ID: uc001pym.2_intron_7_0_chr11_122828200_f.5p
GENE: (8)
chr11:122828150-122828399+


(2)
AGO2.ip
(1)
BRAIN
(13)
CELL-LINE
(1)
OTHER
(2)
SKIN

Sense strand
AACCACAAACAGAAAAAACTCAAAAGAAATCTGCTATCCCTCGGCAGAAGGTAAGAAATTCTCAACAAGGCATTTATTTTTTCAAGCAGAATTAAAAGGAAACTTTTATTATCGCTTTTTTTTTTTTTTTTTAATTAGCCACAGAGTCTTGCCGTCTTGCCCAGGATGGTCATAAACTCCTGGGCTCAAGCTATCCTCCAAACTAAGCCTCCCCAAGTGTTGGGAGAGGCACCACACCCAGCCCGTTTTC
...................................................(((((((........(((((.........(((.....))).((((((....)))))).....)))))........))))))).....................................................................................................................
..................................................51..................................................................................135.................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343334SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
.............................................................................................................TATCGCTTTTTTTTTTTTTTAG.......................................................................................................................224.000.002.001.001.00---------------
.............................................................................................................TATCGCTTTTTTTTTTTTTTTTAG.....................................................................................................................243.000.002.001.00----------------
...............................................................................................................TCGCTTTTTTTTTTTTTTTTTCGAG..................................................................................................................253.000.003.00-----------------
.................................................................CAAGGCATTTATTTTTTG.......................................................................................................................................................................182.000.001.00----1.00------------
.............................................................................................................TATCGCTTTTTTTTTTTTAG.........................................................................................................................202.000.00--2.00---------------
..............................................................................................................ATCGCTTTTTTTTTTTTTTTTAG.....................................................................................................................232.000.002.00-----------------
..............................................................................................................ATCGCTTTTTTTTTTTTTTTTTAAGG..................................................................................................................262.000.001.001.00----------------
..............................................................................................................ATCGCTTTTTTTTTTTTTTAAGG.....................................................................................................................232.000.00-2.00----------------
..............................................................................................................ATCGCTTTTTTTTTTTTAG.........................................................................................................................192.000.001.001.00----------------
.............................................................................................................TATCGCTTTTTTTTTTTTTTTAG......................................................................................................................232.000.001.00-1.00---------------
..............................................................................................................ATCGCTTTTTTTTTTTTTTTTTAG....................................................................................................................2421.500.501.50-----------------
...............................................................................................................TCGCTTTTTTTTTTTTTTTTTAAGG..................................................................................................................251.000.001.00-----------------
.............................................................................................................TATCGCTTTTTTTTTTTTTTTTCTT....................................................................................................................251.000.001.00-----------------
........................................................................................................................TTTTTTTTTTTTAATTAGCGGTC...........................................................................................................231.000.001.00-----------------
...............................................................................................................TCGCTTTTTTTTTTTTAT.........................................................................................................................181.000.00--1.00---------------
...............................................................................................................TCGCTTTTTTTTTTTTTTTCGAG....................................................................................................................231.000.00--1.00---------------
.............................................................................................................TATCGCTTTTTTTTTTTTTAG........................................................................................................................211.000.00-1.00----------------
..............................................................................................................................................................................AACTCCTGGGCTCAAGCTATCCCCTG..................................................261.000.00-1.00----------------
..............................................................................................................ATCGCTTTTTTTTTTTTACT........................................................................................................................201.000.00--1.00---------------
.............................................................................................................TATCGCTTTTTTTTTTTTTTTCAG.....................................................................................................................241.000.001.00-----------------
............................................................................................................TTATCGCTTTTTTTTTTTTTAAG.......................................................................................................................231.000.00---1.00--------------
.............................................................................................................TATCGCTTTTTTTTTTTTTTA........................................................................................................................211.000.001.00-----------------
..............................................................................................................ATCGCTTTTTTTTTTTATT.........................................................................................................................191.000.00--1.00---------------
.............................................................................................................TATCGCTTTTTTTTTTTTTTTTTCT....................................................................................................................251.000.001.00-----------------
...............................................................................................................TCGCTTTTTTTTTTTTGCAT.......................................................................................................................201.000.001.00-----------------
..................................................................................................................CTTTTTTTTTTTTTTTTTAATTATCG..............................................................................................................261.000.00-------1.00----------
...............................................................................................................TCGCTTTTTTTTTTTTTGAAA......................................................................................................................211.000.00-1.00----------------
.............................................................................................................TATCGCTTTTTTTTTAGTT..........................................................................................................................191.000.00--1.00---------------
..............................................................................................................ATCGCTTTTTTTTTTTTTCAG.......................................................................................................................211.000.001.00-----------------
...............................................................................................................TCGCTTTTTTTTTTTGAT.........................................................................................................................181.000.001.00-----------------
.............................................................................................................TATCGCTTTTTTTTTTTTTTTTCT.....................................................................................................................241.000.001.00-----------------
...............................................................................................................TCGCTTTTTTTTTTTTTTTTTCCCC..................................................................................................................251.000.001.00-----------------
.............................................................................................................TATCGCTTTTTTTTTTTTTTTCT......................................................................................................................231.000.001.00-----------------
..............................................................................................................ATCGCTTTTTTTTTTTTTTTTCAG....................................................................................................................241.000.001.00-----------------
..............................................................................................................ATCGCTTTTTTTTTTTTTTACTG.....................................................................................................................231.000.00-1.00----------------
..............................................................................................................ATCGCTTTTTTTTTTTAAG.........................................................................................................................191.000.00---1.00--------------
..............................................................................................................ATCGCTTTTTTTTTTTTTTTTTC.....................................................................................................................231.000.00--1.00---------------
..............................................................................................................ATCGCTTTTTTTTTTTTTTTTCC.....................................................................................................................231.000.001.00-----------------
...............................................................................................................TCGCTTTTTTTTTTTGATT........................................................................................................................191.000.00--1.00---------------
...............................................................................................................TCGCTTTTTTTTTTTTTTTTTCCT...................................................................................................................241.000.001.00-----------------
................................................................................................................CGCTTTTTTTTTTTTTTTTTAAAATG................................................................................................................261.000.00---1.00--------------
..............................................................................................................ATCGCTTTTTTTTTTTTTTTTCCG....................................................................................................................241.000.00-------1.00----------
.............................................................................................................TATCGCTTTTTTTTTTTTTTTTTAG....................................................................................................................251.000.001.00-----------------
..............................................................................................................ATCGCTTTTTTTTTTTTTTTTAGA....................................................................................................................241.000.001.00-----------------
..............................................................................................................ATCGCTTTTTTTTTTTTTTTTTAAG...................................................................................................................251.000.001.00-----------------
...............................................................................................................TCGCTTTTTTTTTTTGCG.........................................................................................................................181.000.00-1.00----------------
...............................................................................................................TCGCTTTTTTTTTTTTTTTTTATC...................................................................................................................241.000.001.00-----------------
..................................................GTAAGAAATTCTCAACAAGGCAT.................................................................................................................................................................................2311.001.00-------------1.00----
..............................................................................................................................................AGAGTCTTGCCGTCTTGCCCAGGCTGG.................................................................................271.000.001.00-----------------
.............................................................................................................TATCGCTTTTTTTTTTTTTCCCG......................................................................................................................231.000.00-1.00----------------
..............................................................................................................ATCGCTTTTTTTTTTTTTTTTTGC....................................................................................................................241.000.001.00-----------------
..............................................................................................................ATCGCTTTTTTTTTTTTTTTTTAGAA..................................................................................................................2620.500.500.50-----------------
..............................................................................................................ATCGCTTTTTTTTTTTTTTTTTA.....................................................................................................................2320.500.500.50-----------------

