| (1) B-CELL | (1) BRAIN | (1) BREAST | (8) CELL-LINE | (2) OTHER | (1) XRN.ip |
| TACTTAGTATCTTACATGCTTTGATAAAATAACCAGTAATTTTCTTGAGTTGCATGTAAAATAGAGCCACTTAACTTTTTTTTTTTTGCCTTATGGTGAAAAGCCAGATAAAATATATTTTTCATAAAATACTTTTCTATTAATTACTTATGTGAAAATTAATGTTGAAGTAATAAACATGGATATTTTGTGTTAAATAGGATTTAAATAGTCGGGCACAAGGTGAAGTTACAATCAGAGAAGCTTTACG .................................................................................(((((..((....))..)))))................................................................................................................................................... ..............................................................63.......................................................120................................................................................................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189784 | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | TAX577580(Rovira) total RNA. (breast) | GSM450609(GSM450609) miRNA sequencing raw reads from post-mortem s. (brain) | SRR553573(SRX182779) source: Cerebellum. (Cerebellum) | SRR189785 | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR033729(GSM497074) splenic MZL (Splenic414). (B cell) | SRR189782 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................CACTTAACTTTTTTTTTTTTAG................................................................................................................................................................. | 22 | 236.00 | 0.00 | 116.00 | 70.00 | 30.00 | 20.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................CACTTAACTTTTTTTTTTTAG.................................................................................................................................................................. | 21 | 220.00 | 0.00 | 107.00 | 73.00 | 20.00 | 19.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................CACTTAACTTTTTTTTTTAG................................................................................................................................................................... | 20 | 168.00 | 0.00 | 87.00 | 48.00 | 20.00 | 11.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................CACTTAACTTTTTTTTTAG.................................................................................................................................................................... | 19 | 137.00 | 0.00 | 56.00 | 38.00 | 29.00 | 13.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................CACTTAACTTTTTTTTAG..................................................................................................................................................................... | 18 | 45.00 | 0.00 | 15.00 | 17.00 | 8.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................CACTTAACTTTTTTTTTTTTAT................................................................................................................................................................. | 22 | 20.00 | 0.00 | 11.00 | 8.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................CACTTAACTTTTTTTTTTTTAAG................................................................................................................................................................ | 23 | 18.00 | 0.00 | 9.00 | 4.00 | 4.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................CACTTAACTTTTTTTTTTTTG.................................................................................................................................................................. | 21 | 2 | 11.00 | 11.00 | 6.00 | 1.00 | 1.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................CACTTAACTTTTTTTTTTTAAG................................................................................................................................................................. | 22 | 10.00 | 0.00 | 7.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................CACTTAACTTTTTTTTTTAAG.................................................................................................................................................................. | 21 | 9.00 | 0.00 | 4.00 | 3.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................ACTTAACTTTTTTTTTTTAG.................................................................................................................................................................. | 20 | 9.00 | 0.00 | 6.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................ACTTAACTTTTTTTTTTTTG.................................................................................................................................................................. | 20 | 8 | 8.00 | 8.00 | 3.38 | 2.50 | 1.12 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................CCACTTAACTTTTTTTTTTTTTTTG............................................................................................................................................................... | 25 | 8.00 | 0.00 | 1.00 | 2.00 | 4.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................CACTTAACTTTTTTTTTTTTCTAG............................................................................................................................................................... | 24 | 6.00 | 0.00 | - | - | 4.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................CACTTAACTTTTTTTTTAT.................................................................................................................................................................... | 19 | 6.00 | 0.00 | 5.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................ACTTAACTTTTTTTTTAG.................................................................................................................................................................... | 18 | 5.00 | 0.00 | 2.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................CTTAACTTTTTTTTTTTAAAG................................................................................................................................................................ | 21 | 5.00 | 0.00 | 3.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................................................GTCGGGCACAAGGTGAAG...................... | 18 | 1 | 4.00 | 4.00 | - | - | - | - | - | - | 4.00 | - | - | - | - | - | - | - | - | - |
| ..................................................................CCACTTAACTTTTTTTTTTTTG.................................................................................................................................................................. | 22 | 1 | 4.00 | 4.00 | 3.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................CACTTAACTTTTTTTTTTCAG.................................................................................................................................................................. | 21 | 4.00 | 0.00 | - | - | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................CACTTAACTTTTTTTTTTAT................................................................................................................................................................... | 20 | 4.00 | 0.00 | 1.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................CCACTTAACTTTTTTTTTTG.................................................................................................................................................................... | 20 | 3.00 | 0.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................CCACTTAACTTTTTTTTTTTTTTG................................................................................................................................................................ | 24 | 2.00 | 0.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................CACTTAACTTTTTTTTTTTGG.................................................................................................................................................................. | 21 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................CACTTAACTTTTTTTTTTTTCAG................................................................................................................................................................ | 23 | 2.00 | 0.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................CACTTAACTTTTTTTTTTTTAGG................................................................................................................................................................ | 23 | 2.00 | 0.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................CACTTAACTTTTTTTTTTCCAG................................................................................................................................................................. | 22 | 2.00 | 0.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................CACTTAACTTTTTTTTCTAG................................................................................................................................................................... | 20 | 2.00 | 0.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................CACTTAACTTTTTTTTTAAG................................................................................................................................................................... | 20 | 2.00 | 0.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................ACTTAACTTTTTTTTTTTTCAG................................................................................................................................................................ | 22 | 2.00 | 0.