................................................................................................................................................................................................................................................................................................................................................................191.000.00---------------------------------1.00------
.....................................................................................................................................................................CGCTTTTCCGATCTCGG.............................................................................................................................................................................................................................................................................................171.000.00-------------------------------1.00--------
.....................................................................................................................................................................................................................................................................................................................................GCTAGAGGTCTGTGTTCTTCGGTGT.....................................................................................................................2511.001.00---------------------------1.00------------
..................................................................................................................................................................................................................GTTGGGCATTGGGGAAAGTG.............................................................................................................................................................................................................................................2011.001.00-----------------------1.00----------------
.........................................................................................................................GGGGATGCTGTCCGGGAA........................................................................................................................................................................................................................................................................................................................................181.000.00--------------------------------------1.00-
................................................................................................ACCGGGTGGGGGAGGC...................................................................................................................................................................................................................................................................................................................................................................1611.001.00---------------------------------------1.00
............TGACTCAGCACCGCCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................1760.170.17----------0.17-----------------------------

Antisense strand
CGGGCTCTCCGCTGACTCAGCACCGCCCCTGCGCCAAGCCAGCCGGCCAGGTAGGGGGTTCCCCAGCTCGGGGATGCAGAAGCGGGGGTTGGGGGGACCGGGTGGGGGAGGCCGGGGGTGCGGGGATGCTGTCCGGGACCCTGAGCTTCCCCCGGCGTCTCTCGGCGCTTTTCCGATCTCTAGTTTAACGAAGTTGTAAACAGATCGGCTGTTGGGCATTGGGGAAAGTGGGATGGAAGAGCCCCAAACTTGGATTTCCGGGTGTCTGCGTGTCGTCTGTCCGTGTGTGTGTGATAGCCCTAGCAAACGTCCAGTGCTTTCTCAAGCTAGAGGTCTGTGTTCTTCGGTGTCTGTAGGTCCGTCCCATCTGAATGCTTCTGATTTTCTACCCCCGTATCACTTTCTATTTCTCTGCAGCGTGCATCGATCGCCCTGGTGGGAGCTTAGAAGGCGGCAGGCGAAGAGGG
..............................................................................................................((((((((((((((((.(((...(((....)))))).)))))..))).)))))))).............................................................................................................................................................................................................................................................................................................
............................................................................................................109..........................................................................186.......................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR040035(GSM532920)
G001T. (cervix)
SRR040034(GSM532919)
G001N. (cervix)
SRR040040(GSM532925)
G612N. (cervix)
SRR040039(GSM532924)
G531T. (cervix)
SRR040037(GSM532922)
G243T. (cervix)
GSM532883(GSM532883)
G871N. (cervix)
GSM532887(GSM532887)
G761N. (cervix)
SRR040036(GSM532921)
G243N. (cervix)
GSM532873(GSM532873)
G699N. (cervix)
SRR040032(GSM532917)
G603N. (cervix)
SRR189787SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
GSM532876(GSM532876)
G547T. (cervix)
TAX577590(Rovira)
total RNA. (breast)
SRR189784SRR040041(GSM532926)
G612T. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
TAX577739(Rovira)
total RNA. (breast)
GSM532879(GSM532879)
G659N. (cervix)
GSM532886(GSM532886)
G850T. (cervix)
TAX577580(Rovira)
total RNA. (breast)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
TAX577746(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040029(GSM532914)
G026T. (cervix)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR040016(GSM532901)
G645N. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM532890(GSM532890)
G576T. (cervix)
GSM532884(GSM532884)
G871T. (cervix)
SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR191461(GSM715571)
35genomic small RNA (size selected RNA from t. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
.............................................................................................................................................................................................GAAGTTGTAAACAGATTTG................................................................................................................................................................................................................................................................... 191.000.00--------------1.00-------------------------
.......................................................................................................................................................................................................................................................................GTCTGCGTGTCGTCTTCGA......................................................................................................................................................................................... 191.000.00-------------------------1.00--------------
...................................................................................................GGGTGGGGGAGGCCGGGGCGCT.......................................................................................................................................................................................................................................................................................................................................................... 221.000.00-----------------------------------1.00----
............................................................................................................................................................................................................................................................................ACACACGGACAGACGACACG................................................................................................................................................................................... 2011.001.00--------------------1.00-------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCGGCAGGCGAGGCC.. 191.000.00-----------------1.00----------------------
.............................................................................................................................................................TCTCTCGGCGCTTTTGGA.................................................................................................................................................................................................................................................................................................... 181.000.00----------1.00-----------------------------
..................................................................................................................................................................................................................................................................................GTCTGTCCGTGTGTGTGT............................................................................................................................................................................... 181.000.00-----------1.00----------------------------
................................................................................................................................................................................................................................................................................................................................................ACAGACACCGAAGAACAC................................................................................................................. 1811.001.00-------------1.00--------------------------
..........................................................................................................................................................................................................................................................................CACGGACAGACGACACGCA...................................................................................................................................................................................... 1911.001.00------------------------------------1.00---
.....................................................................................................GTGGGGGAGGCCGGGGACAG.......................................................................................................................................................................................................................................................................................................................................................... 201.000.00---------------------1.00------------------
.......................................................................................................GGGGGAGGCCGGGGGTGC.......................................................................................................................................................................................................................................................................................................................................................... 181.000.00----------------------------------1.00-----
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCGGCAGGCGAGGTC.. 191.000.00--------------1.00-------------------------