ID: uc001oxo.1_intron_1_0_chr11_76239511_f.3p
GENE: C11orf30(2)
chr11:76246739-76246988+


(1)
BRAIN
(7)
CELL-LINE
(2)
CERVIX
(2)
HELA
(1)
LIVER
(2)
OTHER
(1)
RRP40.ip

Sense strand
TGAATGAGTGAATGAATAAGTGAATTCAGAAGTGAAAGACATTATGCCTTCTAGGGGCTTATAGTCTTCTTGGGGAGATAAAGCATGAAGTTTACAATAAATAGAAAGATAAGCAAACAGACAAAAAAATTGTTTGTTTTTTTTTTTTTAAGAGAAACTTTGTTTATAGGGTTTGTTTTTTTTTAACTAATATAAAACAGATTCCCAGCCTGTAGTTCATGTAATTGCTTCCCGGCGTCAGGATTGGTCA
.....................................................................................................................................................((((.((((((((....)))))))).)))).......................................................................
............................................................................................................................125................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
GSM532874(GSM532874)
G699T. (cervix)
GSM532881(GSM532881)
G696N. (cervix)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
.......................................................................................................................................................................AGGGTTTGTTTTTTTTTCTTT..............................................................2113.000.0011.002.00-------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTCTT................................................................198.000.006.002.00-------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTCTTT...............................................................206.000.005.001.00-------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTCC.................................................................183.000.003.00--------------
.................................................................................................................................TTGTTTGTTTTTTTTTTTTTCTGC.................................................................................................243.000.003.00--------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTCTTC...............................................................203.000.003.00--------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTTTTAT..............................................................213.000.003.00--------------
..................................................................................................................................TGTTTGTTTTTTTTTTTTTCTGC.................................................................................................232.000.001.001.00-------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTTCTC...............................................................202.000.002.00--------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTTTATT..............................................................212.000.002.00--------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTCCT................................................................192.000.002.00--------------
...................................................................................................................................GTTTGTTTTTTTTTTTTTCTTC.................................................................................................222.000.001.001.00-------------
...................................................................................................................................GTTTGTTTTTTTTTTTTTATTTC................................................................................................232.000.001.001.00-------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTTTACC..............................................................212.000.00-2.00-------------
..................................................................................................................................TGTTTGTTTTTTTTTTTTTCGC..................................................................................................222.000.002.00--------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTCTCT...............................................................202.000.002.00--------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTACT................................................................192.000.002.00--------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTATTT...............................................................202.000.002.00--------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTTCCTT..............................................................212.000.002.00--------------
...........................................................................................................................................................................................TAATATAAAACAGATATTG............................................191.000.00---1.00-----------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTTTCTC..............................................................211.000.00-1.00-------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTATC................................................................191.000.00-1.00-------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTAT.................................................................181.000.001.00--------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTTTAC...............................................................201.000.001.00--------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTTTTGC..............................................................211.000.00-1.00-------------
...............................................................................................................................................................................................................................ATTGCTTCCCGGCGTCAGGATTGGTC.2611.001.001.00--------------
................................................................................................................................ATTGTTTGTTTTTTTTTTTTTGCG..................................................................................................241.000.001.00--------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTTCCTA..............................................................211.000.00-1.00-------------
.................................................................................................................................TTGTTTGTTTTTTTTTTTTTATTTT................................................................................................251.000.00-1.00-------------
................................................................................................................................ATTGTTTGTTTTTTTTTTTTTAATG.................................................................................................251.000.001.00--------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTTTCCC..............................................................211.000.00-1.00-------------
......................AATTCAGAAGTGAAACG...................................................................................................................................................................................................................171.000.00--------1.00------
................................................................................................................................................................TGTTTATAGGGTTTGTTTTTTTTTAACT..............................................................2811.001.00-1.00-------------
................................................................................................................................ATTGTTTGTTTTTTTTTTTTTTGG..................................................................................................241.000.00-1.00-------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTCATT...............................................................201.000.00-1.00-------------
...................................................................................................................................GTTTGTTTTTTTTTTTTTCAAA.................................................................................................221.000.00--1.00------------
.........................................................................................................................................................................GGTTTGTTTTTTTTTATTC..............................................................191.000.00-------1.00-------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTTTCAT..............................................................211.000.001.00--------------
..................................................................................................................................TGTTTGTTTTTTTTTTTTTCGGC.................................................................................................231.000.001.00--------------
..................................................................................................................................TGTTTGTTTTTTTTTTTTTCGA..................................................................................................221.000.00-1.00-------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTCAT................................................................191.000.001.00--------------
..................................................................................................................................TGTTTGTTTTTTTTTTTTTATTTC................................................................................................241.000.00-1.00-------------
............................................................................................................................................................................TTGTTTTTTTTTAACTAATTTT........................................................221.000.00-1.00-------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTATT.................................................................181.000.00-1.00-------------
...............................................................................................................................AATTGTTTGTTTTTTTTTTTTTTGG..................................................................................................251.000.001.00--------------
...................................................................................................................................GTTTGTTTTTTTTTTTTTATTTT................................................................................................231.000.001.00--------------
..................................................................................................................................TGTTTGTTTTTTTTTTTTTAAGGG................................................................................................241.000.001.00--------------
............................................................................................................................................................ACTTTGTTTATAGGGTTTGTTTTTTTTC..................................................................281.000.001.00--------------
..........................................................................................................................................................................GTTTGTTTTTTTTTACATG.............................................................191.000.00--1.00------------
....................................................................................................................................................................TATAGGGTTTGTTTTCTTT...................................................................191.000.00--1.00------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTTCTAA..............................................................211.000.00-1.00-------------
.....................................................................................................................................................................ATAGGGTTTGTTTTTTTCTTC................................................................211.000.00--1.00------------
...................................................................................................................................GTTTGTTTTTTTTTTTTTACCCA................................................................................................231.000.00--1.00------------
......................AATTCAGAAGTGAAAGAAC.................................................................................................................................................................................................................191.000.00------------1.00--
......................................................................................................................................................................................................................................CCCGGCGTCAGGATTGGTCA2011.001.00------1.00--------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTATCT...............................................................201.000.001.00--------------
....................................................................................................................................TTTGTTTTTTTTTTTTTAAGTCGG..............................................................................................241.000.001.00--------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTTCTG...............................................................201.000.001.00--------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTCCC................................................................191.000.00----------1.00----
..........................................................................................................................................................................................................TCCCAGCCTGTAGTTCATG.............................1911.001.00-1.00-------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTTATTT..............................................................2160.670.170.330.33-------------
................................................................................................................................................................................................................................TTGCTTCCCGGCGTC...........1520.500.50-0.50-------------
..............................................................................................................................AAATTGTTTGTTTTTTTTTTTTT.....................................................................................................2320.500.50-------------0.50-
.......................................................................................................................................................................AGGGTTTGTTTTTTTTTATC...............................................................2060.330.17--------------0.33
.......................................................................................................................................................................AGGGTTTGTTTTTTTTTATTTT.............................................................2260.330.17-0.33-------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTTACCTT.............................................................2260.170.170.17--------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTTACTTT.............................................................2260.170.170.17--------------
.......................................................................................................................................................................AGGGTTTGTTTTTTTTTA.................................................................1860.170.170.17--------------

