| (1) BRAIN | (7) CELL-LINE | (2) CERVIX | (2) HELA | (1) LIVER | (2) OTHER | (1) RRP40.ip |
| TGAATGAGTGAATGAATAAGTGAATTCAGAAGTGAAAGACATTATGCCTTCTAGGGGCTTATAGTCTTCTTGGGGAGATAAAGCATGAAGTTTACAATAAATAGAAAGATAAGCAAACAGACAAAAAAATTGTTTGTTTTTTTTTTTTTAAGAGAAACTTTGTTTATAGGGTTTGTTTTTTTTTAACTAATATAAAACAGATTCCCAGCCTGTAGTTCATGTAATTGCTTCCCGGCGTCAGGATTGGTCA .....................................................................................................................................................((((.((((((((....)))))))).))))....................................................................... ............................................................................................................................125................................................................192........................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189784 | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | GSM1105753INPUT(GSM1105753) small RNA sequencing data. (hela) | GSM532874(GSM532874) G699T. (cervix) | GSM532881(GSM532881) G696N. (cervix) | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | SRR189786 | GSM450602(GSM450602) miRNA sequencing raw reads from post-mortem s. (brain) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR314796(SRX084354) "Total RNA, fractionated (15-30nt)". (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTTCTTT.............................................................. | 21 | 13.00 | 0.00 | 11.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTCTT................................................................ | 19 | 8.00 | 0.00 | 6.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTCTTT............................................................... | 20 | 6.00 | 0.00 | 5.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTCC................................................................. | 18 | 3.00 | 0.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................TTGTTTGTTTTTTTTTTTTTCTGC................................................................................................. | 24 | 3.00 | 0.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTCTTC............................................................... | 20 | 3.00 | 0.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTTTTAT.............................................................. | 21 | 3.00 | 0.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................TGTTTGTTTTTTTTTTTTTCTGC................................................................................................. | 23 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTTCTC............................................................... | 20 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTTTATT.............................................................. | 21 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTCCT................................................................ | 19 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................GTTTGTTTTTTTTTTTTTCTTC................................................................................................. | 22 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................GTTTGTTTTTTTTTTTTTATTTC................................................................................................ | 23 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTTTACC.............................................................. | 21 | 2.00 | 0.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................TGTTTGTTTTTTTTTTTTTCGC.................................................................................................. | 22 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTCTCT............................................................... | 20 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTACT................................................................ | 19 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTATTT............................................................... | 20 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTTCCTT.............................................................. | 21 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................................TAATATAAAACAGATATTG............................................ | 19 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTTTCTC.............................................................. | 21 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTATC................................................................ | 19 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTAT................................................................. | 18 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTTTAC............................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTTTTGC.............................................................. | 21 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................................................ATTGCTTCCCGGCGTCAGGATTGGTC. | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................ATTGTTTGTTTTTTTTTTTTTGCG.................................................................................................. | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTTCCTA.............................................................. | 21 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................TTGTTTGTTTTTTTTTTTTTATTTT................................................................................................ | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................ATTGTTTGTTTTTTTTTTTTTAATG................................................................................................. | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTTTCCC.............................................................. | 21 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................AATTCAGAAGTGAAACG................................................................................................................................................................................................................... | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ................................................................................................................................................................TGTTTATAGGGTTTGTTTTTTTTTAACT.............................................................. | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................ATTGTTTGTTTTTTTTTTTTTTGG.................................................................................................. | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTCATT............................................................... | 20 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................GTTTGTTTTTTTTTTTTTCAAA................................................................................................. | 22 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................GGTTTGTTTTTTTTTATTC.............................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTTTCAT.............................................................. | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................TGTTTGTTTTTTTTTTTTTCGGC................................................................................................. | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................TGTTTGTTTTTTTTTTTTTCGA.................................................................................................. | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTCAT................................................................ | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................TGTTTGTTTTTTTTTTTTTATTTC................................................................................................ | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................TTGTTTTTTTTTAACTAATTTT........................................................ | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTATT................................................................. | 18 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................AATTGTTTGTTTTTTTTTTTTTTGG.................................................................................................. | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................GTTTGTTTTTTTTTTTTTATTTT................................................................................................ | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................TGTTTGTTTTTTTTTTTTTAAGGG................................................................................................ | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................ACTTTGTTTATAGGGTTTGTTTTTTTTC.................................................................. | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................GTTTGTTTTTTTTTACATG............................................................. | 19 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................TATAGGGTTTGTTTTCTTT................................................................... | 19 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTTCTAA.............................................................. | 21 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................ATAGGGTTTGTTTTTTTCTTC................................................................ | 21 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................GTTTGTTTTTTTTTTTTTACCCA................................................................................................ | 23 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................AATTCAGAAGTGAAAGAAC................................................................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| ......................................................................................................................................................................................................................................CCCGGCGTCAGGATTGGTCA | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTATCT............................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................TTTGTTTTTTTTTTTTTAAGTCGG.............................................................................................. | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTTCTG............................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTCCC................................................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| ..........................................................................................................................................................................................................TCCCAGCCTGTAGTTCATG............................. | 19 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTTATTT.............................................................. | 21 | 6 | 0.67 | 0.17 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................TTGCTTCCCGGCGTC........... | 15 | 2 | 0.50 | 0.50 | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................AAATTGTTTGTTTTTTTTTTTTT..................................................................................................... | 23 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTTATC............................................................... | 20 | 6 | 0.33 | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTTATTTT............................................................. | 22 | 6 | 0.33 | 0.17 | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTTACCTT............................................................. | 22 | 6 | 0.17 | 0.17 | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTTACTTT............................................................. | 22 | 6 | 0.17 | 0.17 | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................AGGGTTTGTTTTTTTTTA................................................................. | 18 | 6 | 0.17 | 0.17 | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TGAATGAGTGAATGAATAAGTGAATTCAGAAGTGAAAGACATTATGCCTTCTAGGGGCTTATAGTCTTCTTGGGGAGATAAAGCATGAAGTTTACAATAAATAGAAAGATAAGCAAACAGACAAAAAAATTGTTTGTTTTTTTTTTTTTAAGAGAAACTTTGTTTATAGGGTTTGTTTTTTTTTAACTAATATAAAACAGATTCCCAGCCTGTAGTTCATGTAATTGCTTCCCGGCGTCAGGATTGGTCA .....................................................................................................................................................((((.((((((((....)))))))).))))....................................................................... ............................................................................................................................125................................................................192........................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189784 | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | GSM1105753INPUT(GSM1105753) small RNA sequencing data. (hela) | GSM532874(GSM532874) G699T. (cervix) | GSM532881(GSM532881) G696N. (cervix) | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | SRR189786 | GSM450602(GSM450602) miRNA sequencing raw reads from post-mortem s. (brain) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR314796(SRX084354) "Total RNA, fractionated (15-30nt)". (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................................................................................GTTTGTTTTTTTTTTTTTGGT.................................................................................................. | 21 | 2.00 | 0.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................GGTTTGTTTTTTTTTAAAAAC............................................................ | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ..............................................................................................................AAGCAAACAGACAAAAAAATGGA..................................................................................................................... | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................GTTTGTTTTTTTTTAGCGA............................................................. | 19 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................AGCAAACAGACAAAAAAACTTA..................................................................................................................... | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...ATGAGTGAATGAATACCG..................................................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................AAGCAAACAGACAAAAAAACTG...................................................................................................................... | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................GTTTGTTTTTTTTTTTTTGTCG................................................................................................. | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ...............................................................................................CTTATCTTTCTATTTATT......................................................................................................................................... | 18 | 2 | 0.50 | 0.50 | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - |