| (1) B-CELL | (2) BRAIN | (6) BREAST | (8) CELL-LINE | (9) CERVIX | (1) FIBROBLAST | (1) HEART | (1) HELA | (3) LIVER | (2) OTHER | (1) XRN.ip |
| AGACCCTGATGGCCAAGGAGTCCACCCAGGGCCACCGGAGCTATTTGCTGGTATGAGAAGGACACCCTCCTCCCCCTCACAGCCCAGATACCCTTCCCGCACAGACAAAGTGAAAACGTGGGTGTGGGTTCAAATCCTGACTCACCCAGTCTGCAGTCTTAGACATGAGGTTCGTCAACCTTCTTTAGCCTCAGTTTCCCTGTCTGTAAATCAAGCACTTCAACAACAACAGCATGTCTTATAGGGTTGT ....................................................................................(((........(((((((...((..((....)).)).)))))))........))).........(((((......)))))...................................................................................... ..................................................................................83.................................................................................166.................................................................................. | Size | Perfect hit | Total Norm | Perfect Norm | GSM532880(GSM532880) G659T. (cervix) | GSM532876(GSM532876) G547T. (cervix) | SRR039636(GSM518473) THP1_cyto_sRNAs. (cell line) | SRR037876(GSM522374) fibroblasts_cell_culture. (fibroblast) | SRR189784 | SRR189782 | GSM532874(GSM532874) G699T. (cervix) | SRR029128(GSM416757) H520. (cell line) | SRR039635(GSM518472) THP1_nuc_sRNAs. (cell line) | SRR060169(GSM565979) 5-8F_cytoplasm. (cell line) | TAX577743(Rovira) total RNA. (breast) | SRR039621(GSM531984) HBV(+) HCC Tissue Sample 2. (liver) | SRR040040(GSM532925) G612N. (cervix) | SRR015446(SRR015446) smallRNAs high-throughput sequencing Total. (breast) | SRR039620(GSM531983) HBV(+) Adjacent Tissue Sample 2. (liver) | TAX577746(Rovira) total RNA. (breast) | SRR040011(GSM532896) G529T. (cervix) | SRR040036(GSM532921) G243N. (cervix) | GSM532881(GSM532881) G696N. (cervix) | SRR191406(GSM715516) 67genomic small RNA (size selected RNA from t. (breast) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR191416(GSM715526) 34genomic small RNA (size selected RNA from t. (breast) | TAX577590(Rovira) total RNA. (breast) | GSM450610(GSM450610) miRNA sequencing raw reads from post-mortem s. (brain) | SRR040038(GSM532923) G531N. (cervix) | SRR342900(SRX096796) small RNA seq of Right atrial tissue. (heart) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | GSM450599(GSM450599) miRNA sequencing raw reads from post-mortem s. (brain) | SRR033728(GSM497073) MALT (MALT413). (B cell) | SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line) | SRR040035(GSM532920) G001T. (cervix) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207119(GSM721081) XRN1&2 knockdown. (XRN1/XRN2 cell line) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................ATACCCTTCCCGCACTACC................................................................................................................................................ | 19 | 31.00 | 0.00 | 14.00 | 6.00 | 5.00 | - | - | - | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| .......................................................................................ATACCCTTCCCGCACTAC................................................................................................................................................. | 18 | 6.00 | 0.00 | 1.00 | - | 3.00 | - | - | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................ATACCCTTCCCGCACTA.................................................................................................................................................. | 17 | 6.00 | 0.00 | 2.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................ATACCCTTCCCGCACTACA................................................................................................................................................ | 19 | 4.00 | 0.00 | 3.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................ATACCCTTCCCGCACTCCC................................................................................................................................................ | 19 | 3.00 | 0.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................ATACCCTTCCCGCACTATC................................................................................................................................................ | 19 | 2.00 | 0.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................GATACCCTTCCCGCACTACC................................................................................................................................................ | 20 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................TCACCCAGTCTGCAGTCGTTT........................................................................................ | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................ATACCCTTCCCGCACTCAC................................................................................................................................................ | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................ATACCCTTCCCGCACTAAC................................................................................................................................................ | 19 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................ATACCCTTCCCGCACAACCA............................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................CCCTCCTCCCCCTCACTG........................................................................................................................................................................ | 18 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................ATACCCTTCCCGCACGTCC................................................................................................................................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................AATCAAGCACTTCAACAACAAA.................... | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| .......................................................................................ATACCCTTCCCGCACTCC................................................................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................GATACCCTTCCCGCACTA.................................................................................................................................................. | 18 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................AGGGCCACCGGAGCTATTTG........................................................................................................................................................................................................... | 20 | 9 | 0.11 | 0.11 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.11 |
