ID: uc001opq.1_intron_7_0_chr11_70183534_f.5p
GENE: PPFIA1(8)
chr11:70183484-70183733+


(1)
BRAIN 		(1)
BREAST 		(13)
CELL-LINE 		(2)
HEART 		(4)
HELA 		(1)
KIDNEY 		(2)
LIVER 		(1)
OTHER 		(7)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
GAGAAGTTGAAAGTGCAAAAAAGCAGTTAGAAGAAACACAACACGATAAGGTACTGAAATCTTCTCTAAATCCATGAAGAGCCAAGTTGAACTGAGTTGATGATGATGATAGTTACTGCAGATGTCTGACAGTGGAGAGCAGCTTGGTTTGTGGCTCTCATAGTCCACTGCCATAAGTTTCTAGCACTCTCAGGCTTGTATGTTGAATGCCTTTGTATTTCAGGTGATTTTGAGTCTGGCTATGCATATG
...............................................................((((..........))))....((..(((((.(((......)))..)))))...))...................................................................................................................................
...............................................................64............................................................126..........................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR037935(GSM510473)
293cand3. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR343337TAX577743(Rovira)
total RNA. (breast)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................................................................GATGATGATGATAGTTACTGCAGATGTCTGACA.......................................................................................................................33199.0099.0076.009.006.001.00-2.00-2.00--------1.00-1.00---------1.00--------
...................................................................................................ATGATGATGATAGTTACTGCAGATGTCTGACA.......................................................................................................................3213.003.003.00------------------------------------
.....................................................................................................................GCAGATGTCTGACAGTGGAGAGCAGCT..........................................................................................................2712.002.00------2.00------------------------------
..................................................................................................GATGATGATGATAGTTACTGCAGATGTCTG..........................................................................................................................3012.002.00-1.00---1.00-------------------------------
.............................................................................................................................................................................................TCAGGCTTGTATGTTGAATGA........................................212.000.00----2.00--------------------------------
..................................................................................................GATGATGATGATAGTTACTGCAGATGTCTGAC........................................................................................................................3212.002.002.00------------------------------------
.................................................................................................TGATGATGATGATAGTTACTGCAGATGTCTGACA.......................................................................................................................3412.002.002.00------------------------------------
.......................................................................................................TGATGATAGTTACTGCAGA................................................................................................................................1911.001.00-----------------------------1.00-------
.....................................................................ATCCATGAAGAGCCAAGTTGAACTGAGTTGATGATG.................................................................................................................................................3611.001.00-------------1.00-----------------------
.....................................................................ATCCATGAAGAGCCAAGTTGAACTGAGTTGATGATGATGATAGTTACTGCAGATG..............................................................................................................................5511.001.00-----------1.00-------------------------
....................................................................AATCCATGAAGAGCCCTTA...................................................................................................................................................................191.000.00-------------------------1.00-----------
..........................................................................................................TGATAGTTACTGCAGATGTCTGACA.......................................................................................................................2511.001.00----------1.00--------------------------
..................................................................................................GATGATGATGATAGTTACTGCAG.................................................................................................................................2311.001.00--------------------------------1.00----
.......................................................................................................TGATGATAGTTACTGCAGATGTCTGA.........................................................................................................................2611.001.00--------------------------1.00----------
.........................................................................................................................ATGTCTGACAGTGGAGAGC..............................................................................................................1911.001.00---------------------------------1.00---
.........................................................................................................................ATGTCTGACAGTGGAGAGCAGCTTGGTCTG...................................................................................................301.000.00------------------------1.00------------
.................AAAAAGCAGTTAGAAGAAACATA..................................................................................................................................................................................................................231.000.00------------1.00------------------------
....................................................................AATCCATGAAGAGCCAAG....................................................................................................................................................................1811.001.00---------------1.00---------------------
..................................................................................................GATGATGATGATAGTTACTGCA..................................................................................................................................2211.001.00---1.00---------------------------------
....................AAGCAGTTAGAAGAAACAC...................................................................................................................................................................................................................1911.001.00--------1.00----------------------------
...................................ACACAACACGATAAGGTACTGAAATC.............................................................................................................................................................................................2611.001.00-----------1.00-------------------------
