ID: uc001pig.2_intron_1_0_chr11_104897084_r
GENE: (7)
chr11:104897034-104897618-


(2)
BREAST
(7)
CELL-LINE
(1)
CERVIX
(3)
HEART
(3)
LIVER
(2)
OTHER
(14)
SKIN
(1)
UTERUS

Sense strand
ATATGCAAGAATATGCCTGTTCCTGTGATGTGGAGGAAATTTTCCGCAAGGTAAGATGCTAGTGGATGCTATTTTCACTCTACTTCCCTGAATGCTTGGCTATTGCAATTGGAAGCATAGAAAGCAGATCCAGACAAGTTTATCTTCCAATAATGCTCTTCTTTCCAAAAGAGTTTTGGAGTTCTTTGGAGAGTGGACAAACCCAGGAGCCTAATCCAATCTATTAAGACCCACAGCCTTGAGAAAACAATCATTTAGTTTCACCCCGCTCCTGCCCTGCAGAGACAAATGAATGGACTCTAATTTACCTGTGTCTCTCATGGCTATTAGATCCAGCAGCAGATTTAAAATGCCCTGAGGAGGGTCATTCAATGCTTACATACATATATGGTTATACTTGTTGCAGATGGAAGTACTTTTTGTTTTTGTCACTTATTTTGCTATATTTGTTGTAGTTTTTTGGCATAACTCAAGAAATTCTTGAAAAAAAAAACTCAGCAAAAAAAAGGGCTACAGACTTTCCTTACTCTTTTAGGTTCGATTTTCATTTGAGCAGCCAGATGGTAGAGCGCAGATGCCCACCAC
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................(((((((.((((((((........(((((.....)))))...)))))))))))))))...................................................................................
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................443...............................................................509..........................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189787SRR343336SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189786SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040009(GSM532894)
G727T. (cervix)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189785SRR029128(GSM416757)
H520. (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR343337SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTAGTTTTTTGTTTA.......................................................................................................................1911.000.0011.00----------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTAGTTTTTTGTATA.......................................................................................................................1910.000.009.00--1.00-------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTAGTTTTTTGTATG.......................................................................................................................195.000.005.00----------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATGGTAGAGCGCT............163.000.00--------2.00-----------1.00--------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTATATTTGTTGGAGT.................................................................................................................................193.000.00----2.00---------------------------------1.00--
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTAGTTTTTTGTAT........................................................................................................................182.000.002.00----------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTAGTTTTTTGTCTA.......................................................................................................................192.000.002.00----------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTAGTTTTTTGTTC........................................................................................................................182.000.00----------1.00---------------1.00--------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAACTCAGCAACTAT................................................................................192.000.00------2.00----------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTAGTTTTTTGG..........................................................................................................................1641.251.251.25----------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGATGGTAGAGCGC.............1711.001.00----------------1.00------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCAGCCAGATGGTAGAGCG..............2311.001.00--1.00--------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCAGCCAGATGGTAGA.................1911.001.00--1.00--------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGATGGAAGTACTTTTTGTT.................................................................................................................................................................2411.001.00---------------------------------1.00-------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTAGTTTTTTGTCG........................................................................................................................181.000.001.00----------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTAGTTTTTTGTTCA.......................................................................................................................191.000.001.00----------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCAGCCAGATGGTAGAGC...............2111.001.00----------------------------------1.00------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCAGCCAGATGGTAGAGCGCAGATGC.......3011.001.00----------------------------1.00------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAGCAGCCAGATGGTAGAGCGC.............2511.001.00-------------1.00---------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTAGTTTTTTGTAC........................................................................................................................181.000.001.00----------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATGGTAGAGCGCTTAA.........191.000.00---------------1.00-------------------------
.................................AGGAAATTTTCCGCAAGGTTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................221.000.00------------------------------1.00----------
................................................AGGTAAGATGCTAGTGGATGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00----------------------1.00------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTAGTTTTTTGTTTC.......................................................................................................................191.000.001.00----------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCAGATGGTAGAGCGCAGATGCCCAC...2911.001.00------------------------------------1.00----
................................................................................................................................................................................................................................................................................................................................................................CCCTGAGGAGGGTCATCAGG.....................................................................................................................................................................................................................201.000.00------------1.00----------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATGGTAGAGCGCAGATGCC......2211.001.00-----------1.00-----------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAGCAGCCAGATGGTAGAGCGCAGATGC.......3111.001.00--------------------------------1.00--------
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGTTTTTGTCACTTGC.....................................................................................................................................................201.000.00-----1.00-----------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAGCAGCCAGATGGTAGAGC...............2311.001.00--1.00--------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATGGTAGAGCGCTCGC.........191.000.00-------------------------------------1.00---
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCAGATGGTAGAGCGCAGATGCCCA....2811.001.00-----------------------------1.00-----------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTAGTTTTTTGTGT........................................................................................................................181.000.001.00----------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATGGTAGAGCGCTC...........171.000.00-------1.00---------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGTAGAGCGCAGATGC.......2011.001.00---------1.00-------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATGGTAGAGCGCTCC..........181.000.00------------------1.00----------------------
......................................................................ATTTTCACTCTACTTTTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00------------------------1.00----------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCAGATGGTAGAGCGCAGATGCCC.....2711.001.00-------1.00---------------------------------
.............................................................................................................................................................................TTTTGGAGTTCTTTGGAGAGTGGAC...................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00-------------------1.00---------------------
.............................................................................................................................................................................................................................................................................................................................................CAGCAGCAGATTTAAACTG.........................................................................................................................................................................................................................................191.000.001.00----------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGATGGTAGAGCGCAGATGCC......2411.001.00---------1.00-------------------------------
...........................................................................................................................................................................................................................................................................................................................................TCCAGCAGCAGATTTTG.............................................................................................................................................................................................................................................171.000.001.00----------------------------------------
.............................................................................................................TGGAAGCATAGAAAGTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.001.00----------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTAGTTTTTTGGATA.......................................................................................................................1940.251.25----------0.25------------------------------
..........................GATGTGGAGGAAATTTTCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.250.25----------------------------------------0.25
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTAGTTTTTTGGACGT......................................................................................................................2040.251.250.25----------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATTTGAGCAGCCAG.........................1740.250.25---------------------------------------0.25-
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTAGTTTTTTGGTTCT......................................................................................................................2040.251.250.25----------------------------------------
.....................................................................................................................................................................................................................................................................................................................................ATTAGATCCAGCAGC.....................................................................................................................................................................................................................................................1550.200.20-----------0.20-----------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCTTTTAGGTTC..............................................1590.110.11-0.11---------------------------------------

