ID: uc001owm.1_intron_2_0_chr11_75136627_r.3p
GENE: (3)
chr11:75136577-75136826-


(1)
B-CELL 		(2)
BREAST 		(3)
CELL-LINE 		(1)
CERVIX 		(2)
HELA 		(2)
OTHER 		(5)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
AAACCGGCTCAGGGAGGTACAGCAACTGGGTGGAGGCTGCCCAGGTGGTGGCAGCACTGGGCTCGGGGGTCAGTTTGGTCCTGAAACTGGGTTGGGGACAGGGATAGTTTCCAGCTCAAAGACTGTAAGGACTGAAGCGATGAGGCCGAGGGCCCTAAGGCCCTGGCACCCGGCTCCCCGGCCCATGTCCTCACTTGCAGCTGTTCGCGGTGGGTGGCTTCGACGGCCTGAGGCGCCTGCACAGCGTGGA
.................................................................................................................(((...((.((....)).))..)))......(((.((((((....)))))))))..((((....)))).....................................................................
..............................................................................................................111......................................................................184................................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786TAX577744(Rovira)
total RNA. (breast)		GSM532887(GSM532887)
G761N. (cervix)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
...................................................................................................................TCAAAGACTGTAAGGACTGAAGCGA..............................................................................................................25115.0015.0015.00----------------
......................................................................................................................AAGACTGTAAGGACTGAAGCGATGAGG.........................................................................................................2714.004.004.00----------------
.............................................................................................................................TAAGGACTGAAGCGATGAGGCCGAGG...................................................................................................2613.003.003.00----------------
...........................................................................................................................TGTAAGGACTGAAGCGATGAGGCC.......................................................................................................2412.002.002.00----------------
......................................................................................................................AAGACTGTAAGGACTGAAGCGATTAGG.........................................................................................................272.000.002.00----------------
..................................................................................................................................................................CTGGCACCCGGCTCCCCG......................................................................1812.002.00-2.00---------------
........................................................................................................................GACTGTAAGGACTGAAGCGATGAGG.........................................................................................................2512.002.002.00----------------
........................................................................................................TAGTTTCCAGCTCAAAGACTGTAAGGAC......................................................................................................................2812.002.002.00----------------
..ACCGGCTCAGGGAGGTTG......................................................................................................................................................................................................................................181.000.00----------1.00------
........................................................................................................TAGTTTCCAGCTCAAAGACTGTAGG.........................................................................................................................251.000.001.00----------------
...................................................................................................................TCAAAGACTGTAAGGAC......................................................................................................................1711.001.001.00----------------
...................................................................................................................TCAAAGACTGTAAGGACTGAAGCGAA.............................................................................................................2611.0015.001.00----------------
...................................................................................................................TCAAAGACTGTAAGGACTGAAGCG...............................................................................................................2411.001.001.00----------------
...........................................................................................................................TGTAAGGACTGAAGCGATGAGGCCGAGG...................................................................................................2811.001.001.00----------------
................................................TGGCAGCACTGGGCTCGGGGGTC...................................................................................................................................................................................2311.001.00-------1.00---------
........................................................................................................................................................................CCCGGCTCCCCGGCCCAG................................................................181.000.00-----1.00-----------
........................................................................................................TAGTTTCCAGCTCAAAGACTGTAAGG........................................................................................................................2611.001.001.00----------------
..................................................................................................................CTCAAAGACTGTAAGGAC......................................................................................................................1811.001.00---1.00-------------
........................................................................................................TAGTTTCCAGCTCAAAGACTGTAAGGA.......................................................................................................................2711.001.001.00----------------
......................................................................................................................AAGACTGTAAGGACTGAAGCGATGAG..........................................................................................................2611.001.001.00----------------
............................................................................................................................................TGAGGCCGAGGGCCCTATAA..........................................................................................201.000.00----1.00------------
............................................................................................................TTCCAGCTCAAAGACTGTAAGGACT.....................................................................................................................2511.001.001.00----------------
.......................................................................................................................AGACTGTAAGGACTGAAGCGATGAGG.........................................................................................................2611.001.001.00----------------
......................................................................................................................AAGACTGTAAGGACTGAAGCGATGA...........................................................................................................2511.001.001.00----------------
...............................................................................................................CAGCTCAAAGACTGTAAGGA.......................................................................................................................2011.001.00------------1.00----
...............................................................................................................CAGCTCAAAGACTGTAAGGACTGAAGC................................................................................................................2711.001.001.00----------------
........................................................................................................................................................................CCCGGCTCCCCGGCCCATA...............................................................191.000.00-----------1.00-----
...........................................................................................................................TGTAAGGACTGAAGCGATGAGGCCG......................................................................................................2511.001.001.00----------------
...................................................................................................................TCAAAGACTGTAAGGACTGAAGCGAT.............................................................................................................2611.001.001.00----------------
.............................................................................................................................TAAGGACTGAAGCGATGAGGCCGAGGGCCC...............................................................................................3011.001.001.00----------------
..............................................................................................................CCAGCTCAAAGACTGTAAGGACTGAAGC................................................................................................................2811.001.001.00----------------
...................................................................................................................TCAAAGACTGTAAGGACTGA...................................................................................................................2011.001.001.00----------------
.......................................................................................................................AGACTGTAAGGACTGAAGCGATGAGGC........................................................................................................2711.001.001.00----------------
..........................................................................................................................CTGTAAGGACTGAAGCGATGAGGCC.......................................................................................................2511.001.001.00----------------
...................................................................................................................TCAAAGACTGTAAGGACTGAAGC................................................................................................................2311.001.001.00----------------
........................................................CTGGGCTCGGGGGTC...................................................................................................................................................................................1590.220.22---------------0.110.11
......................................GCCCAGGTGGTGGCAGC...................................................................................................................................................................................................1750.200.20-------------0.20---
.................................................................................................................................................................CCTGGCACCCGGCTCC.........................................................................1660.170.17--------------0.17--

Antisense strand
AAACCGGCTCAGGGAGGTACAGCAACTGGGTGGAGGCTGCCCAGGTGGTGGCAGCACTGGGCTCGGGGGTCAGTTTGGTCCTGAAACTGGGTTGGGGACAGGGATAGTTTCCAGCTCAAAGACTGTAAGGACTGAAGCGATGAGGCCGAGGGCCCTAAGGCCCTGGCACCCGGCTCCCCGGCCCATGTCCTCACTTGCAGCTGTTCGCGGTGGGTGGCTTCGACGGCCTGAGGCGCCTGCACAGCGTGGA
.................................................................................................................(((...((.((....)).))..)))......(((.((((((....)))))))))..((((....)))).....................................................................
..............................................................................................................111......................................................................184................................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786TAX577744(Rovira)
total RNA. (breast)		GSM532887(GSM532887)
G761N. (cervix)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
...CCGGCTCAGGGAGGTACAGCAAC................................................................................................................................................................................................................................ 232.000.00--2.00--------------
.......................................................................................................................................................................................CATGTCCTCACTTGCAGTA................................................ 191.000.00------1.00----------
............................................................................................................................................................................AGTGAGGACATGGGCCGGGGAGC....................................................... 2311.001.00--------1.00--------
......................................................................TTCAGGACCAAACTG..................................................................................................................................................................... 1590.330.33---0.33-------------