ID: uc001qis.1_intron_1_0_chr12_1023288_r
GENE: RAD52(10)
chr12:1023238-1023646-


(1)
AGO2.ip 		(2)
B-CELL 		(3)
BRAIN 		(10)
BREAST 		(11)
CELL-LINE 		(10)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(5)
HELA 		(1)
LIVER 		(1)
OTHER 		(7)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
ACCACTCCTGGAGAAAGACTTCCTTGCAGGAGTGACTCAAGAATTAATCAGTAAATACCTTGAAATGCTTGTAAGCTACTGTGCTGTATGTTTCTAGTAGCCACAGAATACCTTTTAGGCGACATAAAAATCCTCATTTTCGTGTGGTTTTGTTGAGGGGGTTCTGGCTGATAGCATATGTCCAGTTCCTCTTTGGTCCTAACCAAAGGGAAGTGTACTTTTAGGGGGAGGGGAGAGAAATTCCAAAAACTTTCAGAAGGTACTGAAGACATGGAATTTCTGAGGGCCAGTTTTTCCAGTGCTTTCTGTGAGAATACTTCATTATTTGCTGATGACGCACTTTTCCTTGACCTCTGTAGAGACTCTTGAAGACAACTCTGAAAAGTGGGCTGTGACTCCCGATGCAGGG
.........................................................................................................................................................................................................................................................................................((((...(((((((((((......))).))))).)))((((((.....))))))...............)))).......................................................
.......................................................................................................................................................................................................................................................................................280............................................................................359................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		TAX577744(Rovira)
total RNA. (breast)		SRR040029(GSM532914)
G026T. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR040031(GSM532916)
G013T. (cervix)		SRR040039(GSM532924)
G531T. (cervix)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029124(GSM416753)
HeLa. (hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040025(GSM532910)
G613T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR343334SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR189787SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		TAX577739(Rovira)
total RNA. (breast)		GSM532890(GSM532890)
G576T. (cervix)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR038861(GSM458544)
MM466. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR040012(GSM532897)
G648N. (cervix)		SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532886(GSM532886)
G850T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
............................................................................................................................................................................................................................................................................................GGCCAGTTTTTCCAGGAAT..........................................................................................................1920.000.00-6.001.002.00--2.001.001.00----1.00-1.00-----------1.00-----1.001.001.00------------1.00--------
...............................................................................................................................................................................................................................................................................................CAGTTTTTCCAGTGCTTTCTGTGAGAATACTTCATTATTTGCTGATGACGCACTTTTCCTTGACCTCTGTAG..................................................72113.0013.0013.00--------------------------------------------------------
..............................................................................................................................................................................................................................................................................................CCAGTTTTTCCAGTGCTTTCTGTGAGAATACTTCATTATTTGCTGATGACGCACTTTTCCTTGACCTCTGTAG..................................................7318.008.008.00--------------------------------------------------------
............................................................................................................................................................................................................................................................................................GGCCAGTTTTTCCAGGTAT..........................................................................................................194.000.00------2.00-1.00------------------------------------1.00-----------
........................TGCAGGAGTGACTCAAGAATTA...........................................................................................................................................................................................................................................................................................................................................................................2212.002.00--------------------------------------1.00-----1.00------------
............................................................................................................................................................................................................................................................................................GGCCAGTTTTTCCAGGCAT..........................................................................................................192.000.00--1.00-----------------------------------------------1.00------
............................................................................................................................................................................................................................................................................................GGCCAGTTTTTCCAGGCTT..........................................................................................................192.000.00--1.00----1.00-------------------------------------------------
............................................................................................................................................................................................................................................................................................GGCCAGTTTTTCCAGGATT..........................................................................................................192.000.00-1.00--------------------------1.00----------------------------
............................................................................................................................................................................................................................................................................................GGCCAGTTTTTCCAGGCCT..........................................................................................................192.000.00---1.00----1.00------------------------------------------------
............................................................................................................................................................................................................................................................................................GGCCAGTTTTTCCAGGAAA..........................................................................................................192.000.00-1.00--------------------1.00----------------------------------
.....................CCTTGCAGGAGTGACTCAAGAA..............................................................................................................................................................................................................................................................................................................................................................................2212.002.00-----------------2.00---------------------------------------
............................................................................................................................................................................................................................................................................................GGCCAGTTTTTCCAGGACT..........................................................................................................192.000.00---1.00---1.00-------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................AGACTCTTGAAGACAACTCTGAAAAG........................2612.002.00------------2.00--------------------------------------------
.....................................................................................................................................................TTGTTGAGGGGGTTCTGGCTGACAGC..........................................................................................................................................................................................................................................262.000.00----------------1.00-------------------1.00--------------------
............................................................................................................................................................................................................................................................................................GGCCAGTTTTTCCAGTACTC.........................................................................................................202.000.00--1.001.00-----------------------------------------------------
.......................TTGCAGGAGTGACTCAAGAATTA...........................................................................................................................................................................................................................................................................................................................................................................2312.002.00-----------------------------------------------1.00---1.00-----
.....................................................................................................................................................................................................................................................................................................................................................TTTCCTTGACCTCTGTAGA.................................................1912.002.00-----------2.00---------------------------------------------
