ID: uc001oys.2_intron_3_0_chr11_77602887_r.5p
GENE: (19)
chr11:77605136-77605385-


(1)
AGO2.ip
(1)
BRAIN
(2)
BREAST
(9)
CELL-LINE
(3)
HEART
(2)
HELA
(1)
LIVER
(1)
OTHER
(26)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
TTATTTGGGATGTGTGAAAAATTTTTACAGGAAGTAGACTTTTTTCAGAGGTAAGTATTTTATAACTCTTCTGGCTTATTAAATCTTGGTTACATGGAGTATAGCACTTGCAGGCAATAGGAACAATCACAAATCACATTCCTTGGTTTAGCTTGTGCAGCCAAGCTATCATCTGTGGCCATGTCGTTAACCTTAAATTAGGAAAAAAAGAACCTAATTTGGTTTTTTTCCTTAATGTTATAGAAACTTC
......................................................................................((((((((((((((...((((..((((((...(((((...............)))))..)))).))..))))......))).)))..)))))))).....................................................................
..................................................................................83....................................................................................................185...............................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
GSE20417(GSM514985)
Colon and lung cancer pool.
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189785SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343335TAX577738(Rovira)
total RNA. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR029125(GSM416754)
U2OS. (cell line)
SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)
..................................................................................................................................................................AAGCTATCATCTGTGGGAT.....................................................................19128.007.0022.004.00-------------------1.00---1.00------------------------
...................................................................................................................................................................AGCTATCATCTGTGGGAT.....................................................................1813.000.0011.00------------1.00---------1.00--------------------------
..................................................................................................................................................................AAGCTATCATCTGTGGGA......................................................................1819.007.00--2.00-------1.00-1.00--1.00--------1.00-1.00--1.00--------1.00-----------
..................................................................................................................................................................AAGCTATCATCTGTGGG.......................................................................1718.007.00---1.00------1.00--1.001.001.00---1.001.00-1.00---------------------------
..................................................................................................................................................................AAGCTATCATCTGTGG........................................................................1617.007.00--1.00---2.00-------1.00------------1.00---1.00----1.00-------------
...................................................................................................................................................................AGCTATCATCTGTGGGATT....................................................................194.000.00---1.00----2.00---1.00-------------------------------------
..................................................................................................................................................................AAGCTATCATCTGTGGGATT....................................................................2014.007.00---1.00-------2.00-------------------------1.00------------
......................................................................................................................................................................................................TAGGAAAAAAAGAACTCTG.................................192.000.00----------------2.00---------------------------------
.....................................................................................................................................................................................................TTAGGAAAAAAAGAACG....................................172.000.00---------2.00----------------------------------------
........................................................................................................................................................................................................................ATTTGGTTTTTTTCCTTGCAG.............211.000.00--------------------------------1.00-----------------
.................................................................................................................................................................CAAGCTATCATCTGTGGCAT.....................................................................201.000.00-------1.00------------------------------------------
.......................................................................................GGTTACATGGAGTATTAG.................................................................................................................................................181.000.00-----------------------------------1.00--------------
..............................................................................................................................................................................................................................TTTTTTTCCTTAATGTGATA........201.000.00----------------------------1.00---------------------
......................................................................................................................................................GCTTGTGCAGCCAAGCG...................................................................................171.000.00------------------------------1.00-------------------
...............................................................................................................................................................GCCAAGCTATCATCTGCAGG.......................................................................201.000.00-------1.00------------------------------------------
.................................GTAGACTTTTTTCAGAGG.......................................................................................................................................................................................................1840.750.75----------------------------------------0.75---------
..........................ACAGGAAGTAGACTTTTTTCAGAGGT......................................................................................................................................................................................................2630.670.67----0.67---------------------------------------------
............................AGGAAGTAGACTTTTTTCAG..........................................................................................................................................................................................................2030.670.67-----0.67--------------------------------------------
.......................................................................................................................................................CTTGTGCAGCCAAGC....................................................................................1520.500.50---------------------------------------0.50----------
......................TTTTACAGGAAGTAGACTTTTTTCAGAGGT......................................................................................................................................................................................................3030.330.33---------------------------------------------0.33----
..........................ACAGGAAGTAGACTTTTTTCAGAGGTA.....................................................................................................................................................................................................2730.330.33----0.33---------------------------------------------
..........................ACAGGAAGTAGACTTTTTTCAGAGGTAAG...................................................................................................................................................................................................2930.330.33----0.33---------------------------------------------
....................................................................................................ATAGCACTTGCAGGCAATAGGAACAATC..........................................................................................................................2830.330.33----0.33---------------------------------------------
