ID: uc001pvi.2_intron_3_0_chr11_118968754_r
GENE: (5)
chr11:118968704-118969162-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(8)
B-CELL 		(3)
BRAIN 		(4)
BREAST 		(18)
CELL-LINE 		(2)
CERVIX 		(2)
HEART 		(1)
HELA 		(1)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(12)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
TTCATGATACCCTTTTTTTTCACCACTTTGGGATTGCTCTACCACAACTGGTAAGTAGGCCTGTGGATAAGGGGACAACTACCTGAACACATGGCAAAGATGGCCCTTATCATAACCCACCTTGTGGTGGTGAAGCTAAACCTGCGCATACCTCTATGGAGTTTTCTGCGTCTTCAGTTGGTCGTATTCTGAAATTTCTCTCTACCCAGTAGTAGTTAGGGATGAGTGCGTGGAGGCCCCAGGAATAGATGAATTCAGGGCCTTGGATCCTGCAGAGTTGCTGCACAACTGGAGTCTCCTCTGAGTCAGAACTAGGGTCAGGGCTAGTCCAGTGCCCATAGGGTGTGATGTGAGAGAAGGGATTGGTAATGCCTCTTGCCACTGGCTCGGATCCTCTTCCCCCACACAGGTACCCATCACGGGTGTTTGTGGGAGATACCTTCTGTTACTTTGCTGGCA
......................................................................................................................................................................................................................................................................................................................................................(((((....(((((..(((..((((((......))))))....))).....)))))....)))))....................................................
....................................................................................................................................................................................................................................................................................................................................................341.................................................................409................................................
SizePerfect hitTotal NormPerfect NormSRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189784SRR189782SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189786SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040029(GSM532914)
G026T. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038862(GSM458545)
MM472. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR040035(GSM532920)
G001T. (cervix)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................................................................................................................................................................................................................................................................................................................................................................TCGGATCCTCTTCCCCCACACAGT.................................................249.000.008.001.00--------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................TGATGTGAGAGAAGGGATTGGTA...........................................................................................2316.006.00----1.00-1.00----------------------------1.00--------------1.001.00---1.00--
.................................................................................................................................................................................................................................................................................................................................................................................................CTCGGATCCTCTTCCCCCACACA...................................................2313.003.00--1.00------1.00----1.00-------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................TGATGTGAGAGAAGGGATTGGT............................................................................................2213.003.00---2.00---1.00--------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................CTCGGATCCTCTTCCCCCACACAGT.................................................2512.001.00-----------1.00-------------------------------------1.00--------
......................CCACTTTGGGATTGCTCTA..................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002.00----------2.00-----------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................TGATGTGAGAGAAGGGATTGG.............................................................................................2112.002.00----------------1.00-----------------1.00-----------------------
.........................................................................................................................................................................................................................................................................................................................................................TGATGTGAGAGAAGGGACTGG.............................................................................................212.000.00-----2.00----------------------------------------------------
...........................................................................................................................................................................................TCTGAAATTTCTCTCAGG..............................................................................................................................................................................................................................................................182.000.00-----------------1.00----1.00-----------------------------------
............................................................................................................................................................................................................................................................................................................................................................TGTGAGAGAAGGGATTGGTAAT.........................................................................................2212.002.00-----------------------------------------1.00-1.00--------------
.........................................................................................................................................................................................................................................................................................................................................................TGATGTGAGAGAAGGGATTGGCA...........................................................................................2311.002.00-----1.00----------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................ATGTGAGAGAAGGGATTGGTAATGC.......................................................................................2511.001.00---1.00------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................TGATGTGAGAGAAGGGATTGA.............................................................................................211.000.00------------------------------------------------1.00---------
...........................................................................................................................................................................................................................................................................................................................................................................................................................ACCCATCACGGGTGTTTGTGGGAGATA.....................2711.001.00--------1.00-------------------------------------------------
...........................................................................CAACTACCTGAACACATGGCAAAGATGG....................................................................................................................................................................................................................................................................................................................................................................2811.001.00---------------------1.00------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................GATGTGAGAGAAGGGATTGGTAA..........................................................................................2311.001.00-------------------1.00--------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGAGAGAAGGGATTGGAGAG.........................................................................................201.000.00--1.00-------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................TGATGTGAGAGAAGGGATTGGCAA..........................................................................................2411.002.00-------------------------------1.00--------------------------
