ID: uc001qhe.2_intron_1_0_chr11_134104948_f.3p
GENE: (2)
chr11:134109685-134109934+


(2)
AGO1.ip 		(2)
AGO2.ip 		(1)
AGO3.ip 		(6)
B-CELL 		(3)
BRAIN 		(6)
BREAST 		(25)
CELL-LINE 		(3)
CERVIX 		(4)
HEART 		(3)
HELA 		(14)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(11)
SKIN 		(1)
TESTES 		(4)
UTERUS 		(1)
XRN.ip

Sense strand
GTGGTTGAAAAGGTCTCTGTATAGGTACATATGTGCATCTTTCCCTGGAAGAGGGTCTGTAACTTCTTAAAAGGATACAAAGCCCTCAAGGGTTAAGAACCTTTGTACAGGCTTCTCTCAAGTGGGCCAATTTGGTACCTATATCTAGGTAGCATCTGGAGACTGGGAGTGTTTATTCATGACAGTTCCGTCTCCTACAGCTATTTCCTTCGTGCTACCATCAGCCGCCGCCTCAATGATGTTGTCAAAG
..........................................................................................(((.....))).......((((..(((((.(((...(((...((.((((((....)))))).))..)))..)))))))).))))............................................................................
..........................................................................................91........................................................................................181...................................................................
SizePerfect hitTotal NormPerfect NormGSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189785SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040014(GSM532899)
G623N. (cervix)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038853(GSM458536)
MELB. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR040040(GSM532925)
G612N. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR038855(GSM458538)
D10. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR038860(GSM458543)
MM426. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577453(Rovira)
total RNA. (breast)		SRR038862(GSM458545)
MM472. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR040008(GSM532893)
G727N. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..........................................................................................................................................................TCTGGAGACTGGGAGTGTTTATT.........................................................................23143.0043.0010.00--1.00-1.00-2.00-2.003.00-2.00---1.00---1.00-1.002.00--1.002.00-2.001.00-------1.001.00-1.00--------1.001.001.00-----1.001.00-------1.00----------1.001.00-----
..........................................................................................................................................................TCTGGAGACTGGGAGTGTTTAT..........................................................................22134.0034.005.00--2.002.001.00-1.002.00--2.00--1.001.001.00---1.00---2.00------1.00-1.00--------------1.00-----1.00-1.001.00--1.00--1.001.001.00------1.00---1.001.00-------
..........................................................................................................................................................TCTGGAGACTGGGAGTGTTT............................................................................20117.0017.00-7.002.001.00----2.001.00--------------------1.00--1.00--------1.00----1.00-------------------------------------
..........................................................................................................................................................TCTGGAGACTGGGAGTGTTTATTC........................................................................24114.0014.003.00---1.00--1.00-----1.00--------------2.00--1.002.00-------1.00----------------------------1.00---1.00-----------
..........................................................................................................................................................TCTGGAGACTGGGAGTGTT.............................................................................19111.0011.00-4.002.00----1.00-1.00-------2.00-------------------------1.00-----------------------------------------
..........................................................................................................................................................TCTGGAGACTGGGAGTGTTTA...........................................................................2118.008.002.00-3.00--------1.00----------------------1.00--1.00-----------------------------------------------
..........................................................................................................................................................TCTGGAGACTGGGAGTGTTTATTCA.......................................................................2514.004.00--------------2.00-------1.00----------------------1.00---------------------------------------
..........................................................................................................................................................TCTGGAGACTGGGAGTGTTTATTT........................................................................2414.0043.00----3.00--------1.00-----------------------------------------------------------------------
......................................................................................................................CAAGTGGGCCAATTT.....................................................................................................................1523.003.00------1.50--------------------------------------------------------------------------0.500.50-0.50
..........................................................................................................................................................TCTGGAGACTGGGAGTGTAA............................................................................2012.002.00------------------2.00------------------------------------------------------------------
............................................................................................................................................................TGGAGACTGGGAGTGTTTATTCA.......................................................................2312.002.00---------------2.00---------------------------------------------------------------------
.........................................................................................................................................................ATCTGGAGACTGGGAGTGTTT............................................................................2112.002.00----------1.00--------------1.00-----------------------------------------------------------
..........................................................................................................................................................TCTGGAGACTGGGAGTGT..............................................................................1812.002.00-1.00-1.00---------------------------------------------------------------------------------
..........................................................................................................................................................TCTGGAGACTGGGAGTGTTA............................................................................2012.0011.00--------------------------------------------------------------------1.00-----1.00----------
............................................................................................................................................................TGGAGACTGGGAGTGTTTAT..........................................................................2012.002.00--------------------------1.00--------------------------------------------1.00-------------
..........................................................................................................................................................TCTGGAGACTGGGAGTGTTTATTTAT......................................................................2611.0043.00----------------------------------------------------------------------1.00--------------
..........................................................................................................................................................TCTGGAGACTGGGAGTGTTAA...........................................................................2111.0011.00---------------------------------------------------------------------------1.00---------
..................................................................................................................................................................................................................CGTGCTACCATCAGCCGCCGCCTCAATGATGTTG......3411.001.00---------------------1.00---------------------------------------------------------------
...............................................................................................AGAACCTTTGTACAGGCC.........................................................................................................................................181.000.00------------------------------------1.00------------------------------------------------
.........................................................................................................................................................ATCTGGAGACTGGGAGTGTTTAT..........................................................................2311.001.00-------------------1.00-----------------------------------------------------------------
...................................................................................................................................................GGTAGCATCTGGAGACTGGGA..................................................................................2111.001.00-------------1.00-----------------------------------------------------------------------
............................................CTGGAAGAGGGTCTGTAGGG..........................................................................................................................................................................................201.000.00---------------------1.00---------------------------------------------------------------
............................................................................................................................................................TGGAGACTGGGAGTGTTTATTCAT......................................................................2411.001.00-------------------------------------------------------------1.00-----------------------
..........................................................................................................................................................TCTGGAGACTGGGAGTGTTTATTCAT......................................................................2611.001.00-------------------1.00-----------------------------------------------------------------
............................................................................................................................................................TGGAGACTGGGAGTGTTTATT.........................................................................2111.001.00----------------------------------------------1.00--------------------------------------
..........................................................................................................................................................TCTGGAGACTGGGAGTGTTTG...........................................................................2111.0017.00------------------------------------------------------------------1.00------------------
..........................................................................................................................................................TCTGGAGACTGGGAGTGTTAAG..........................................................................2211.0011.00-------------------------------------------------1.00-----------------------------------
................................................................................................................................................................................................................TTCGTGCTACCATCAGCCGCCG....................2211.001.00-----------------------------------1.00-------------------------------------------------
...........................................................................................................................................................CTGGAGACTGGGAGTGTTTAT..........................................................................2111.001.00-------------------------1.00-----------------------------------------------------------
........AAAGGTCTCTGTATAATAG...............................................................................................................................................................................................................................191.000.00------1.00------------------------------------------------------------------------------
........................................................................................................................AGTGGGCCAATTTGGGCAC...............................................................................................................191.000.00------1.00------------------------------------------------------------------------------
..........................................................................................................................................................TCTGGAGACTGGGAGTGTTTATTCATGACAG.................................................................3111.001.00-----------------------------------------------------1.00-------------------------------
..................................................................................................................................................................CTGGGAGTGTTTATTAGAC.....................................................................191.000.00--------------------------------------------1.00----------------------------------------
..............................................GGAAGAGGGTCTGTAACTTCATA.....................................................................................................................................................................................231.000.00--------1.00----------------------------------------------------------------------------
...........................................................................................................................................................CTGGAGACTGGGAGTGTTTATT.........................................................................2211.001.00------------1.00------------------------------------------------------------------------
...........................................................................................................................................................CTGGAGACTGGGAGTGTTT............................................................................1911.001.00-------------------------------------------------------1.00-----------------------------
..........................................................................................................................................................TCTGGAGACTGGGAGTGTTTT...........................................................................2111.0017.00---1.00---------------------------------------------------------------------------------
...................................................................................................................................................................TGGGAGTGTTTATTCTCA.....................................................................181.000.00------1.00------------------------------------------------------------------------------
......................................................................................................................CAAGTGGGCCAATTTTGG..................................................................................................................1820.503.00-----------------------------------------------------------------------------------0.50-
......................................................................................................................CAAGTGGGCCAATTTTTGT.................................................................................................................1920.503.00------0.50------------------------------------------------------------------------------

