ID: uc001ozg.2_intron_7_0_chr11_77961447_r.3p
GENE: (2)
chr11:77961397-77961646-


(1)
B-CELL 		(3)
BRAIN 		(1)
BREAST 		(12)
CELL-LINE 		(3)
CERVIX 		(1)
HEART 		(4)
LIVER 		(1)
OTHER 		(20)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GCCATACAAAGGTAAAGAGGACCTCTTCTTCAACCAAGATGGCCAGGAGGGCAGCAAGGGGCAGGTATATGAGAGGGAGAGAATGCTAGTGCTGGATTATTTTCTCTGCTCTTACTCTTTTTTCTTCCTCTGACAACTCACTTTGGGATAAGGATACATTTCCTTCCTTTTTCATTCACAGAGCTATTTCTCCTTTTCAGACTCCCTGAGAAATGTTTCCTCAGCCGGTCATGGCCCCCGCTCTTCTCCA
...................................................................................................................(((((.((((.....(((....)))....)))).)))))................................................................................................
.........................................................................................................106......................................................163.....................................................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR040042(GSM532927)
G428N. (cervix)		SRR343334SRR189784SRR040018(GSM532903)
G701N. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532883(GSM532883)
G871N. (cervix)		SRR343336SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR343337SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR343335SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
............................................................................................................................................CTTTGGGATAAGGATTGGC...........................................................................................1916.000.0010.00---1.00--1.002.00----------------1.00-----1.00---------------------
...........................................................................................................................................ACTTTGGGATAAGGATTGGC...........................................................................................2027.001.003.00----0.50------------------------1.00-----------0.50--0.500.50-0.500.50---
............................................................................................................................................CTTTGGGATAAGGATTGG............................................................................................187.000.001.00----1.00-1.00----1.00-----1.00-------------1.00----1.00---------------
..............................................................................................................CTTACTCTTTTTTCTTTTG.........................................................................................................................194.000.00-3.00---------1.00-----------------------------------------
.......................................................................AGAGGGAGAGAATGCGGTC................................................................................................................................................................193.000.00---------2.001.00------------------------------------------
..............................................................................................................................................................TTTCCTTCCTTTTTCGCCA.........................................................................193.000.00----------1.00------1.00----------------------1.00------------
......................................................................GAGAGGGAGAGAATGCGGT.................................................................................................................................................................193.000.00--------------1.00----1.00---------------1.00-----------------
...........................................................................................................................................ACTTTGGGATAAGGATTGG............................................................................................1922.501.001.00-----------0.50----------------------------------0.50--0.50--
.....................................................................TGAGAGGGAGAGAATGCG...................................................................................................................................................................1822.001.00---------------------1.00----1.00--------------------------
................................................................................................................................................................................CACAGAGCTATTTCTCCTTTT.....................................................2112.002.00------2.00----------------------------------------------
............................................................................................................................................................CATTTCCTTCCTTTTTTGCC..........................................................................202.000.00-----------------------1.00---1.00-------------------------
.......................................................................AGAGGGAGAGAATGCGGT.................................................................................................................................................................182.000.00----2.00------------------------------------------------
..........................................................................................................................................................TACATTTCCTTCCTTCAGG.............................................................................191.000.00--1.00--------------------------------------------------
...........................................................................................................................................ACTTTGGGATAAGGATAGGCT..........................................................................................211.000.001.00----------------------------------------------------
.............................................................................................................TCTTACTCTTTTTTCTTTTTG........................................................................................................................211.000.00-----------------------------1.00-----------------------
............................................................................................................CTCTTACTCTTTTTTCTTCCTATG......................................................................................................................241.000.00--1.00--------------------------------------------------
.........................................................................................................................................................ATACATTTCCTTCCTTATCC.............................................................................201.000.00--1.00--------------------------------------------------
...........................................................................................................................................................ACATTTCCTTCCTTTATG.............................................................................181.000.00-1.00---------------------------------------------------
..............................................................................................................CTTACTCTTTTTTCTTCCTTTTT.....................................................................................................................231.000.00--1.00--------------------------------------------------