.................................................................................................................................................................................................................................................................................................GTTTTTCCAGTGCTTTCTGTGAGAATACTTCATTATTTGCTGATGACGCACTTTTCCTTGACCTCTGTAG..................................................7012.002.00---------2.00-----------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................CACTTTTCCTTGACCTCTGTAG..................................................2211.001.00--------------------------------1.00------------------------
............................................................................................................................................................................................................................................................................................GGCCAGTTTTTCCAGGGAT..........................................................................................................191.000.00--1.00------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................TATTTGCTGATGACGCACTTTTCCTTG............................................................2711.001.00-------------------------------1.00-------------------------
........................................................................................................................................................................................................................................................................GAAGACATGGAATTTTTGA..............................................................................................................................191.000.00-------------------------------------------------1.00-------
..................................................................................................................................................................................................................................................................................AATTTCTGAGGGCCAATC.....................................................................................................................181.000.00-----------------------------1.00---------------------------
.......................TTGCAGGAGTGACTCAAGAATT............................................................................................................................................................................................................................................................................................................................................................................2211.001.00----1.00----------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................TTTGCTGATGACGCACTTTTCCTTGACC.........................................................2811.001.00-------------------------------------------1.00-------------
............................................................................................................................................................................................................................................................................................GGCCAGTTTTTCCAGTCAT..........................................................................................................191.000.00--1.00------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................GAGACTCTTGAAGACAACTCTGAA...........................2411.001.00----1.00----------------------------------------------------
.......................................................................................................................................................................................................................................................................TGAAGACATGGAATTTCTGAGGGCCAGTTTT...................................................................................................................3111.001.00--------------1.00------------------------------------------
............................................................................................................................................................................................................................................................................................GGCCAGTTTTTCCAGTATTC.........................................................................................................201.000.00-1.00-------------------------------------------------------
............................................................................................................................................................................................................................................................................................GGCCAGTTTTTCCAGGTAG..........................................................................................................191.000.00-------------------------------------1.00-------------------
............................................................................................................................................................................................................................................................................................GGCCAGTTTTTCCAGTACT..........................................................................................................191.000.00---1.00-----------------------------------------------------
...............................................................................................................................................................................................................................................................................................CAGTTTTTCCAGTGCTTTCTGTGAGAATACTTCATTATTTGCTGATGACGCACTTTTCCTTGACCTCTGTGG..................................................721.000.001.00--------------------------------------------------------
................................................................................................................................................TGGTTTTGTTGAGGGGGTTCTGGC.................................................................................................................................................................................................................................................2411.001.00----------------1.00----------------------------------------
..........................................................................................................................................................................................................................TTTTAGGGGGAGGGGATGC............................................................................................................................................................................191.000.00-----------------------------------------------------1.00---
..............................................................................................................................................................................................................................................................................................................................................ACGCACTTTTCCTTGACCTCTGTAG..................................................2511.001.00------------------------------------------------------1.00--
......................................................................................................................................................................................................................................................................................................................................................................GAGACTCTTGAAGACTGAA................................191.000.00-------------------1.00-------------------------------------
.......................TTGCAGGAGTGACTCAAGAATTAATC........................................................................................................................................................................................................................................................................................................................................................................2611.001.00----1.00----------------------------------------------------
........................TGCAGGAGTGACTCAAGTATT............................................................................................................................................................................................................................................................................................................................................................................211.000.00----1.00----------------------------------------------------
...........................................................................................................................................................................................................................................................TTCAGAAGGTACTGAGTAG...........................................................................................................................................191.000.00-------------------------1.00-------------------------------
...............................................................................................................................................................GGTTCTGGCTGATAGCATAT......................................................................................................................................................................................................................................2011.001.00--------------1.00------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................TGAAGACAACTCTGAAAAGTGGGCTGTGACTC...........3211.001.00---------------------------------------1.00-----------------