........................................................................CATGAAGAGCCAAGTTGAACTGAGTTGATGA...................................................................................................................................................3111.001.00--------------------1.00----------------
...................................................................................................................CTGCAGATGTCTGACAGTGGAGAGCAG............................................................................................................2711.001.00------------------------------1.00------
...........AGTGCAAAAAAGCAGTTAGAAGAAACAC...................................................................................................................................................................................................................2811.001.00-------------------------------1.00-----
......................................................................................................................................................................................................................................TGAGTCTGGCTATGCATATG2011.001.00--------1.00----------------------------
.....................................................................ATCCATGAAGAGCCAAGTTGAACTG............................................................................................................................................................2511.001.00-----------------1.00-------------------
............................................................................................................................................AGCTTGGTTTGTGGCTCGTA..........................................................................................201.000.00-----------------------------------1.00-
..................................................................................................GATGATGATGATAGTTACTGCAGA................................................................................................................................2411.001.00---1.00---------------------------------
..................AAAAGCAGTTAGAAGAAACACA..................................................................................................................................................................................................................2211.001.00------------1.00------------------------
...........................................................................................................................................................................................................................TCAGGTGATTTTGAGTCTGA...........201.000.00----------------------1.00--------------
.....................................................................ATCCATGAAGAGCCAAGTTGAACTGAGT.........................................................................................................................................................2811.001.00----------1.00--------------------------
..................AAAAGCAGTTAGAAGAAACAC...................................................................................................................................................................................................................2111.001.00---------------------------1.00---------
.................AAAAAGCAGTTAGAAGAAACACA..................................................................................................................................................................................................................2311.001.00-----------------------1.00-------------
..........AAGTGCAAAAAAGCAGTAAGA...........................................................................................................................................................................................................................211.000.00----------------------------------1.00--
................................................................................................................TTACTGCAGATGTCTGACA.......................................................................................................................1911.001.00----1.00--------------------------------
.................................................................................CCAAGTTGAACTGAG..........................................................................................................................................................1550.200.20------------------------------------0.20

Antisense strand
GAGAAGTTGAAAGTGCAAAAAAGCAGTTAGAAGAAACACAACACGATAAGGTACTGAAATCTTCTCTAAATCCATGAAGAGCCAAGTTGAACTGAGTTGATGATGATGATAGTTACTGCAGATGTCTGACAGTGGAGAGCAGCTTGGTTTGTGGCTCTCATAGTCCACTGCCATAAGTTTCTAGCACTCTCAGGCTTGTATGTTGAATGCCTTTGTATTTCAGGTGATTTTGAGTCTGGCTATGCATATG
...............................................................((((..........))))....((..(((((.(((......)))..)))))...))...................................................................................................................................
...............................................................64............................................................126..........................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR037935(GSM510473)
293cand3. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR343337TAX577743(Rovira)
total RNA. (breast)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................TAAGGTACTGAAATCCAC.......................................................................................................................................................................................... 181.000.00-------------------1.00-----------------
.........................GTTAGAAGAAACACAACCTG............................................................................................................................................................................................................. 201.000.00--------------1.00----------------------
.............................................ATAAGGTACTGAAATCAC........................................................................................................................................................................................... 181.000.00---------1.00---------------------------
....AGTTGAAAGTGCAAAAGTG................................................................................................................................................................................................................................... 191.000.00---------1.00---------------------------
.................................................................................................TGATGATGATGATAGTCAAA..................................................................................................................................... 201.000.00---------------------1.00---------------
.........................................................ATGGATTTAGAGAAGATT............................................................................................................................................................................... 1820.500.50------0.50------------------------------