ID: uc001psv.2_intron_8_0_chr11_118245945_f.3p
GENE: (9)
chr11:118247089-118247338+


(1)
BRAIN 		(1)
BREAST 		(15)
CELL-LINE 		(2)
HEART 		(2)
LIVER 		(2)
OTHER 		(3)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TTTTGGTGATTTCATGAAAAAGATTTAACTGTATTTCTGTAGACGGTGAGAAACCAAAAGATATATTCAGACAAAGAACTAATATGACAAGATATGTTTTTAAGAAGATATCACTGCTAACAGTATGGAAATTGAATGAGTGTAAGAGGAGACTGGAGACCAAGACATTTACCCTCTTTTTTTTTTTTAACTTCTTTGAGGTTTGGACAAAGAAACCTGTTTGATCCCAGCTGTGCAGGAGCCGAAGTTT
.......................................................................(((((((............(((((.(((....))).))))).............((((((..(((.(((.((((.((....))((...)).......)))).)))..)))..))))))..)))))))....................................................
.............................................................62........................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR189784SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
.............................................................................................................................................................................CTCTTTTTTTTTTTTAACCCAG.......................................................2279.000.0043.0025.008.003.00-------------------------
..................................................................TCAGACAAAGAACTAATATG....................................................................................................................................................................20111.0011.00----8.00---3.00--------------------
............................................................................................................................................................................CCTCTTTTTTTTTTTTACTG..........................................................207.000.00-3.002.002.00-------------------------
...............................................................................................................................................................................CTTTTTTTTTTTTAACTTCCTG.....................................................226.000.002.004.00---------------------------
..........................................................................................................................................................................ACCCTCTTTTTTTTTTTAAAG...........................................................214.000.001.002.001.00--------------------------
.........................................................................................................................................................................TACCCTCTTTTTTTTTTTTAAAG..........................................................234.000.002.001.00-1.00-------------------------
.............................................................................................................................................................................CTCTTTTTTTTTTTTAACCCCG.......................................................223.000.00-2.001.00--------------------------
.............................................................................................................................................................................CTCTTTTTTTTTTTTAACCCAA.......................................................223.000.002.00--1.00-------------------------
.........................................................................................................................................................................TACCCTCTTTTTTTTTTTAAAG...........................................................223.000.002.00--1.00-------------------------
............................................................................................................................................................................CCTCTTTTTTTTTTTTAACAG.........................................................212.000.001.00-1.00--------------------------
...........................................................................................................................................................................................................................TTTGATCCCAGCTGTGCAGGAGCCGAAG...2812.002.00----------2.00------------------
...............................................................................................................................................................................CTTTTTTTTTTTTAACTCTAG......................................................212.000.00-1.001.00--------------------------
..................................................................................................................................................................................TTTTTTTTTTAACTTCTCCGG...................................................212.000.00------2.00----------------------
..............................................................................................................................................................................TCTTTTTTTTTTTTAACTTCTTCAT...................................................251.000.00-1.00---------------------------
.....................................................................................................................................................................................................................AACCTGTTTGATCCCAGCTGTGC..............2311.001.00-----------------1.00-----------
.....................................................................................................................................................................................................GAGGTTTGGACAAAGAAAC..................................1911.001.00-----------------------1.00-----
.........................................................................................................................................................................TACCCTCTTTTTTTTTTTTAAG...........................................................221.000.001.00----------------------------
..........................................................................................................................................................................ACCCTCTTTTTTTTTTCACA............................................................201.000.00---------1.00-------------------
............................................................................................................................................................................CCTCTTTTTTTTTTTTATATG.........................................................211.000.001.00----------------------------
..................................................................................................................................................................................................................AGAAACCTGTTTGATCCCAGCT..................2211.001.00----------------1.00------------
...............................................................................................................................................................................CTTTTTTTTTTTTAACTCTGG......................................................211.000.00-------1.00---------------------
.............................................................................................................................................................................CTCTTTTTTTTTTTTAACTTTCCG.....................................................241.000.00--1.00--------------------------
.........................................................................................................................................................................TACCCTCTTTTTTTTTTTAAAT...........................................................221.000.00-1.00---------------------------
............................................................................................................................................................................CCTCTTTTTTTTTTTTACTAT.........................................................211.000.00---1.00-------------------------
.........................................................................................................................................................................TACCCTCTTTTTTTTTTTATAG...........................................................221.000.001.00----------------------------
....................................................................................................................................................................................................................................AGCTGTGCAGGAGCCGAAG...1911.001.00---------------------------1.00-
...............................................................................................................................................................................CTTTTTTTTTTTTAACTTCTCTTT...................................................241.000.001.00----------------------------
..............................GTATTTCTGTAGACGGTG..........................................................................................................................................................................................................1811.001.00-------------1.00---------------
.........................................................................................................................................................................TACCCTCTTTTTTTTTTTTAAA...........................................................221.000.001.00----------------------------
...................................................................................................................................................................................TTTTTTTTTAACTTCTTGTC...................................................201.000.00---------1.00-------------------
.........................................................................................................................................................................TACCCTCTTTTTTTTTAAAG.............................................................201.000.00--1.00--------------------------
..............................................................................................................................................................................TCTTTTTTTTTTTTAACTTCAATC....................................................241.000.001.00----------------------------
............................................................................................................................................................................CCTCTTTTTTTTTTTTATTGT.........................................................211.000.00-1.00---------------------------
...............................TATTTCTGTAGACGGTGAGAAACCAAAAGAT............................................................................................................................................................................................3111.001.00-----------1.00-----------------
............................................................................................................................................................................CCTCTTTTTTTTTTTTACTTG.........................................................211.000.00-1.00---------------------------
.................................................................TTCAGACAAAGAACTAATATGACAAGAT.............................................................................................................................................................2811.001.00-----------1.00-----------------
