ID: uc001phk.2_intron_0_0_chr11_102733932_r.3p
GENE: (10)
chr11:102733882-102734131-


(3)
BREAST
(10)
CELL-LINE
(1)
CERVIX
(1)
HELA
(2)
LIVER
(1)
OTHER
(3)
SKIN

Sense strand
TGATGGCCAGGCTGATCTCAAACTCCTGGCCTCAAGCAGTCTTCCCATCTCAGCCTCTCAAAGTGTGTAGTTAAGGGCATGAACCACAGCCCATAGGTCATCTATTCTAGATAATCTATGAGAAGAGATTTGTGTTGTTGTTGTTGTTGTAAAGAAATACAGGGAGGGAATTAAACTATTTAATTTGTTTTCATTTTCAGAATACTACTATTTCTTCCAAGGATCTAACCAATTTGAATATGACTTCCTA
.....................................................................................................................(((((((.(((((...(((....((.((.(((((......))))).)).)).....))).....))))).)))))))........................................................
.....................................................................................................................118.......................................................................................208........................................
SizePerfect hitTotal NormPerfect NormSRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR040009(GSM532894)
G727T. (cervix)
SRR189785SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
..........................................................................................................................AAGAGATTTGTGTTGCTTC.............................................................................................................1912.000.008.00-1.00-1.002.00----------------
........................................................................................................................AGAAGAGATTTGTGTTGCTT..............................................................................................................2012.000.0010.00-2.00-------------------
.........................................................................................................................GAAGAGATTTGTGTTGCT...............................................................................................................1810.000.004.002.00----3.00--1.00------------
.........................................................................................................................GAAGAGATTTGTGTTGCTT..............................................................................................................198.000.005.001.00--2.00-----------------
..........................................................................................................................AAGAGATTTGTGTTGCTT..............................................................................................................187.000.005.002.00--------------------
........................................................................................................................AGAAGAGATTTGTGTTGCTTC.............................................................................................................214.000.004.00---------------------
......................................................................................................................................TTGTTGTTGTTGTTGTAAA.................................................................................................1902.002.00--------2.00-------------
..........................................................................................................................AAGAGATTTGTGTTGCTTT.............................................................................................................191.000.001.00---------------------
....GGCCAGGCTGATCTCAAAACCT................................................................................................................................................................................................................................221.000.00-----------1.00----------
........................................................................................................................AGAAGAGATTTGTGTTGCT...............................................................................................................191.000.00--1.00-------------------
........................................................................................................................AGAAGAGATTTGTGTTGCTTT.............................................................................................................211.000.00----1.00-----------------
..........................................................................................................................AAGAGATTTGTGTTGTTTCT............................................................................................................201.000.00---------1.00------------
.........................................................................................................................GAAGAGATTTGTGTTGC................................................................................................................171.000.00-1.00--------------------
.........................................................................................................................GAAGAGATTTGTGTTGATT..............................................................................................................191.000.00----1.00-----------------
..........................................................................................................................................................................................GTTTTCATTTTCAGAACG..............................................181.000.00------------1.00---------
..........................................................................................................................AAGAGATTTGTGTTGCTTG.............................................................................................................191.000.00--1.00-------------------
........................................................................................................................AGAAGAGATTTGTGTTGCAA..............................................................................................................201.000.001.00---------------------
.........................................................................................................................................................................ATTAAACTATTTAATCTG...............................................................181.000.00----------------1.00-----
.............................CCTCAAGCAGTCTTC..............................................................................................................................................................................................................1501.001.00-------1.00--------------
..........................................................................................................................................................................TTAAACTATTTAATTTGTT.............................................................1940.500.50----------0.50-----------

Antisense strand
TGATGGCCAGGCTGATCTCAAACTCCTGGCCTCAAGCAGTCTTCCCATCTCAGCCTCTCAAAGTGTGTAGTTAAGGGCATGAACCACAGCCCATAGGTCATCTATTCTAGATAATCTATGAGAAGAGATTTGTGTTGTTGTTGTTGTTGTAAAGAAATACAGGGAGGGAATTAAACTATTTAATTTGTTTTCATTTTCAGAATACTACTATTTCTTCCAAGGATCTAACCAATTTGAATATGACTTCCTA
.....................................................................................................................(((((((.(((((...(((....((.((.(((((......))))).)).)).....))).....))))).)))))))........................................................
.....................................................................................................................118.......................................................................................208........................................
SizePerfect hitTotal NormPerfect NormSRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR040009(GSM532894)
G727T. (cervix)
SRR189785SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
.........GGCTGATCTCAAACTCCTGGAC........................................................................................................................................................................................................................... 223.000.00---3.00------------------
.......CAGGCTGATCTCAAACCGCC............................................................................................................................................................................................................................... 201.000.00---------------1.00------
.......CAGGCTGATCTCAAACTCCCA.............................................................................................................................................................................................................................. 211.000.00------------------1.00---
.........................CTGGCCTCAAGCAGTCTTCCCATG......................................................................................................................................................................................................... 241.000.00---1.00------------------
............................................CCATCTCAGCCTCTCAAAA........................................................................................................................................................................................... 191.000.00-------------------1.00--
.......................................TCTTCCCATCTCAGCCTCTCAATGCT......................................................................................................................................................................................... 261.000.00--------------------1.00-
...............................................ACTTTGAGAGGCTGAGA.......................................................................................................................................................................................... 1701.001.00-------1.00--------------
..............................................ATCTCAGCCTCTCAACGGC......................................................................................................................................................................................... 191.000.00-------------1.00--------
..........................................................................................................................................................................................GTTTTCATTTTCAGAGGC.............................................. 181.000.00-----------------1.00----
....GGCCAGGCTGATCTCAAACTCGGCG............................................................................................................................................................................................................................. 251.000.00-----1.00----------------
.....GCCAGGCTGATCTCAAACTCCTAGAT........................................................................................................................................................................................................................... 261.000.00--------------1.00-------
..........GCTGATCTCAAACTCCTGGCCTGGGG...................................................................................................................................................................................................................... 261.000.00---1.00------------------
....AGTTTGAGATCAGCCTGGCC.................................................................................................................................................................................................................................. 2001.001.00---------------------1.00
.............................................................................................................................................TGTTGTTGTAAAGAAACC........................................................................................... 181.000.00----------1.00-----------
........................AGATGGGAAGACTGCTTGAGGCCAGG........................................................................................................................................................................................................ 2640.250.25-----------0.25----------