.........................................................................................................................................................................................................................................................................................................................................................TGATGTGAGAGAAGGGATTGGAA...........................................................................................2311.002.00-----------1.00----------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................CTCGGATCCTCTTCCCCCACACAGAAAA..............................................2811.001.00------1.00---------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................ATGTGAGAGAAGGGATTGGTAA..........................................................................................2211.001.00----1.00-----------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................CGGATCCTCTTCCCCTG.......................................................171.000.00-----------------------------1.00----------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................TACCCATCACGGGTGTTTGTG............................2111.001.00-------------------------------------1.00--------------------
..................................................GTAAGTAGGCCTGTGGATAAGGGG.................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00--------------------------1.00-------------------------------
................................................................................................................................................................................GTTGGTCGTATTCTGATTTG.......................................................................................................................................................................................................................................................................201.000.00-1.00--------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGAGAGAAGGGATTGGATAG.........................................................................................201.000.00--1.00-------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................GTGATGTGAGAGAAGGGATTGG.............................................................................................2211.001.00----------------------------------------------1.00-----------
....................................CTCTACCACAACTGGTAAGTAGGCCT.............................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00---------------1.00------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................TACCCATCACGGGTGTTTGT.............................2011.001.00------------1.00---------------------------------------------
......ATACCCTTTTTTTTCACCACCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................241.000.00-----------------------------------------------------1.00----
.........................................................................................................................................................................................................................................................................................................................................................TGATGTGAGAGAAGGGATTGGTAATG........................................................................................2611.001.00--------------------------------------------1.00-------------
.............................................................................................................................................................................................................................................................................................................................................................................................CTGGCTCGGATCCTCTTCCCCCACACAGAA................................................301.000.00----------------------------1.00-----------------------------
...........................................................................................................................................................................................................................................................................................................................................................ATGTGAGAGAAGGGATTGGTAT..........................................................................................221.000.00---------------------------------1.00------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTTTGTGGGAGATACCTTCTGTT............2611.001.00---------------------------------------1.00------------------
............................................................................................................................................................................................................................................................................................................................................................TGTGAGAGAAGGGATTGGTAATGC.......................................................................................2411.001.00--------------------1.00-------------------------------------
............................................................................................................................................................................................................................................................................................................................................................TGTGAGAGAAGGGATTGGT............................................................................................1911.001.00---------------------------1.00------------------------------
.........................................................................................................................................................................................................................................................................................................................................................TGATGTGAGAGAAGGGATTGGTAT..........................................................................................2411.006.00-----------------------------------------------1.00----------
...........................................................................................................................................................................................................................................................................................................................................................ATGTGAGAGAAGGGATTGGTAATG........................................................................................2411.001.00-------------------------1.00--------------------------------
.........................................................................GACAACTACCTGAACACATGGCAA..........................................................................................................................................................................................................................................................................................................................................................................2411.001.00------------------------------------------1.00---------------
..................................................GTAAGTAGGCCTGTGGATAAGGGGAC...............................................................................................................................................................................................................................................................................................................................................................................................2611.001.00----------------------------------------1.00-----------------
................................................................................ACCTGAACACATGGCAAAGATGGCC..................................................................................................................................................................................................................................................................................................................................................................2511.001.00--------------------------------1.00-------------------------
.........................................................................................................................................................................................................................................................................................................................................................TGATGTGAGAGAAGGGATTGGTTAT.........................................................................................2511.003.00----1.00-----------------------------------------------------
...........................TTGGGATTGCTCTACCAT..............................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00--------------------------------------------------------1.00-
