ID: uc001pbx.1_intron_1_0_chr11_86097155_f.3p
GENE: (2)
chr11:86098358-86098607+


(1)
BREAST
(5)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(1)
LIVER
(5)
OTHER
(1)
RRP40.ip
(1)
XRN.ip

Sense strand
GACCAATGTATTACATTTTATACTAAGCTTATTTGAAAACTTAGAATTATAAAATGCTATAGCTCTGAAGAGTCCTAGAGATCACTGAATTTTTAAGGCCTAAGCTTACTTCTCTTCGTGTTTTTTAGATAATAATATTAAGGATTATTTTTTCTTCACTCCTTCAATGAATTCTGTTTTGTTTTGTTTTTTCCTTTCAGGGGGTTCAGATTCCAGCATTTGGAACTTTCACTTTCATAAGACAAAAGCT

.................................................................................................................................................146...................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189785TAX577738(Rovira)
total RNA. (breast)
SRR189786SRR189784SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR040024(GSM532909)
G613N. (cervix)
SRR343336
...........................................................................................................................................................................TTCTGTTTTGTTTTGTTTTTTCCTTTG....................................................27122.0015.0013.006.003.00------------
...........................................................................................................................................................................TTCTGTTTTGTTTTGTTTTTTCCTTT.....................................................26115.0015.0010.004.001.00------------
...........................................................................................................................................................................TTCTGTTTTGTTTTGTTTTTTCCTTTGTTG.................................................30113.0015.004.005.004.00------------
............................................................................................................................................................................TCTGTTTTGTTTTGTTTTTTCCTTTGTTG.................................................29111.005.005.005.001.00------------
............................................................................................................................................................................TCTGTTTTGTTTTGTTTTTTCCTTTG....................................................2616.005.003.003.00-------------
......................................................................................................................................................TTTCTTCACTCCTTCTATC.................................................................................196.000.00---4.002.00----------
...........................................................................................................................................................................TTCTGTTTTGTTTTGTTTTTTGGTC......................................................255.000.003.002.00-------------
............................................................................................................................................................................TCTGTTTTGTTTTGTTTTTTCCTTT.....................................................2515.005.003.002.00-------------
..........................................................................................................................................................................ATTCTGTTTTGTTTTGTTTTCGG.........................................................234.000.00-4.00-------------
..............................................................................................................................................................................TGTTTTGTTTTGTTTTTTCCTTTGCTG.................................................273.000.001.002.00-------------
...............................................................................................................................................................................GTTTTGTTTTGTTTTTTCCTTTGTC..................................................253.000.003.00--------------
..........................................................................................................................................................................ATTCTGTTTTGTTTTGTTTTTTTGTA......................................................263.000.001.002.00-------------
..............................................................................................................................................................................TGTTTTGTTTTGTTTTTTCCTTTGTCG.................................................273.000.001.002.00-------------
......................................................................................................................................................TTTCTTCACTCCTTCTTTT.................................................................................193.000.00---3.00-----------
...........................................................................................................................................................................TTCTGTTTTGTTTTGTTTTTTCTC.......................................................242.000.001.001.00-------------
..........................................................................................................................................................................ATTCTGTTTTGTTTTGTTTCTTT.........................................................232.000.00-2.00-------------
................................................................................................................................................................................TTTTGTTTTGTTTTTTCCTTTGCTG.................................................252.000.00-2.00-------------
..............................................................................................................................................................................TGTTTTGTTTTGTTTTTTCCTTTGTC..................................................262.000.002.00--------------
.........................................................................................................................................................................AATTCTGTTTTGTTTTGTTTTTGGTT.......................................................262.000.002.00--------------
..............................................................................................................................................................................TGTTTTGTTTTGTTTTTTCGGTC.....................................................232.000.00-----2.00---------
...........................................................................................................................................................................TTCTGTTTTGTTTTGTTTTTAAGC.......................................................242.000.002.00--------------
.............................................................................................................................................................................CTGTTTTGTTTTGTTTTTTCCTTTG....................................................2512.001.002.00--------------
................................................................................................................................................................................TTTTGTTTTGTTTTTTCCTTTGTCG.................................................252.000.002.00--------------
............................................................................................................................................................................TCTGTTTTGTTTTGTTTTTTCCTTTGTT..................................................2812.005.001.001.00-------------
..........................................................................................................................................................................ATTCTGTTTTGTTTTGTTTTTAAG........................................................242.000.00-2.00-------------
...........................................................................................................................................................................TTCTGTTTTGTTTTGTTTTTTCTTGC.....................................................262.000.002.00--------------
............................................................................................................................................................................TCTGTTTTGTTTTGTTTTTTCCTTAGTT..................................................282.000.002.00--------------
......................................................................................................................................................TTTCTTCACTCCTTCTGTC.................................................................................192.000.00--------1.00-1.00----
...........................................................................................................................................................................TTCTGTTTTGTTTTGTTTTTTCTCT......................................................252.000.00-2.00-------------
...........................................................................................................................................................................TTCTGTTTTGTTTTGTTTTTTGGTG......................................................251.000.001.00--------------
......................................................................................................................................................TTTCTTCACTCCTTCTGTT.................................................................................191.000.00----1.00----------
............................................................................................................................................................................TCTGTTTTGTTTTGTTTTTTGGTG......................................................241.000.00-1.00-------------
...........................................................................................................................................................................TTCTGTTTTGTTTTGTTTTTTCCCTTG....................................................2741.000.500.500.250.25------------
...................................................................................................................................................................................TGTTTTGTTTTTTCCGTCC....................................................191.000.001.00--------------
.............................................................................................................................................................................CTGTTTTGTTTTGTTTTTTCCTTT.....................................................2411.001.00-1.00-------------
................................................................................................................................................................................TTTTGTTTTGTTTTTTCCTTTGTAC.................................................251.000.00-1.00-------------
..........................................................................................................................................................................ATTCTGTTTTGTTTTGTTTTTAGG........................................................241.000.00-1.00-------------
...........................................................................................................................................................................TTCTGTTTTGTTTTGTTTTTTCCTTTGCT..................................................2911.0015.001.00--------------
................................................................................................................................................................................TTTTGTTTTGTTTTTTCCTTCGTT..................................................241.000.00-1.00-------------
..........................................................................................................................................................................ATTCTGTTTTGTTTTGTTTTCGGA........................................................241.000.00-1.00-------------
...........................................................................................................................................................................TTCTGTTTTGTTTTGTTTTTTCTG.......................................................241.000.00-1.00-------------
..............................................................................................................................................................................TGTTTTGTTTTGTTTTTTCCTTTGCT..................................................261.000.001.00--------------
..........................................................................................................................................................................ATTCTGTTTTGTTTTGTTTTTTTGG.......................................................251.000.001.00--------------
.............................................................................................................................................................................CTGTTTTGTTTTGTTTTTTCCTTTGTTG.................................................2811.001.001.00--------------