Antisense strand
TGAATGAGTGAATGAATAAGTGAATTCAGAAGTGAAAGACATTATGCCTTCTAGGGGCTTATAGTCTTCTTGGGGAGATAAAGCATGAAGTTTACAATAAATAGAAAGATAAGCAAACAGACAAAAAAATTGTTTGTTTTTTTTTTTTTAAGAGAAACTTTGTTTATAGGGTTTGTTTTTTTTTAACTAATATAAAACAGATTCCCAGCCTGTAGTTCATGTAATTGCTTCCCGGCGTCAGGATTGGTCA
.....................................................................................................................................................((((.((((((((....)))))))).)))).......................................................................
............................................................................................................................125................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
GSM532874(GSM532874)
G699T. (cervix)
GSM532881(GSM532881)
G696N. (cervix)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
...................................................................................................................................GTTTGTTTTTTTTTTTTTGGT.................................................................................................. 212.000.00----2.00----------
.........................................................................................................................................................................GGTTTGTTTTTTTTTAAAAAC............................................................ 211.000.00---------1.00-----
..............................................................................................................AAGCAAACAGACAAAAAAATGGA..................................................................................................................... 231.000.00-1.00-------------
..........................................................................................................................................................................GTTTGTTTTTTTTTAGCGA............................................................. 191.000.00---1.00-----------
...............................................................................................................AGCAAACAGACAAAAAAACTTA..................................................................................................................... 221.000.001.00--------------
...ATGAGTGAATGAATACCG..................................................................................................................................................................................................................................... 181.000.00-----1.00---------
..............................................................................................................AAGCAAACAGACAAAAAAACTG...................................................................................................................... 221.000.001.00--------------
...................................................................................................................................GTTTGTTTTTTTTTTTTTGTCG................................................................................................. 221.000.00-----------1.00---
...............................................................................................CTTATCTTTCTATTTATT......................................................................................................................................... 1820.500.50-----0.50---------