............................................................................................................................................................................................................................................................................................GGCCAGTTTTTCCAGTACC..........................................................................................................191.000.00---------------1.00-----------------------------------------
............................................................................................................................................................................................................................................................................................GGCCAGTTTTTCCAGGGA...........................................................................................................181.000.00-------------1.00-------------------------------------------
.....................CCTTGCAGGAGTGACTCA..................................................................................................................................................................................................................................................................................................................................................................................1811.001.00----------------------------------------1.00----------------
.........................................................................................................................................................................................................................................................................................................................................TGATGACGCACTTTTATG..............................................................181.000.00-----------------------1.00---------------------------------
........................................................................................................................................TTTTCGTGTGGTTTTGTTGAGGGGG........................................................................................................................................................................................................................................................2511.001.00-----------------------------------------1.00---------------
................................................................................................................................................................................................................................GGGGAGGGGAGAGAAATTT......................................................................................................................................................................191.000.00---------------------1.00-----------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................ACTCTTGAAGACAACTCTG.............................1911.001.00--------------------------1.00------------------------------
............................................................................................................................................................................................................................................................................................GGCCAGTTTTTCCAGTAAT..........................................................................................................191.000.00--1.00------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................TCCTTGACCTCTGTAG..................................................1660.170.17--------------------------------------------------------0.17

Antisense strand
ACCACTCCTGGAGAAAGACTTCCTTGCAGGAGTGACTCAAGAATTAATCAGTAAATACCTTGAAATGCTTGTAAGCTACTGTGCTGTATGTTTCTAGTAGCCACAGAATACCTTTTAGGCGACATAAAAATCCTCATTTTCGTGTGGTTTTGTTGAGGGGGTTCTGGCTGATAGCATATGTCCAGTTCCTCTTTGGTCCTAACCAAAGGGAAGTGTACTTTTAGGGGGAGGGGAGAGAAATTCCAAAAACTTTCAGAAGGTACTGAAGACATGGAATTTCTGAGGGCCAGTTTTTCCAGTGCTTTCTGTGAGAATACTTCATTATTTGCTGATGACGCACTTTTCCTTGACCTCTGTAGAGACTCTTGAAGACAACTCTGAAAAGTGGGCTGTGACTCCCGATGCAGGG
.........................................................................................................................................................................................................................................................................................((((...(((((((((((......))).))))).)))((((((.....))))))...............)))).......................................................
.......................................................................................................................................................................................................................................................................................280............................................................................359................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		TAX577744(Rovira)
total RNA. (breast)		SRR040029(GSM532914)
G026T. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR040031(GSM532916)
G013T. (cervix)		SRR040039(GSM532924)
G531T. (cervix)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029124(GSM416753)
HeLa. (hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040025(GSM532910)
G613T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR343334SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR189787SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		TAX577739(Rovira)
total RNA. (breast)		GSM532890(GSM532890)
G576T. (cervix)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR038861(GSM458544)
MM466. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR040012(GSM532897)
G648N. (cervix)		SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532886(GSM532886)
G850T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
..........................................................................................................................................................................................TCCTCTTTGGTCCTATC.............................................................................................................................................................................................................. 174.000.00-----4.00---------------------------------------------------
.................................................................................................................................................................................TTTGGTTAGGACCAAAGAGGAACTGGACAT.......................................................................................................................................................................................................... 3012.002.00----------2.00----------------------------------------------
...................................................................................TTCTGTGGCTACTAGAAACATACAG............................................................................................................................................................................................................................................................................................................. 2511.001.00------------------------1.00--------------------------------
.......................................................................................................................................ATTTTCGTGTGGTTTATAG............................................................................................................................................................................................................................................................... 191.000.00--------------------1.00------------------------------------
........................................................................................................................................................TGCTATCAGCCAGAACCCCCTCAA......................................................................................................................................................................................................................................... 2411.001.00----------------------------------------------------1.00----
...................................................................................................................................................................................................................................................................................................................................................................GTAGAGACTCTTGAATAAG................................... 191.000.00------------------1.00--------------------------------------
..............................................................................................................................................................................................................................................................................................AAGCACTGGAAAAACTGG......................................................................................................... 1811.001.00------------------------------1.00--------------------------
............................................................................................................................................................GACATATGCTATCAGCCAGAACCCCC................................................................................................................................................................................................................................... 2611.001.00------------------------------------------1.00--------------
...............................................................................................................................................................................................................................GGGGGAGGGGAGAGAAACAGT..................................................................................................................................................................... 211.000.00----------------------------------------------1.00----------
..AGTCTTTCTCCAGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................... 1820.500.50-------------------------------------------------------0.50-