.............................................GTGAGAAACCAAAAGATTTCG........................................................................................................................................................................................211.000.00-----1.00-----------------------
..........................................................................................................................................AGTGTAAGAGGAGACTGGAGACCAAGACATTT................................................................................3211.001.00---------------1.00-------------
.........................................................................................................................................................................TACCCTCTTTTTTTTTTAAAG............................................................211.000.00-1.00---------------------------
...........................................................................................................................................................................CCCTCTTTTTTTTTTTTACAG..........................................................211.000.00--1.00--------------------------
...............................................................................................................................................................................CTTTTTTTTTTTTAACTTCTAAG....................................................231.000.001.00----------------------------
..........................................................................................................................................................................................................TTGGACAAAGAAACCTGCT.............................191.000.00-----1.00-----------------------
..........................................................................................................................................................................ACCCTCTTTTTTTTTGTAG.............................................................191.000.00-------1.00---------------------
..................................TTCTGTAGACGGTGAGAAACCAAAAGATA...........................................................................................................................................................................................2911.001.00--------------------1.00--------
..........................................................................................................................................................................................................................GTTTGATCCCAGCTGTGCAGGAGCCGAAGTT.3111.001.00----------------------------1.00
.............................................................................................................................................................................CTCTTTTTTTTTTTTAACGTG........................................................211.000.00-----1.00-----------------------
...............................................................................................................................................................................CTTTTTTTTTTTTAACTTCTTCAG...................................................241.000.00--1.00--------------------------
...............................................................................................................................................................................CTTTTTTTTTTTTAACTTCTTTGGG..................................................251.000.00-------1.00---------------------
...........................ACTGTATTTCTGTAGACGGTGAGAAACCA..................................................................................................................................................................................................2911.001.00------------------1.00----------
..............................GTATTTCTGTAGACGGTGAGAAA.....................................................................................................................................................................................................2311.001.00------------1.00----------------
...............................................................................................................................................AAGAGGAGACTGGAGACCA........................................................................................1911.001.00--------------1.00--------------
..........................................................................................................................................................................ACCCTCTTTTTTTTTTAAAG............................................................201.000.00-1.00---------------------------
.............................................................................................................................................................................................................................TGATCCCAGCTGTGCAGGAGC........2111.001.00---------------------1.00-------
...............................................................................................................................................................................CTTTTTTTTTTTTAACTTCCCT.....................................................221.000.001.00----------------------------
...................................................................................................................................................GGAGACTGGAGACCAAGACATTT................................................................................2311.001.00--------------------------1.00--
..............................................................................................................................................................................TCTTTTTTTTTTTTAACTTCCTTG....................................................241.000.00--1.00--------------------------
.............................................................................................................................................................................CTCTTTTTTTTTTTTAACCCGT.......................................................221.000.001.00----------------------------
..............................................................................................................................................................................TCTTTTTTTTTTTTAACTTCCTG.....................................................231.000.00---------1.00-------------------
.................................................................................................................................................GAGGAGACTGGAGACCAAGACA...................................................................................2211.001.00------------------------1.00----
............................................................................................................................................................................CCTCTTTTTTTTTTTTACTCG.........................................................211.000.00---1.00-------------------------
.....................................................................................................................................................................................................................AACCTGTTTGATCCCACA...................181.000.00----------------------1.00------
.........................................................................................................................................................................................................................TGTTTGATCCCAGCTGTGCAGGAGCC.......2611.001.00-------------------------1.00---
......................................................................................................................................................................ATTTACCCTCTTTTTTTCGTT...............................................................211.000.00-1.00---------------------------
.........................................................................................................................................................................TACCCTCTTTTTTTTAAAG..............................................................191.000.00-1.00---------------------------
..........................................................................................................................................................................ACCCTCTTTTTTTTTTTTAAAAG.........................................................231.000.00-1.00---------------------------
...........................................................................................................................................................................CCCTCTTTTTTTTTTTTACAGG.........................................................221.000.00------1.00----------------------
........................................................................................................................................................................TTACCCTCTTTTTTTTTTTG..............................................................201.000.00-1.00---------------------------
..........................................................................................................................................................................ACCCTCTTTTTTTTTTTTCCG...........................................................211.000.001.00----------------------------
.............................................................................................................................................................................CTCTTTTTTTTTTTTAACCTAA.......................................................221.000.001.00----------------------------
...............................................................................................................................................................................CTTTTTTTTTTTTAACTTCTCAG....................................................231.000.00-1.00---------------------------
..........................................................................................................................................................................ACCCTCTTTTTTTTTTTTA.............................................................1970.140.140.14----------------------------

Antisense strand
TTTTGGTGATTTCATGAAAAAGATTTAACTGTATTTCTGTAGACGGTGAGAAACCAAAAGATATATTCAGACAAAGAACTAATATGACAAGATATGTTTTTAAGAAGATATCACTGCTAACAGTATGGAAATTGAATGAGTGTAAGAGGAGACTGGAGACCAAGACATTTACCCTCTTTTTTTTTTTTAACTTCTTTGAGGTTTGGACAAAGAAACCTGTTTGATCCCAGCTGTGCAGGAGCCGAAGTTT
.......................................................................(((((((............(((((.(((....))).))))).............((((((..(((.(((.((((.((....))((...)).......)))).)))..)))..))))))..)))))))....................................................
.............................................................62........................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR189784SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
..................................................................................................................................................AGGAGACTGGAGACCAACTT.................................................................................... 201.000.00-------------------1.00---------