uc001out.2_intron_11_0_chr11_73796016

GTGAGACCCTGCCAAAAAAAAAAAAAAATGAAGGCATTCAGGCTTTGATTGGGGCATGAGCAAGAGCAAGATAATCTCTAATGCATTTTACAAAACTAAGATTTAGTGCATATAAGGGGAGGGTTGTGTGGATATACTGTAAACTAGCCCCTTGATGAATAGACCATCAAATAATTTTTCTTTTTTGCTTGATTTAACAGCAAGTGATATAATCAGTATTGAGTCATGCAAAGAGTATCTGCTTGGAGTA
............................................((((.(((.((((..(((((((.........))))..))).(((((......)))))....))))...(((((((..((((..(((....)))....))))..))))))).........))))))).............(((((.((......)))))))..............................................
............................................45...............................................................................................................................................................206..........................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR189782

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189784

SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189785

SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)

DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)

SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)

SRR189783

SRR037937(GSM510475)
293cand2. (cell line)

TAX577741(Rovira)
total RNA. (breast)

SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)

SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)

......................................................................................................................................................................................TTTTGCTTGATTTAACCATG................................................

18.00

0.00

15.00

2.00

1.00

6.00

0.00

4.00

2.00

4.00

0.00

1.00

3.00

4.00

0.00

4.00

.................................................TGGGGCATGAGCAAGAGCAAGATA.................................................................................................................................................................................

3.00

2.00

0.00

1.00

..........................................................................................................................................................................ATAATTTTTCTTTTTTGCTATT..........................................................

2.00

0.00

2.00

0.00

1.00

......................................................................................................................................................................................TTTTGCTTGATTTAACC...................................................

1.00

0.00

1.00

..............................................................................................................................................................................TTTTTCTTTTTTGCTTCTCC........................................................

1.00

0.00

1.00

0.00

1.00

.......................................................................................................................................................................CAAATAATTTTTCTTTCTG................................................................

1.00

0.00

1.00

0.00

1.00

...............................................................................................................................GTGGATATACTGTAAACTAGCCCCTTGATGAATAGACCATCAAATAATTTTTCTTTTTTGCTTGATTTAACAG..................................................

1.00

.......................................................................................................................................................................CAAATAATTTTTCTTTTGGG...............................................................

1.00

0.00

1.00

......................................................................................................................................................................................TTTTGCTTGATTTAACCCCT................................................

1.00

0.00

1.00

......................................................................................................................................................................................TTTTGCTTGATTTAAACAT.................................................

1.00

0.00

1.00

......................................................................................................................................................................................TTTTGCTTGATTTAACCTTG................................................

1.00

0.00

1.00

0.00

1.00

......................................................................................................................................................................................TTTTGCTTGATTTAACAACG................................................

1.00

0.00

1.00

......................................................................................................................................................................................TTTTGCTTGATTTAACGATG................................................

1.00

0.00

1.00

...................................................................................................................................................CCCCTTGATGAATAGAGGTT...................................................................................

1.00

0.00

1.00

.........................................................................................................................GGTTGTGTGGATATACTGTAAACTAGCC.....................................................................................................

1.00

........................................GGCTTTGATTGGGGCGGGT...............................................................................................................................................................................................

1.00

0.00

1.00

......................................................................................................................................................................................TTTTGCTTGATTTAACAAAG................................................

1.00

0.00

1.00

.....................................................................................................................................ATACTGTAAACTAGC......................................................................................................

0.17

Size

Perfect hit

Total Norm

Perfect Norm

SRR189782

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189784

SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189785

SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)

DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)

SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)

SRR189783

SRR037937(GSM510475)
293cand2. (cell line)

TAX577741(Rovira)
total RNA. (breast)

SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)

SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)

.............AAAAAAAAAAAAAAATGAAGGAG......................................................................................................................................................................................................................

4.00

0.00

3.00

1.00

..............AAAAAAAAAAAAAATGACGGC.......................................................................................................................................................................................................................

3.00

0.00

1.00

2.00

..........GCCAAAAAAAAAAAAAAATGAATAG.......................................................................................................................................................................................................................

3.00

0.00

1.00

..............AAAAAAAAAAAAAATGAACGGC......................................................................................................................................................................................................................

