uc001phn.1_intron_23_0_chr11_103025539

TTGTGTGTGTCCATGGCAACATTTAATCAAAAGCTTTATACAATTCTGTTTAAGAATATGATTTTAAGATTATTAAACAAGAAAATGGAATAATTAAAATTTTGGTAACTAATAAGCATAAAAGTAAATACTAATTTGCATTTTGCTAATATATGTATATGTGTATACATATGACTTTTTCTTTTTTTTTTTTGTAACAGATCGTAATTCCTATCTTGAAATATGTGAGAGGGGAGCATCTTTCTCCAGA ............................................................................(((((((((.((((........................((((.(((.((((((....)))))).)))))))..((((((((((....)))))))))).....))))....)))))))))....................................................... .......................................................................72..............................................................................................................................200................................................	Size	Perfect hit	Total Norm	Perfect Norm	SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR189782	SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR324841(SRX087285) "Total RNA, no rRNA depletion". (cell line)	SRR033722(GSM497067) KMS12 cell line (KMS12). (B cell)	SRR189787	SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189784
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTGGC......................................................	23		3.00	0.00	2.00	1.00	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTAG.......................................................	22		3.00	0.00	-	-	1.00	-	1.00	-	1.00	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTACAG......................................................	23		3.00	0.00	3.00	-	-	-	-	-	-	-	-	-	-	-
..................................................................................................................................................................................................TAACAGATCGTAATTATTG.....................................	19		3.00	0.00	-	-	-	3.00	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTACAG.....................................................	24		3.00	0.00	1.00	2.00	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTGGGGG....................................................	25		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTGTAGAG...................................................	26		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTGGCC......................................................	23		2.00	0.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTGGG.......................................................	22		2.00	0.00	-	2.00	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTCTTG.....................................................	24		2.00	0.00	1.00	-	1.00	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTACT.......................................................	22		2.00	0.00	-	-	-	-	-	1.00	-	-	-	-	1.00	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTCCAG.....................................................	24		2.00	0.00	1.00	-	-	-	-	-	1.00	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTGCCC......................................................	23		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTAATG......................................................	23		1.00	0.00	-	-	-	-	-	1.00	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTCTCG.....................................................	24		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-
...........................................................................................................................................................................TGACTTTTTCTTTTTTTTTTTTGTA......................................................	25	1	1.00	1.00	-	1.00	-	-	-	-	-	-	-	-	-	-
..............................................................................................................................................................................CTTTTTCTTTTTTTTTTTTGTCGTG...................................................	25		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.................................................................................................................................................................................TTTCTTTTTTTTTTTTGTAACCCC.................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTGAGGA....................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTGGTTG....................................................	25		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTGATG......................................................	23		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
...............................................................................................................................................................................TTTTTCTTTTTTTTTTTTGTCGCC...................................................	24		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTATG......................................................	23		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-
..............................................................................................................................................................................CTTTTTCTTTTTTTTTTTTGGATC....................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................................................................................TCTTTTTTTTTTTTGTACAGG..................................................	21		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTGGAT.....................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTCTGG.....................................................	24		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................TGACTTTTTCTTTTTTTTTTTTAACT.....................................................	26		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
............................................................................ACAAGAAAATGGAATTCT............................................................................................................................................................	18		1.00	0.00	-	-	-	-	-	-	-	-	1.00	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTGAGG.....................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
..................................................................................................................................................................................TTCTTTTTTTTTTTTGTACAGG..................................................	22		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
...............................................................................................................................................................................TTTTTCTTTTTTTTTTTTGTCGTG...................................................	24		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
...................................................................................................................................................................TATACATATGACTTTTTCTCTTT................................................................	23		1.00	0.00	-	-	-	-	-	1.00	-	-	-	-	-	-
...................................................................................................................................................................................TCTTTTTTTTTTTTGTAAACTA.................................................	22		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.................................................................................................................................................................................TTTCTTTTTTTTTTTTGTACAGG..................................................	23		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................TGACTTTTTCTTTTTTTTTTTCCTG......................................................	25		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
......................................................................................................................................................................................TTTTTTTTTTTGTAACCCGG................................................	20		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTAAAT.....................................................	24		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTGCTG.....................................................	24		1.00	0.00	-	-	-	-	-	1.00	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTGGCC.....................................................	24		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTGGAA......................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................ATGACTTTTTCTTTTTTTTTTTTGAG......................................................	26		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTATTG.....................................................	24		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTCAGC.....................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTGTG.......................................................	22		1.00	0.00	-	-	-	-	-	-	1.00	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTGGACA....................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTAAAG......................................................	23		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTATAG.....................................................	24		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-
..............................................................................................................................................................................CTTTTTCTTTTTTTTTTTTGCTTT....................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTCTGA.....................................................	24		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................TGACTTTTTCTTTTTTTTTTTTCAGG.....................................................	26		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................TGACTTTTTCTTTTTTTTTTTTAAG......................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTGCACC....................................................	25		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTGTAGGAT..................................................	27		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTAACT.....................................................	24		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTGGTG.....................................................	24		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTACC......................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTCAG......................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTGGTAG....................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................TGACTTTTTCTTTTTTTTTTTTG........................................................	23	3	0.67	0.67	-	0.67	-	-	-	-	-	-	-	-	-	-
..................................................................................................................................................................................TTCTTTTTTTTTTTTGTAACTGGC................................................	24	9	0.11	0.11	0.11	-	-	-	-	-	-	-	-	-	-	-
..................................................................................................................................................................................TTCTTTTTTTTTTTTGTAAC....................................................	20	9	0.11	0.11	-	-	-	-	-	-	-	-	-	-	-	0.11
..................................................................................................................................................................................TTCTTTTTTTTTTTTGTAACCTTT................................................	24	9	0.11	0.11	-	0.11	-	-	-	-	-	-	-	-	-	-

