ID: uc001pug.2_intron_2_0_chr11_118773618_r
GENE: (5)
chr11:118773568-118773748-


(1)
B-CELL
(1)
BRAIN
(1)
BREAST
(6)
CELL-LINE
(3)
HEART
(6)
HELA
(1)
LIVER
(1)
OTHER
(8)
SKIN

Sense strand
CCATCCTCGCCTACCACCAGCAGAACGTGCCCCGGGCCAAGCTTGACCAGGTGAGCGTGGCGCCTCTGTGAGCAGCAGGACTGGGTGGAACGTCCCCTTACCTGTCTCATGCTCTCTTTGTCCTTCTGCAGGCCCCTAAAGTGCCCCCCACCCCAGAACCGCTACCCCTGAGCACGCCGTC
.....................................................................((((((((((...(((.((.....)))))..)))))....)))))...................................................................
...........................................................60.....................................................................131................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038854(GSM458537)
MM653. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................GTGAGCGTGGCGCCTCTGTGAGCAGCAGGACTGGGTGGAACGTCCCCTTACCTGTCTCATGCTCTCTTTGTCCTTCTGCAG..................................................81152.0052.0037.0011.004.00-------------------------
.............CCACCAGCAGAACGTGC.......................................................................................................................................................1712.002.00----2.00-----------------------
..............................................................................................................................................................CCGCTACCCCTGAGC........1511.001.00-----1.00----------------------
.........................................................................................................................................................CAGAACCGCTACCCCTGAGCACG.....2311.001.00---1.00------------------------
........................................................................................................................................TAAAGTGCCCCCCACCTAG..........................191.000.00-------------1.00--------------
..................................................GTGAGCGTGGCGCCTCTGTGAGCAGCAGGACTGGGTGGAACGTCCCCTTACCTGTCTCATGCTCTCTTTGTCCTTCTGC....................................................7911.001.00----------------1.00-----------
.............................................ACCAGGTGAGCGTGGAG.......................................................................................................................171.000.00-----------1.00----------------
..................AGCAGAACGTGCCCCGGGCCAAGCT..........................................................................................................................................2511.001.00---1.00------------------------
.........................................................................................................................................................CAGAACCGCTACCCCTGAGCA.......2111.001.00---1.00------------------------
...................GCAGAACGTGCCCCGGGC................................................................................................................................................1811.001.00---------1.00------------------
......................GAACGTGCCCCGGGCCAAGCTTG........................................................................................................................................2311.001.00---------------------1.00------
..............................................................................................................GCTCTCTTTGTCCTTCTGCAGT.................................................221.000.00--------1.00-------------------
................................................................TCTGTGAGCAGCAGGACTGGG................................................................................................2111.001.00--------------1.00-------------
..................................................GTGAGCGTGGCGCCTCTGTGAGCAGCAGGA.....................................................................................................3011.001.00-------------------1.00--------
.................................GGGCCAAGCTTGACCAG...................................................................................................................................1711.001.00-----1.00----------------------
......................................................GCGTGGCGCCTCTGTGAGCAGCAGGACTGGGTGGAACGTCCCCTTACCTGTCTCATGCTCT..................................................................6111.001.00-------------------------1.00--
........................................................GTGGCGCCTCTGTGAGCAGCAGGAC....................................................................................................2511.001.00----------1.00-----------------
....................................................................TGAGCAGCAGGACTGGGTG..............................................................................................1911.001.00-----------------------1.00----
.........................................................................AGCAGGACTGGGTGGAACGTC.......................................................................................2111.001.00------------------------1.00---
......................................................................AGCAGCAGGACTGGGTGGAAC..........................................................................................2111.001.00----------------------1.00-----
....................CAGAACGTGCCCCGGGCC...............................................................................................................................................1811.001.00--------------------1.00-------
.................................................................CTGTGAGCAGCAGGACTGGGTGGA............................................................................................2411.001.00------------1.00---------------
..................AGCAGAACGTGCCCCGGGCCAA.............................................................................................................................................2211.001.00-------1.00--------------------
..................................................GTGAGCGTGGCGCCTCTGTGAGCAGCAGGACT...................................................................................................3211.001.00-----------------1.00----------
..................................................GTGAGCGTGGCGCCTCTGTGAGCAGCAGGACTG..................................................................................................3311.001.00---------------1.00------------
..................................GGCCAAGCTTGACCAGG..................................................................................................................................1720.500.50--------------------------0.50-
.............CCACCAGCAGAACGTG........................................................................................................................................................1640.250.25---------------------------0.25
.........................................................................AGCAGGACTGGGTGGA............................................................................................1660.170.17---------------------------0.17

Antisense strand
CCATCCTCGCCTACCACCAGCAGAACGTGCCCCGGGCCAAGCTTGACCAGGTGAGCGTGGCGCCTCTGTGAGCAGCAGGACTGGGTGGAACGTCCCCTTACCTGTCTCATGCTCTCTTTGTCCTTCTGCAGGCCCCTAAAGTGCCCCCCACCCCAGAACCGCTACCCCTGAGCACGCCGTC
.....................................................................((((((((((...(((.((.....)))))..)))))....)))))...................................................................
...........................................................60.....................................................................131................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038854(GSM458537)
MM653. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................................................................CTCTCTTTGTCCTTCTGGTT.................................................. 201.000.00------1.00---------------------
....................................CCAAGCTTGACCAGGAGGC.............................................................................................................................. 191.000.00------------------1.00---------