................................................................................................................................................................................TTTTGTTTTGTTTTTTCCTTGGCC..................................................241.000.00-1.00-------------
............................................................................................................................................................................TCTGTTTTGTTTTGTTTTTTGGTC......................................................241.000.00-1.00-------------
..................................................................................................................................................................................TTGTTTTGTTTTTTCCTTTGCTG.................................................231.000.00-1.00-------------
................................................................................................................................................................................TTTTGTTTTGTTTTTTCCTTTGCCG.................................................251.000.001.00--------------
...............................................................................................................................................................................GTTTTGTTTTGTTTTTTCCTTTGTA..................................................251.000.00-1.00-------------
..............................................................................................................................................................................TGTTTTGTTTTGTTTTTTCCTTGTTG..................................................261.000.00-1.00-------------
..........................................................................................................................................................................ATTCTGTTTTGTTTTGTTTTTTTGT.......................................................251.000.00-1.00-------------
.............................................................................................................................................................................CTGTTTTGTTTTGTTTTTTCGG.......................................................221.000.001.00--------------
...........................................................................................................................................................................TTCTGTTTTGTTTTGTTTTTTCGAG......................................................251.000.001.00--------------
..........................................................................................................................................................................................................................................TCATAAGACAAAAGCGGCG191.000.00------------1.00--
......................................................................................................................................................TTTCTTCACTCCTTCTATT.................................................................................191.000.00---1.00-----------
.................................................................................................................................................................................TTTGTTTTGTTTTTTCCTTTGCT..................................................231.000.001.00--------------
.........................................................................................................................................................................AATTCTGTTTTGTTTTGTTTTTCGGG.......................................................261.000.00-1.00-------------
..........................................................................................................................................................................ATTCTGTTTTGTTTTGTTTTTAATG.......................................................251.000.001.00--------------
...........................................................................................................................................................................TTCTGTTTTGTTTTGTTTTTTGTTC......................................................251.000.001.00--------------
.....................................................................................................................................................TTTTCTTCACTCCTTATG...................................................................................181.000.00---1.00-----------
.................................................................................................................................................................................TTTGTTTTGTTTTTTCCTTTGCTG.................................................241.000.001.00--------------
.................................................................................................................................................................................TTTGTTTTGTTTTTTCCTTTCGTT.................................................241.000.00-1.00-------------
...............................................................................................................................................................................GTTTTGTTTTGTTTTTTCCTTTGTCG.................................................261.000.00--1.00------------
............................................................................................................................................................................TCTGTTTTGTTTTGTTTTTTCCTCTG....................................................261.000.00-1.00-------------
............................................................................................................................................................................TCTGTTTTGTTTTGTTTTTTGGGA......................................................241.000.001.00--------------
.................................................................................................................................................................................TTTGTTTTGTTTTTTCCTTTGTCG.................................................241.000.00-1.00-------------
..................................................................................................................................................................................TTGTTTTGTTTTTTCCTTGTTT..................................................221.000.001.00--------------
......................................................................................................................................................TTTCTTCACTCCTTCTGCT.................................................................................191.000.00---1.00-----------
............................................................................................................................................................................TCTGTTTTGTTTTGTTTTTTCCTTTGTC..................................................2811.005.00-1.00-------------
............................................................................................................................................................................TCTGTTTTGTTTTGTTTTTTCGAC......................................................241.000.001.00--------------
................................................................................................................................................................................TTTTGTTTTGTTTTTTCCTTTCAGGGGGTCCAG.........................................331.000.00-1.00-------------
.............................................................................................................................................................................CTGTTTTGTTTTGTTTTTTGGTG......................................................231.000.001.00--------------
................................................................................................................................................................................TTTTGTTTTGTTTTTTCGGC......................................................201.000.001.00--------------
...........................................................................................................................................................................TTCTGTTTTGTTTTGTTTTTTCGTC......................................................251.000.00-1.00-------------
......................................................................................................................................................TTTCTTCACTCCTTCTTTA.................................................................................191.000.00---1.00-----------
............................................................................................................................................................................TCTGTTTTGTTTTGTTTTTTCCTTTGT...................................................2711.005.00-1.00-------------
...........................................................................................................................................................................TTCTGTTTTGTTTTGTTACTT..........................................................211.000.00-1.00-------------
............................................................................................................................................................................TCTGTTTTGTTTTGTTTTTTGGGT......................................................241.000.00-1.00-------------
............................................................................................................................................................................TCTGTTTTGTTTTGTTTTTTGATG......................................................241.000.00-1.00-------------
...........................................................................................................................................................................................................GTTCAGATTCCAGCAAATA............................191.000.00-------1.00-------
...........................................................................................................................................................................TTCTGTTTTGTTTTGTTTTTTCCTCTG....................................................2731.000.330.330.330.33------------
..............................................................................................................................................................................TGTTTTGTTTTGTTTTTTCCTGGGG...................................................251.000.00-1.00-------------
..............................................................................................................................................................................TGTTTTGTTTTGTTTTTTCCTTCGTT..................................................261.000.00-1.00-------------
...........................................................................................................................................................................TTCTGTTTTGTTTTGTTTTTTCCTTTGTT..................................................2911.0015.00-1.00-------------
................................................................................................................................................................................TTTTGTTTTGTTTTTTCGAGG.....................................................211.000.001.00--------------
...........................................................................................................................................................................TTCTGTTTTGTTTTGTTTTTTCC........................................................2340.500.50-0.50-------------
............................................................................................................................................................................TCTGTTTTGTTTTGTTTTTTCC........................................................2250.400.400.200.20-------------
...........................................................................................................................................................................TTCTGTTTTGTTTTGTTTTTTCCT.......................................................2430.330.33-0.33-------------
................................................................................................................................................................................TTTTGTTTTGTTTTTTCCTTTC....................................................2230.330.330.33--------------
...........................................................................................................................................................................TTCTGTTTTGTTTTGTTTTTTCCCTT.....................................................2640.250.500.25--------------
...........................................................................................................................................................................TTCTGTTTTGTTTTGTTTTTTCCC.......................................................2440.250.50-0.25-------------
...........................................................................................................................................................................TTCTGTTTTGTTTTGTTTTTTCCATT.....................................................2640.250.50-0.25-------------