....................................................................................................................................................................TCCTTTTTCATTCACAGAGCTATTT.............................................................2511.001.00---1.00-------------------------------------------------
...........................................................................................................................................................................................................CCCTGAGAAATGTTTCCTCAGCCGGTC....................2711.001.00--------------------1.00--------------------------------
..............................................................................................................CTTACTCTTTTTTCTTTTTG........................................................................................................................201.000.00-----------1.00-----------------------------------------
.....................................................................TGAGAGGGAGAGAATGC....................................................................................................................................................................1721.001.00----------------------------------1.00------------------
....................................................................................................................................................................TCCTTTTTCATTCACAGAGCTTTTT.............................................................251.000.00---1.00-------------------------------------------------
.....................................................................................................................................................................................................CAGACTCCCTGAGAAATGTTTCCTCAGC.........................2811.001.00-------------1.00---------------------------------------
......................................................................GAGAGGGAGAGAATGCG...................................................................................................................................................................171.000.00----------------------------1.00------------------------
...............................................................................AGAATGCTAGTGCTGGATT........................................................................................................................................................1911.001.00------------------------------------1.00----------------
...........................................................................................................................................ACTTTGGGATAAGGAT...............................................................................................1621.001.00-----------------------------------------0.50-0.50---------
...........................................................................................................................................ACTTTGGGATAAGGATTGGT...........................................................................................2020.501.00--------------------------------------------0.50--------
...........................................................................................................................................ACTTTGGGATAAGGATTAGC...........................................................................................2020.501.00-----0.50-----------------------------------------------
...........................................................................................................................................ACTTTGGGATAAGGA................................................................................................1590.330.33-------------0.11---------------------------0.11----------0.11
........................CTTCTTCAACCAAGA...................................................................................................................................................................................................................1570.140.14---------------------------------------------------0.14-

Antisense strand
GCCATACAAAGGTAAAGAGGACCTCTTCTTCAACCAAGATGGCCAGGAGGGCAGCAAGGGGCAGGTATATGAGAGGGAGAGAATGCTAGTGCTGGATTATTTTCTCTGCTCTTACTCTTTTTTCTTCCTCTGACAACTCACTTTGGGATAAGGATACATTTCCTTCCTTTTTCATTCACAGAGCTATTTCTCCTTTTCAGACTCCCTGAGAAATGTTTCCTCAGCCGGTCATGGCCCCCGCTCTTCTCCA
...................................................................................................................(((((.((((.....(((....)))....)))).)))))................................................................................................
.........................................................................................................106......................................................163.....................................................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR040042(GSM532927)
G428N. (cervix)		SRR343334SRR189784SRR040018(GSM532903)
G701N. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532883(GSM532883)
G871N. (cervix)		SRR343336SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR343337SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR343335SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
............................................................................................................................TTCCTCTGACAACTCAC............................................................................................................. 172.000.00------------------------1.00--------------1.00-------------
.................................................................................................................ACTCTTTTTTCTTCCTCTGAAA................................................................................................................... 221.000.00---------------------------------1.00-------------------
............................................................................................................................TTCCTCTGACAACTCACT............................................................................................................ 181.000.00---------------1.00-------------------------------------
..........................................................................................................................................................................................................TCCCTGAGAAATGTTTCCTA............................ 201.000.00----------------1.00------------------------------------
.................................................................................................................................................................................ACAGAGCTATTTCTCCAGAT..................................................... 201.000.00---1.00-------------------------------------------------
........................................................................................................................................................................................CAGGGAGTCTGAAAAGGAGAAATA.......................................... 2411.001.00----------------------1.00------------------------------
.................................................CCTCTCATATACCTGCCCCTTGCTGCC.............................................................................................................................................................................. 2711.001.00--------------------------------------1.00--------------