ID: uc001qip.3_intron_9_0_chr12_987528_f.5p
GENE: (10)
chr12:987478-987727+


(1)
B-CELL
(11)
CELL-LINE
(3)
CERVIX
(1)
FIBROBLAST
(3)
HEART
(2)
HELA
(1)
LIVER
(1)
OTHER
(8)
SKIN
(1)
XRN.ip

Sense strand
GTCAGCCTCAAGCTCCACAAGTCTTGCCTCAAGTATCAGCTGGAAAACAGGTAAACTTTTTTTTTTTTTTTAAACAGGTAAACTCTTAATTTCTGAAAGGGTGCTAAAAGGGATTTCCATGTAACTTGTCCTTTCATGTGGATAGACTTCTACCTTTTCTTCTAAGGGTAACCAACCCTTGAAGTAGGTTAATCTCATTGCAGAAATGAAGTGAAGATCACCTCATTGGTGCATATGCATTATTTAATGT
............................................................................((.((((((((....(((....)))......))))).)))))....................................................................................................................................
..................................................51..................................................................119.................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040034(GSM532919)
G001N. (cervix)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189784SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR040036(GSM532921)
G243N. (cervix)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040025(GSM532910)
G613T. (cervix)
SRR029127(GSM416756)
A549. (cell line)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR343335SRR553574(SRX182780)
source: Heart. (Heart)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
......................................................ACTTTTTTTTTTTTTTTAAACCAG............................................................................................................................................................................247.000.002.004.00-1.00-----------------------------
................................GTATCAGCTGGAAAACAG........................................................................................................................................................................................................1816.006.00--5.00-----------1.00------------------
......................................................ACTTTTTTTTTTTTTTTAAACAAG............................................................................................................................................................................245.000.003.002.00-------------------------------
....................................................AAACTTTTTTTTTTTTTTTAACAG..............................................................................................................................................................................245.000.004.001.00-------------------------------
...............................AGTATCAGCTGGAAAACAGGT......................................................................................................................................................................................................2113.003.00--3.00------------------------------
............CTCCACAAGTCTTGCCTCAAG.........................................................................................................................................................................................................................2113.003.00--------2.00-------------------1.00----
....................................................AAACTTTTTTTTTTTTTTTATAG...............................................................................................................................................................................233.000.00-3.00-------------------------------
......................................................ACTTTTTTTTTTTTTTTAAACTAT............................................................................................................................................................................242.000.00-2.00-------------------------------
......................................................ACTTTTTTTTTTTTTTTAAAAGG.............................................................................................................................................................................232.000.00-1.00-1.00-----------------------------
.................................TATCAGCTGGAAAACAG........................................................................................................................................................................................................1712.002.00-------------------------1.001.00------
.................................................................................ACTCTTAATTTCTGAAAGGGTGCTAAAAGG...........................................................................................................................................3012.002.00-------2.00-------------------------
....................................................AAACTTTTTTTTTTTTTTTACCG...............................................................................................................................................................................232.000.001.00--1.00-----------------------------
......................................................ACTTTTTTTTTTTTTTTAAAAGGG............................................................................................................................................................................241.000.00-----1.00---------------------------
....................................................AAACTTTTTTTTTTTTTTTAAAGGC.............................................................................................................................................................................251.000.00----1.00----------------------------
......................................................ACTTTTTTTTTTTTTTTAAACAAAG...........................................................................................................................................................................251.000.00---1.00-----------------------------
......................................................ACTTTTTTTTTTTTTTTAAAATTA............................................................................................................................................................................241.000.00------1.00--------------------------
....................................................AAACTTTTTTTTTTTTTTTAAACTCG............................................................................................................................................................................261.000.00------1.00--------------------------
....................................................AAACTTTTTTTTTTTTTTTACGG...............................................................................................................................................................................231.000.001.00--------------------------------
......................................................ACTTTTTTTTTTTTTTTAAAAATG............................................................................................................................................................................241.000.001.00--------------------------------
....................................................AAACTTTTTTTTTTTTTTTACGGT..............................................................................................................................................................................241.000.00----1.00----------------------------
......................CTTGCCTCAAGTATCAGCTGGA..............................................................................................................................................................................................................2211.001.00---------------------------1.00-----
.......................................CTGGAAAACAGGTAAACTTTTT.............................................................................................................................................................................................2211.001.00---------------------1.00-----------
..............................AAGTATCAGCTGGAAAACAG........................................................................................................................................................................................................2011.001.00----------------1.00----------------
................................................AGGTAAACTTTTTTTTTCC.......................................................................................................................................................................................191.000.00------------------------1.00--------
............................TCAAGTATCAGCTGGA..............................................................................................................................................................................................................1611.001.00-----------------------------1.00---
......................................................ACTTTTTTTTTTTTTTTAAACTGT............................................................................................................................................................................241.000.001.00--------------------------------
.............................CAAGTATCAGCTGGAAAAC..........................................................................................................................................................................................................1911.001.00-----------------1.00---------------
.......................................................................AAACAGGTAAACTCTTAATTTCTGAAAGGGTG...................................................................................................................................................3211.001.00-----------1.00---------------------
...............................................................TTTTTTTTAAACAGGTAAACT......................................................................................................................................................................2111.001.00---------1.00-----------------------
......................................................ACTTTTTTTTTTTTTTTAAACAGCCCC.........................................................................................................................................................................271.000.00-----1.00---------------------------
......................................................ACTTTTTTTTTTTTTTTAAAATGG............................................................................................................................................................................241.000.00---1.00-----------------------------
..........................CCTCAAGTATCAGCTGGAAAA...........................................................................................................................................................................................................2111.001.00----------1.00----------------------
..........................CCTCAAGTATCAGCTGGAAAACAGG.......................................................................................................................................................................................................2511.001.00------------------1.00--------------
...................................................TAAACTTTTTTTTTTTTTTTAAGAAG.............................................................................................................................................................................261.000.001.00--------------------------------
.......................TTGCCTCAAGTATCAGCTGGAAAACCG........................................................................................................................................................................................................271.000.00-------------1.00-------------------
.......................................................................................................................................................................................................GCAGAAATGAAGTGAAGA.................................1811.001.00-----------------------1.00---------
...........................................AAAACAGGTAAACTTTAG.............................................................................................................................................................................................181.000.00---------------1.00-----------------
..............................................................................................GAAAGGGTGCTAAAAGGGATTTCCA...................................................................................................................................2511.001.00---------1.00-----------------------
......................................................ACTTTTTTTTTTTTTTTAAACCCG............................................................................................................................................................................241.000.00-1.00-------------------------------
......................................................ACTTTTTTTTTTTTTTTAAACCATG...........................................................................................................................................................................251.000.00---1.00-----------------------------
...............................................................................................AAAGGGTGCTAAAAGGGATCTCC....................................................................................................................................231.000.00-----1.00---------------------------
........................................................TTTTTTTTTTTTTTTAAACAGGGGGC........................................................................................................................................................................261.000.001.00--------------------------------
....................................................AAACTTTTTTTTTTTTTTTAAACCG.............................................................................................................................................................................251.000.00------1.00--------------------------
......................................................ACTTTTTTTTTTTTTTTAAAAGCC............................................................................................................................................................................241.000.00----1.00----------------------------
.....................................................AACTTTTTTTTTTTTTTTAAACTCAG...........................................................................................................................................................................261.000.001.00--------------------------------
....................................................AAACTTTTTTTTTTTTTTTAATTTA.............................................................................................................................................................................251.000.001.00--------------------------------
....................................................AAACTTTTTTTTTTTTTTTAACG...............................................................................................................................................................................231.000.001.00--------------------------------
......................................................ACTTTTTTTTTTTTTTTAAACCGG............................................................................................................................................................................241.000.00-1.00-------------------------------
......................................................ACTTTTTTTTTTTTTTTAAAACCG............................................................................................................................................................................241.000.00-1.00-------------------------------
...................AGTCTTGCCTCAAGTATCAGCT.................................................................................................................................................................................................................2211.001.00-------------------1.00-------------
....................................................AAACTTTTTTTTTTTTTTTACTTC..............................................................................................................................................................................241.000.00----1.00----------------------------
............................TCAAGTATCAGCTGGAAAACAG........................................................................................................................................................................................................2211.001.00----------------------1.00----------
...................................................TAAACTTTTTTTTTTTTTTTATAAG..............................................................................................................................................................................251.000.00-1.00-------------------------------
................................GTATCAGCTGGAAAAC..........................................................................................................................................................................................................1620.500.50-------------------------------0.50-
......................................................ACTTTTTTTTTTTTTTTAAACAGG............................................................................................................................................................................2490.220.220.110.11-------------------------------
............................TCAAGTATCAGCTGG...............................................................................................................................................................................................................1550.200.20----------0.20----------------------
......................................................ACTTTTTTTTTTTTTTTAAACAGGGG..........................................................................................................................................................................2690.110.22-----------0.11---------------------