Antisense strand
GTGGTTGAAAAGGTCTCTGTATAGGTACATATGTGCATCTTTCCCTGGAAGAGGGTCTGTAACTTCTTAAAAGGATACAAAGCCCTCAAGGGTTAAGAACCTTTGTACAGGCTTCTCTCAAGTGGGCCAATTTGGTACCTATATCTAGGTAGCATCTGGAGACTGGGAGTGTTTATTCATGACAGTTCCGTCTCCTACAGCTATTTCCTTCGTGCTACCATCAGCCGCCGCCTCAATGATGTTGTCAAAG
..........................................................................................(((.....))).......((((..(((((.(((...(((...((.((((((....)))))).))..)))..)))))))).))))............................................................................
..........................................................................................91........................................................................................181...................................................................
SizePerfect hitTotal NormPerfect NormGSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189785SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040014(GSM532899)
G623N. (cervix)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038853(GSM458536)
MELB. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR040040(GSM532925)
G612N. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR038855(GSM458538)
D10. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR038860(GSM458543)
MM426. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577453(Rovira)
total RNA. (breast)		SRR038862(GSM458545)
MM472. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR040008(GSM532893)
G727N. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.........................................................................................................TACAGGCTTCTCTCAGCT............................................................................................................................... 181.000.00--------------------------------------------------------------1.00----------------------
......................................................................................................TGAGAGAAGCCTGTACAA.................................................................................................................................. 1820.500.50--------------------------------------------------------------------------------0.50----