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................CACTTAACTTTTTTTTTTTAA.................................................................................................................................................................. | 21 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................CACTTAACTTTTTTTTTTCTAG................................................................................................................................................................. | 22 | 2.00 | 0.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................TGAAAAGCCAGATAAATAAG...................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................CCACTTAACTTTTTTTTTTTTAG................................................................................................................................................................. | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................CACTTAACTTTTTTTCTAG.................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................CTTTTTTTTTTTTGCCTGGCG........................................................................................................................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ...................................................................CACTTAACTTTTTTTTTTGTGG................................................................................................................................................................. | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................CACTTAACTTTTTTTTTTGG................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................TATATTTTTCATAAAACAAA..................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................TTTAAATAGTCGGGCACAAGGTGAAG...................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................TCGGGCACAAGGTGAAGTTACA................. | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ................................................................................................................................................................................................................TAGTCGGGCACAAGGTGAAGTTA................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ...................................................................CACTTAACTTTTTTTTTTTATAG................................................................................................................................................................ | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................CACTTAACTTTTTTTTCTTG................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................ACTTTTTTTTTTTTGCGCC.............................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ...................................................................CACTTAACTTTTTTTTTTTCTAG................................................................................................................................................................ | 23 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................TAGTCGGGCACAAGGTGAAGTTACAATCAGAGA......... | 33 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..................................................................CCACTTAACTTTTTTTTTTTTTAG................................................................................................................................................................ | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................CTTAACTTTTTTTTTTTTCATT............................................................................................................................................................... | 22 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................CATAAAATACTTTTCTAT.............................................................................................................. | 18 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................TAACTTTTTTTTTTTTGCCTCTGG........................................................................................................................................................... | 24 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| ...................................................................CACTTAACTTTTTTTTTTTAGG................................................................................................................................................................. | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................CACTTAACTTTTTTTCAG..................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................CACTTAACTTTTTTTTTTTTCTTG............................................................................................................................................................... | 24 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................CCACTTAACTTTTTTTTTTCTT.................................................................................................................................................................. | 22 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................GATTTAAATAGTCGGGCACAAGGT.......................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ...................................................................CACTTAACTTTTTTTTTTATTG................................................................................................................................................................. | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................CACTTAACTTTTTTTTTTTTCCAG............................................................................................................................................................... | 24 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................................................GTCGGGCACAAGGTGAAGTTACAATCA............. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..................................................................CCACTTAACTTTTTTTTTTTTTTAG............................................................................................................................................................... | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................CTTAACTTTTTTTTTTTTGTT................................................................................................................................................................ | 21 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................ACTTAACTTTTTTTTTTTTCG................................................................................................................................................................. | 21 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................CTTTTTTTTTTTTGCCGCGC............................................................................................................................................................ | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ...................................................................CACTTAACTTTTTTTTTTTTGAG................................................................................................................................................................ | 23 | 2 | 0.50 | 11.00 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................ACTTAACTTTTTTTTTTTTGTG................................................................................................................................................................ | 22 | 8 | 0.12 | 8.00 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TACTTAGTATCTTACATGCTTTGATAAAATAACCAGTAATTTTCTTGAGTTGCATGTAAAATAGAGCCACTTAACTTTTTTTTTTTTGCCTTATGGTGAAAAGCCAGATAAAATATATTTTTCATAAAATACTTTTCTATTAATTACTTATGTGAAAATTAATGTTGAAGTAATAAACATGGATATTTTGTGTTAAATAGGATTTAAATAGTCGGGCACAAGGTGAAGTTACAATCAGAGAAGCTTTACG .................................................................................(((((..((....))..)))))................................................................................................................................................... ..............................................................63.......................................................120................................................................................................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189784 | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | TAX577580(Rovira) total RNA. (breast) | GSM450609(GSM450609) miRNA sequencing raw reads from post-mortem s. (brain) | SRR553573(SRX182779) source: Cerebellum. (Cerebellum) | SRR189785 | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR033729(GSM497074) splenic MZL (Splenic414). (B cell) | SRR189782 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................................................................................................................................................TATGTGAAAATTAATTCTG................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................GAAAATTAATGTTGACTT............................................................................... | 18 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................ATTAATGTTGAAGTAAAG........................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| .....................................................................................................AATATATTTTATCTGGCT................................................................................................................................... | 18 | 5 | 0.20 | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.20 |