Antisense strand
GTCAGCCTCAAGCTCCACAAGTCTTGCCTCAAGTATCAGCTGGAAAACAGGTAAACTTTTTTTTTTTTTTTAAACAGGTAAACTCTTAATTTCTGAAAGGGTGCTAAAAGGGATTTCCATGTAACTTGTCCTTTCATGTGGATAGACTTCTACCTTTTCTTCTAAGGGTAACCAACCCTTGAAGTAGGTTAATCTCATTGCAGAAATGAAGTGAAGATCACCTCATTGGTGCATATGCATTATTTAATGT
............................................................................((.((((((((....(((....)))......))))).)))))....................................................................................................................................
..................................................51..................................................................119.................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040034(GSM532919)
G001N. (cervix)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189784SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR040036(GSM532921)
G243N. (cervix)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040025(GSM532910)
G613T. (cervix)
SRR029127(GSM416756)
A549. (cell line)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR343335SRR553574(SRX182780)
source: Heart. (Heart)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
.TCAGCCTCAAGCTCCGGA....................................................................................................................................................................................................................................... 181.000.00--------------------1.00------------
...........................................AAAACAGGTAAACTTACTC............................................................................................................................................................................................ 191.000.00------------1.00--------------------
.............GGCAAGACTTGTGGA.............................................................................................................................................................................................................................. 1550.800.80------------------------------0.80--
......................................................CCTGTTTAAAAAAAAAAAAAAAGT............................................................................................................................................................................ 2490.110.11--------------------------------0.11