Antisense strand
GACCAATGTATTACATTTTATACTAAGCTTATTTGAAAACTTAGAATTATAAAATGCTATAGCTCTGAAGAGTCCTAGAGATCACTGAATTTTTAAGGCCTAAGCTTACTTCTCTTCGTGTTTTTTAGATAATAATATTAAGGATTATTTTTTCTTCACTCCTTCAATGAATTCTGTTTTGTTTTGTTTTTTCCTTTCAGGGGGTTCAGATTCCAGCATTTGGAACTTTCACTTTCATAAGACAAAAGCT

.................................................................................................................................................146...................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189785TAX577738(Rovira)
total RNA. (breast)
SRR189786SRR189784SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR040024(GSM532909)
G613N. (cervix)
SRR343336
....................................................AATGCTATAGCTCTGGTTT................................................................................................................................................................................... 191.000.00------1.00--------
............................................................................................................................................................................................................TTCAGATTCCAGCATTAAA........................... 191.000.00-----------1.00---
..................................................................................................................................................................................................................................TTTCACTTTCATAAGACC...... 181.000.00-------------1.00-
................................................................................................................................................................CCTTCAATGAATTCTGTTGG...................................................................... 201.000.00---------1.00-----
..............................................................................................................................AGATAATAATATTAAGGC.......................................................................................................... 181.000.00--1.00------------
.............................................................................................................................................................................................................CAAATGCTGGAATCTGA............................ 1720.500.50--------------0.50