......................................................................................................................................................................................................................................................................................................................................................GTGTGATGTGAGAGAAGGGATTGGTAA..........................................................................................2711.001.00-------------1.00--------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................TGTGAGAGAAGGGATTGGTAATG........................................................................................2311.001.00---------------------------------------------1.00------------
.........................................................................................................................................................CTATGGAGTTTTCTGCG.................................................................................................................................................................................................................................................................................................1711.001.00------------------------------1.00---------------------------
.........................................................................................................................................................................................................................................................................................................................................................TGATGTGAGAGAAGGGATTGGTAA..........................................................................................2411.001.00-------1.00--------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................CTCGGATCCTCTTCCCCCACACAG..................................................2411.001.00--------1.00-------------------------------------------------
...................................................................................TGAACACATGGCAAAGATGGCCC.................................................................................................................................................................................................................................................................................................................................................................2311.001.00--------------------------------------1.00-------------------
...........................................................................................................TATCATAACCCACCTAGTC.............................................................................................................................................................................................................................................................................................................................................191.000.00-1.00--------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................GTGATGTGAGAGAAGGGATTGGTA...........................................................................................2411.001.00---------1.00------------------------------------------------
........................................................................................................................CTTGTGGTGGTGAAGCT..................................................................................................................................................................................................................................................................................................................................1711.001.00------------------------1.00---------------------------------
........................................................................................ACATGGCAAAGATGGC...................................................................................................................................................................................................................................................................................................................................................................1640.500.50---------------------------------------------------------0.50

Antisense strand
TTCATGATACCCTTTTTTTTCACCACTTTGGGATTGCTCTACCACAACTGGTAAGTAGGCCTGTGGATAAGGGGACAACTACCTGAACACATGGCAAAGATGGCCCTTATCATAACCCACCTTGTGGTGGTGAAGCTAAACCTGCGCATACCTCTATGGAGTTTTCTGCGTCTTCAGTTGGTCGTATTCTGAAATTTCTCTCTACCCAGTAGTAGTTAGGGATGAGTGCGTGGAGGCCCCAGGAATAGATGAATTCAGGGCCTTGGATCCTGCAGAGTTGCTGCACAACTGGAGTCTCCTCTGAGTCAGAACTAGGGTCAGGGCTAGTCCAGTGCCCATAGGGTGTGATGTGAGAGAAGGGATTGGTAATGCCTCTTGCCACTGGCTCGGATCCTCTTCCCCCACACAGGTACCCATCACGGGTGTTTGTGGGAGATACCTTCTGTTACTTTGCTGGCA
......................................................................................................................................................................................................................................................................................................................................................(((((....(((((..(((..((((((......))))))....))).....)))))....)))))....................................................
....................................................................................................................................................................................................................................................................................................................................................341.................................................................409................................................
SizePerfect hitTotal NormPerfect NormSRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189784SRR189782SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189786SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040029(GSM532914)
G026T. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038862(GSM458545)
MM472. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR040035(GSM532920)
G001T. (cervix)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..........................................................................................................TTATCATAACCCACCCA................................................................................................................................................................................................................................................................................................................................................ 171.000.00------------------------------------------------------1.00---
...................................................................................................................................................................................................................................................................................................................................................................................CCTCTTGCCACTGGCTAC...................................................................... 181.000.00----------------------------------------------------1.00-----
..................................................................................................................................................................TTTCTGCGTCTTCAGTG........................................................................................................................................................................................................................................................................................ 171.000.00------------------------------------1.00---------------------
......................................................GTAGGCCTGTGGATAAATA.................................................................................................................................................................................................................................................................................................................................................................................................. 191.000.00--1.00-------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................TTCCCCCACACAGGTTGGA............................................ 191.000.00-----------------------1.00----------------------------------
..........CCTTTTTTTTCACCACTTCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................ 211.000.00------------------1.00---------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGGGTGTTTGTGATAT........................ 191.000.00-1.00--------------------------------------------------------
..........AAGTGGTGAAAAAAAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................... 1820.500.50------------0.50---------------------------------------------