Antisense strand
ATATGCAAGAATATGCCTGTTCCTGTGATGTGGAGGAAATTTTCCGCAAGGTAAGATGCTAGTGGATGCTATTTTCACTCTACTTCCCTGAATGCTTGGCTATTGCAATTGGAAGCATAGAAAGCAGATCCAGACAAGTTTATCTTCCAATAATGCTCTTCTTTCCAAAAGAGTTTTGGAGTTCTTTGGAGAGTGGACAAACCCAGGAGCCTAATCCAATCTATTAAGACCCACAGCCTTGAGAAAACAATCATTTAGTTTCACCCCGCTCCTGCCCTGCAGAGACAAATGAATGGACTCTAATTTACCTGTGTCTCTCATGGCTATTAGATCCAGCAGCAGATTTAAAATGCCCTGAGGAGGGTCATTCAATGCTTACATACATATATGGTTATACTTGTTGCAGATGGAAGTACTTTTTGTTTTTGTCACTTATTTTGCTATATTTGTTGTAGTTTTTTGGCATAACTCAAGAAATTCTTGAAAAAAAAAACTCAGCAAAAAAAAGGGCTACAGACTTTCCTTACTCTTTTAGGTTCGATTTTCATTTGAGCAGCCAGATGGTAGAGCGCAGATGCCCACCAC
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................(((((((.((((((((........(((((.....)))))...)))))))))))))))...................................................................................
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................443...............................................................509..........................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189787SRR343336SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189786SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040009(GSM532894)
G727T. (cervix)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189785SRR029128(GSM416757)
H520. (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR343337SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGAAATTCTTGAAAATAC............................................................................................... 212.000.00-2.00---------------------------------------
....................................................................................................................................................................................................................................................................................................................................................AGATTTAAAATGCCCTGTGT................................................................................................................................................................................................................................. 201.000.00-1.00---------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................GTTATACTTGTTGCATCTG................................................................................................................................................................................ 191.000.00-----------------------1.00-----------------
.............................................................................................................................................................................................................................................................................................................................................................................CATTCAATGCTTACATGG.......................................................................................................................................................................................................... 181.000.00---1.00-------------------------------------
..........................................................................................................................................................................................................CCAGGAGCCTAATCCAATAGG.......................................................................................................................................................................................................................................................................................................................................................................... 211.000.00---1.00-------------------------------------
.............................................................................................................................................................................................................................................................................................................................................CAGCAGCAGATTTAAAATTC........................................................................................................................................................................................................................................ 201.000.00--------------1.00--------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAAAAAAAAAACTTCG....................................................................................... 191.000.00-----1.00-----------------------------------
.................................................................................................................................................................................................................................................................GTTTCACCCCGCTCCGA....................................................................................................................................................................................................................................................................................................................... 171.000.001.00----------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAGGGCTACAGCT................................................................... 191.000.00---------------------------1.00-------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTACTTTTTGTTTAT.............................................................................................................................................................. 181.000.00-------------------------1.00---------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTTTTTGTCACTATT..................................................................................................................................................... 191.000.00-------------------------------1.00---------
.ACAGGCATATTCTTGCATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1911.001.00---------------------1.00-------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTACTTTTTGTTTTGCA............................................................................................................................................................ 201.000.00-----------------------------------1.00-----
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAACTCAGCAGTCG................................................................................. 201.000.001.00----------------------------------------
..............GCCTGTTCCTGTGATGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 171.000.00-----------------1.00-----------------------