TTGTGTGTGTCCATGGCAACATTTAATCAAAAGCTTTATACAATTCTGTTTAAGAATATGATTTTAAGATTATTAAACAAGAAAATGGAATAATTAAAATTTTGGTAACTAATAAGCATAAAAGTAAATACTAATTTGCATTTTGCTAATATATGTATATGTGTATACATATGACTTTTTCTTTTTTTTTTTTGTAACAGATCGTAATTCCTATCTTGAAATATGTGAGAGGGGAGCATCTTTCTCCAGA
............................................................................(((((((((.((((........................((((.(((.((((((....)))))).)))))))..((((((((((....)))))))))).....))))....))))))))).......................................................
.......................................................................72..............................................................................................................................200................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189782

SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)

SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)

SRR189787

SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189784

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTGGC......................................................

3.00

0.00

2.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTAG.......................................................

3.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTACAG......................................................

3.00

0.00

3.00

..................................................................................................................................................................................................TAACAGATCGTAATTATTG.....................................

3.00

0.00

3.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTACAG.....................................................

3.00

0.00

1.00

2.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTGGGGG....................................................

2.00

0.00

2.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTGTAGAG...................................................

2.00

0.00

2.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTGGCC......................................................

2.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTGGG.......................................................

2.00

0.00

2.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTCTTG.....................................................

2.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTACT.......................................................

2.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTCCAG.....................................................

2.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTGCCC......................................................

2.00

0.00

2.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTAATG......................................................

1.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTCTCG.....................................................

1.00

0.00

1.00

...........................................................................................................................................................................TGACTTTTTCTTTTTTTTTTTTGTA......................................................

1.00

..............................................................................................................................................................................CTTTTTCTTTTTTTTTTTTGTCGTG...................................................

1.00

0.00

1.00

.................................................................................................................................................................................TTTCTTTTTTTTTTTTGTAACCCC.................................................

1.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTGAGGA....................................................

1.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTGGTTG....................................................

1.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTGATG......................................................

1.00

0.00

1.00

...............................................................................................................................................................................TTTTTCTTTTTTTTTTTTGTCGCC...................................................

1.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTATG......................................................

1.00

0.00

1.00

..............................................................................................................................................................................CTTTTTCTTTTTTTTTTTTGGATC....................................................

1.00

0.00

1.00

...................................................................................................................................................................................TCTTTTTTTTTTTTGTACAGG..................................................

1.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTGGAT.....................................................

1.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTCTGG.....................................................

1.00

0.00

1.00

...........................................................................................................................................................................TGACTTTTTCTTTTTTTTTTTTAACT.....................................................

1.00

0.00

1.00

............................................................................ACAAGAAAATGGAATTCT............................................................................................................................................................

1.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTGAGG.....................................................

1.00

0.00

1.00

..................................................................................................................................................................................TTCTTTTTTTTTTTTGTACAGG..................................................

1.00

0.00

1.00

...............................................................................................................................................................................TTTTTCTTTTTTTTTTTTGTCGTG...................................................

1.00

0.00

1.00

...................................................................................................................................................................TATACATATGACTTTTTCTCTTT................................................................

1.00

0.00

1.00

...................................................................................................................................................................................TCTTTTTTTTTTTTGTAAACTA.................................................

1.00

0.00

1.00

.................................................................................................................................................................................TTTCTTTTTTTTTTTTGTACAGG..................................................

1.00

0.00

1.00

...........................................................................................................................................................................TGACTTTTTCTTTTTTTTTTTCCTG......................................................

1.00

0.00

1.00

......................................................................................................................................................................................TTTTTTTTTTTGTAACCCGG................................................

1.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTAAAT.....................................................

1.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTGCTG.....................................................

1.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTGGCC.....................................................

1.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTGGAA......................................................

1.00

0.00

1.00

..........................................................................................................................................................................ATGACTTTTTCTTTTTTTTTTTTGAG......................................................

1.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTATTG.....................................................

1.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTCAGC.....................................................

1.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTGTG.......................................................

1.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTGGACA....................................................

1.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTAAAG......................................................

1.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTATAG.....................................................

1.00

0.00

1.00

..............................................................................................................................................................................CTTTTTCTTTTTTTTTTTTGCTTT....................................................

1.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTCTGA.....................................................

1.00

0.00

1.00

...........................................................................................................................................................................TGACTTTTTCTTTTTTTTTTTTCAGG.....................................................

1.00

0.00

1.00

...........................................................................................................................................................................TGACTTTTTCTTTTTTTTTTTTAAG......................................................

1.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTGCACC....................................................

1.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTGTAGGAT..................................................

1.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTAACT.....................................................

1.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTGGTG.....................................................

1.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTACC......................................................

1.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTCAG......................................................

1.00

0.00

1.00

.............................................................................................................................................................................ACTTTTTCTTTTTTTTTTTTGGTAG....................................................

1.00

0.00

1.00

...........................................................................................................................................................................TGACTTTTTCTTTTTTTTTTTTG........................................................

0.67

..................................................................................................................................................................................TTCTTTTTTTTTTTTGTAACTGGC................................................

0.11

..................................................................................................................................................................................TTCTTTTTTTTTTTTGTAAC....................................................

0.11

..................................................................................................................................................................................TTCTTTTTTTTTTTTGTAACCTTT................................................

0.11