Antisense strand
AACCACAAACAGAAAAAACTCAAAAGAAATCTGCTATCCCTCGGCAGAAGGTAAGAAATTCTCAACAAGGCATTTATTTTTTCAAGCAGAATTAAAAGGAAACTTTTATTATCGCTTTTTTTTTTTTTTTTTAATTAGCCACAGAGTCTTGCCGTCTTGCCCAGGATGGTCATAAACTCCTGGGCTCAAGCTATCCTCCAAACTAAGCCTCCCCAAGTGTTGGGAGAGGCACCACACCCAGCCCGTTTTC
...................................................(((((((........(((((.........(((.....))).((((((....)))))).....)))))........))))))).....................................................................................................................
..................................................51..................................................................................135.................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343334SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................................................................ATCGCTTTTTTTTTTTTTTTTTACG................................................................................................................... 251.000.00----------------1.00-
....................................................................................................................................................................................AGGATAGCTTGAGCCCA..................................................... 1701.001.00--------------1.00---
...................................................................................................................................................................................GAGGATAGCTTGAGCCCAG.................................................... 1901.001.00------1.00-----------
..................................................................................CAAGCAGAATTAAAACTT...................................................................................................................................................... 181.000.00--1.00---------------
.......................................................................................................TTTTATTATCGCTTTAAA................................................................................................................................. 181.000.00------------1.00-----
.................................................................................................................................................................................TCCTGGGCTCAAGCTATCCTCC................................................... 221.000.00-----------1.00------
.......................................................................................................TTTTATTATCGCTTTTTTTTGA............................................................................................................................. 221.000.00--------1.00---------
................................................................................................................................................................................................................................AGAGGCACCACACCCAGCCG...... 201.000.00-----------------1.00
............................................CAGAAGGTAAGAAATTCTTTT......................................................................................................................................................................................... 211.000.00--1.00---------------
....ACAAACAGAAAAAACTTTTA.................................................................................................................................................................................................................................. 201.000.00-1.00----------------
.................................................................................................................................................................................TAGCTTGAGCCCAGGA......................................................... 1601.001.00----------1.00-------
................................................................................................................................................................................CTCCTGGGCTCAAGCTAATTC..................................................... 211.000.00---------------1.00--
...................................................................................................................TTTTTTTTTTTTTTTTTAATTAGCCTG............................................................................................................ 271.000.00-----1.00------------
.................................................................................................................................................................................AGGATAGCTTGAGCCCAGGA..................................................... 2001.001.00----1.00-------------
................................................................................................................................................................................AGGATAGCTTGAGCCCAGGAG..................................................... 2101.001.00----1.00-------------
..............................................................................................................................................................................AACTCCTGGGCTCAAGCTATCCTGAGG................................................. 271.000.00---------1.00--------
...............................................................................................................................................................................GGATAGCTTGAGCCCAGGAGT...................................................... 2101.001.00------1.00-----------