3.00

0.00

3.00

..............AAAAAAAAAAAAAATGAAGGAG......................................................................................................................................................................................................................

3.00

0.00

2.00

1.00

........CTGCCAAAAAAAAAAAAAAATGAAAG........................................................................................................................................................................................................................

2.00

0.00

2.00

.................AAAAAAAAAAATGAAGGCTTG....................................................................................................................................................................................................................

2.00

0.00

2.00

..........GCCAAAAAAAAAAAAAAATGAATAAA......................................................................................................................................................................................................................

1.00

0.00

1.00

..............AAAAAAAAAAAAAATGAAGGAAAG....................................................................................................................................................................................................................

1.00

0.00

1.00

...............AAAAAAAAAAAAATGAAGGCAAG....................................................................................................................................................................................................................

1.00

0.00

1.00

..........GCCAAAAAAAAAAAAAAATGAATAGA......................................................................................................................................................................................................................

1.00

0.00

1.00

.............AAAAAAAAAAAAAAATGAAGGCTAG....................................................................................................................................................................................................................

1.00

0.00

1.00

.......CCTGCCAAAAAAAAAAAAAAATACC..........................................................................................................................................................................................................................

1.00

0.00

1.00

.......CCTGCCAAAAAAAAAAAAAACCCC...........................................................................................................................................................................................................................

1.00

0.00

1.00

.............AAAAAAAAAAAAAAATGAAGCTAG.....................................................................................................................................................................................................................

1.00

0.00

1.00

.....ACCCTGCCAAAAAAAAAAAAAAATTCC..........................................................................................................................................................................................................................

1.00

0.00

1.00

..............AAAAAAAAAAAAAATGAAGGCG......................................................................................................................................................................................................................

1.00

0.00

1.00

..GAGACCCTGCCAAAAAAAAAAATC................................................................................................................................................................................................................................

1.00

0.00

1.00

.............AAAAAAAAAAAAAAATGAAGCG.......................................................................................................................................................................................................................

1.00

0.00

1.00

.............AAAAAAAAAAAAAAATGAAGAGG......................................................................................................................................................................................................................

1.00

0.00

1.00

.............AAAAAAAAAAAAAAATGAAGAATT.....................................................................................................................................................................................................................

1.00

0.00

1.00

................AAAAAAAAAAAATGAAGGGTTC....................................................................................................................................................................................................................

1.00

0.00

1.00

..........GCCAAAAAAAAAAAAAAATCGGC.........................................................................................................................................................................................................................

1.00

0.00

1.00

..............AAAAAAAAAAAAAATGACTTA.......................................................................................................................................................................................................................

1.00

0.00

1.00

........................................................TGAGCAAGAGCAAGAAGCT...............................................................................................................................................................................

1.00

0.00

1.00

.......CCTGCCAAAAAAAAAAAAAAACTTT..........................................................................................................................................................................................................................

1.00

0.00

1.00

.............AAAAAAAAAAAAAAATGAAGGCACG....................................................................................................................................................................................................................

1.00

0.00

1.00

...AGACCCTGCCAAAAAAAAAAAAAAATCC...........................................................................................................................................................................................................................

1.00

0.00

1.00

..............AAAAAAAAAAAAAATGAAGGCTTG....................................................................................................................................................................................................................

1.00

0.00

1.00

...........................................................................................................................................................................................................................TGAGTCATGCAAAGAGTCATG..........

1.00

0.00

1.00

.........TGCCAAAAAAAAAAAAAAATCTTC.........................................................................................................................................................................................................................

1.00

0.00

1.00

.............AAAAAAAAAAAAAAATGAAGCAT......................................................................................................................................................................................................................

1.00

0.00

1.00

.....ACCCTGCCAAAAAAAAAAAAAAGGTG...........................................................................................................................................................................................................................

1.00

0.00

1.00

.......CCTGCCAAAAAAAAAAAAAAATATT..........................................................................................................................................................................................................................

1.00

0.00

1.00

.........TGCCAAAAAAAAAAAAAAATTGCG.........................................................................................................................................................................................................................

1.00

0.00

1.00

............CCTTCATTTTTTTTTTTTTTTG........................................................................................................................................................................................................................

0.50

0.25

0.12