..........................ACAGGAAGTAGACTTTTTTCAGAGG.......................................................................................................................................................................................................2530.330.33------0.33-------------------------------------------
.......................TTTACAGGAAGTAGACTTTTTTCAGAG........................................................................................................................................................................................................2730.330.33------------------------------------------------0.33-
.....................TTTTTACAGGAAGTAGACT..................................................................................................................................................................................................................1930.330.33---------------------------------------0.33----------
................AAAAATTTTTACAGGAAGTAGACTTTTTTCAG..........................................................................................................................................................................................................3230.330.33-----------------0.33--------------------------------
.................................................................................................................GCAATAGGAACAATCACAAATCAC.................................................................................................................2430.330.33------------------------------------------0.33-------
.TATTTGGGATGTGTGAAA.......................................................................................................................................................................................................................................1830.330.33-----------------------------------------0.33--------
..........................ACAGGAAGTAGACTTTTTTC............................................................................................................................................................................................................2030.330.33--------------------------------------------0.33-----
................................................................................................................................................................................................................................TTTTTCCTTAATGTTATA........1830.330.33-----------------0.33--------------------------------
........................TTACAGGAAGTAGACTT.................................................................................................................................................................................................................1730.330.33----------------------------------------------0.33---
.............................GGAAGTAGACTTTTTTCAGAG........................................................................................................................................................................................................2130.330.33--0.33-----------------------------------------------
......................TTTTACAGGAAGTAGAC...................................................................................................................................................................................................................1740.250.25-------------------------------------------------0.25
.................................GTAGACTTTTTTCAGAG........................................................................................................................................................................................................1740.250.25----0.25---------------------------------------------
...............................AAGTAGACTTTTTTCAGAG........................................................................................................................................................................................................1940.250.25----0.25---------------------------------------------

Antisense strand
TTATTTGGGATGTGTGAAAAATTTTTACAGGAAGTAGACTTTTTTCAGAGGTAAGTATTTTATAACTCTTCTGGCTTATTAAATCTTGGTTACATGGAGTATAGCACTTGCAGGCAATAGGAACAATCACAAATCACATTCCTTGGTTTAGCTTGTGCAGCCAAGCTATCATCTGTGGCCATGTCGTTAACCTTAAATTAGGAAAAAAAGAACCTAATTTGGTTTTTTTCCTTAATGTTATAGAAACTTC
......................................................................................((((((((((((((...((((..((((((...(((((...............)))))..)))).))..))))......))).)))..)))))))).....................................................................
..................................................................................83....................................................................................................185...............................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
GSE20417(GSM514985)
Colon and lung cancer pool.
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189785SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343335TAX577738(Rovira)
total RNA. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR029125(GSM416754)
U2OS. (cell line)
SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)
...........................................TTCAGAGGTAAGTATTTT............................................................................................................................................................................................. 182.000.00-----2.00--------------------------------------------
...............................................GAGGTAAGTATTTTAGAT......................................................................................................................................................................................... 181.000.00-----------------1.00--------------------------------
............................................TCAGAGGTAAGTATTTTCAT.......................................................................................................................................................................................... 201.000.00----------------------------------1.00---------------
.......................................................................................................................................................................................................AGGAAAAAAAGAACCTATC................................ 191.000.00---------------------------------1.00----------------
............................................................................................................................................................GCAGCCAAGCTATCATCGT........................................................................... 191.000.00------------------1.00-------------------------------
.............................................................................................................................GCTAAACCAAGGAATGTGATTTGTGAT.................................................................................................. 2730.330.33-------------------------------------------0.33------
.........................................................................................................................AATGTGATTTGTGATTGTT.............................................................................................................. 1930.330.33-----------------------------------------0.33--------
...................................TAAAATACTTACCTCTGAAAAAAGTCT............................................................................................................................................................................................ 2730.330.33----0.33---------------------------------------------
................................TACTTACCTCTGAAAAAAGTCTACT................................................................................................................................................................................................. 2530.330.33-----------------------------------------------0.33--
..............................................................................................................................................................GATGATAGCTTGGCT............................................................................. 1540.250.25------------------0.25-------------------------------
.............................................AAAATACTTACCTCTG............................................................................................................................................................................................. 1650.200.20-------0.20------------------------------------------