| AGACCCTGATGGCCAAGGAGTCCACCCAGGGCCACCGGAGCTATTTGCTGGTATGAGAAGGACACCCTCCTCCCCCTCACAGCCCAGATACCCTTCCCGCACAGACAAAGTGAAAACGTGGGTGTGGGTTCAAATCCTGACTCACCCAGTCTGCAGTCTTAGACATGAGGTTCGTCAACCTTCTTTAGCCTCAGTTTCCCTGTCTGTAAATCAAGCACTTCAACAACAACAGCATGTCTTATAGGGTTGT ....................................................................................(((........(((((((...((..((....)).)).)))))))........))).........(((((......)))))...................................................................................... ..................................................................................83.................................................................................166.................................................................................. | Size | Perfect hit | Total Norm | Perfect Norm | GSM532880(GSM532880) G659T. (cervix) | GSM532876(GSM532876) G547T. (cervix) | SRR039636(GSM518473) THP1_cyto_sRNAs. (cell line) | SRR037876(GSM522374) fibroblasts_cell_culture. (fibroblast) | SRR189784 | SRR189782 | GSM532874(GSM532874) G699T. (cervix) | SRR029128(GSM416757) H520. (cell line) | SRR039635(GSM518472) THP1_nuc_sRNAs. (cell line) | SRR060169(GSM565979) 5-8F_cytoplasm. (cell line) | TAX577743(Rovira) total RNA. (breast) | SRR039621(GSM531984) HBV(+) HCC Tissue Sample 2. (liver) | SRR040040(GSM532925) G612N. (cervix) | SRR015446(SRR015446) smallRNAs high-throughput sequencing Total. (breast) | SRR039620(GSM531983) HBV(+) Adjacent Tissue Sample 2. (liver) | TAX577746(Rovira) total RNA. (breast) | SRR040011(GSM532896) G529T. (cervix) | SRR040036(GSM532921) G243N. (cervix) | GSM532881(GSM532881) G696N. (cervix) | SRR191406(GSM715516) 67genomic small RNA (size selected RNA from t. (breast) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR191416(GSM715526) 34genomic small RNA (size selected RNA from t. (breast) | TAX577590(Rovira) total RNA. (breast) | GSM450610(GSM450610) miRNA sequencing raw reads from post-mortem s. (brain) | SRR040038(GSM532923) G531N. (cervix) | SRR342900(SRX096796) small RNA seq of Right atrial tissue. (heart) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | GSM450599(GSM450599) miRNA sequencing raw reads from post-mortem s. (brain) | SRR033728(GSM497073) MALT (MALT413). (B cell) | SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line) | SRR040035(GSM532920) G001T. (cervix) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207119(GSM721081) XRN1&2 knockdown. (XRN1/XRN2 cell line) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................ACACCCTCCTCCCCCTATAG......................................................................................................................................................................... | 20 | 4.00 | 0.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................ACACCCTCCTCCCCCTGTGG......................................................................................................................................................................... | 20 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................................................CAACAACAGCATGTCTCTGT....... | 20 | 2.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................ACACCCTCCTCCCCCTATA.......................................................................................................................................................................... | 19 | 2.00 | 0.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................ACACCCTCCTCCCCCGGTG.......................................................................................................................................................................... | 19 | 2.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................AAGCACTTCAACAACAACAGCAAA.............. | 24 | 2.00 | 0.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................CCTCACAGCCCAGATACTG............................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ...............................................................ACCCTCCTCCCCCTCAATAG....................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................ACACCCTCCTCCCCCTGGTG......................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............CAAGGAGTCCACCCATCC........................................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| ................GGAGTCCACCCAGGGCCACCGGAGCTATTCTGG......................................................................................................................................................................................................... | 33 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................................................CAACAACAGCATGTCTCTG........ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................ACACCCTCCTCCCCCTATAT......................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................ACACCCTCCTCCCCCGTTG.......................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................GACACCCTCCTCCCCCATGG.......................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................ACACCCTCCTCCCCCGTAA.......................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................CCTTCTTTAGCCTCAGTTTCCCTAT............................................... | 25 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| .............................................................ACACCCTCCTCCCCCGGGG.......................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| .............................................................ACACCCTCCTCCCCCTAATG......................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................TTCTTTAGCCTCAGTCCC.................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| .............................................................ACACCCTCCTCCCCCTAGAT......................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................ACACCCTCCTCCCCCTCAAGAT....................................................................................................................................................................... | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| .............................................................ACACCCTCCTCCCCCTAAAG......................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................................................CAACAACAGCATGTCCTG......... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................................................CAACAACAGCATGTCTCTGA....... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................GGGCTGTGAGGGGGAGGAGGGTGTCC..................................................................................................................................................................... | 26 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - |