ID: uc001one.2_intron_16_0_chr11_67817534_f
GENE: (17)
chr11:67817484-67817653+


(1)
AGO3.ip 		(9)
B-CELL 		(1)
BRAIN 		(9)
BREAST 		(19)
CELL-LINE 		(2)
HELA 		(8)
LIVER 		(2)
OTHER 		(12)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
GCTCCGATGAGGAAAAGGCAGGGGGCCTGGATGATGAAGAGGAGGCCGAGGTGGGTGCAGTGCCTTCCTGGGGGTGGGACGGCTGAGGCCCTGCCGGCCCTCACTGCACCCGCCCCGCAGCTCGTCCCCTCCGAGGTGCTCATGCACCAGGCCATCCACACCATCGAGTT
...................................................................(((((((((((.(((.(((((.((....)).))))))))..)))))))).)))..................................................
.............................................................62........................................................120................................................
SizePerfect hitTotal NormPerfect NormDRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189785SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR038858(GSM458541)
MEL202. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)
..................................................................CCTGGGGGTGGGACGGC.......................................................................................1714.004.00-------2.001.00-------1.00--------------------------------------------------
...................................GAAGAGGAGGCCGAGTGG.....................................................................................................................184.000.00-----------------2.00-----1.00-----------------------------------1.00-------
....................................................................TGGGGGTGGGACGGCTGAGGCCC...............................................................................2313.003.001.00---------------1.00------------------------------1.00-------------------
....................................................................TGGGGGTGGGACGGCTGAGGCC................................................................................2213.003.00--1.00----------------------------1.00--------1.00--------------------------
.................................................................TCCTGGGGGTGGGACGGCTGAGG..................................................................................2313.003.00--1.00----------------------1.00-------1.00---------------------------------
....................................................................TGGGGGTGGGACGGCTGAGAAAA...............................................................................2313.001.00-3.00-----------------------------------------------------------------
....................................................................TGGGGGTGGGACGGCTGAGGC.................................................................................2113.003.00----1.00----1.00--------------------------1.00------------------------------
....................................................................TGGGGGTGGGACGGCTGAGGCCCT..............................................................................2413.003.00---3.00---------------------------------------------------------------
....................................................................TGGGGGTGGGACGGCTGAGGCCTT..............................................................................2412.003.00---------------1.00--------1.00------------------------------------------
...................................................................CTGGGGGTGGGACGGC.......................................................................................1622.002.00-------0.50----------0.50-------------------------------------------0.50-0.50--
....................................................................TGGGGGTGGGACGGCTGAGGCCT...............................................................................2312.003.00-----------1.00----------------------------------------------1.00--------
....................................................................TGGGGGTGGGACGGCTGAGG..................................................................................2012.002.00------1.00-------1.00----------------------------------------------------
...................................................................CTGGGGGTGGGACGGCTGAGGCCT...............................................................................242.000.00-------------1.00----------------------------------------------1.00------
........................GCCTGGATGATGAAGAGGAGG.............................................................................................................................2112.002.00---------1.00---------------------------------------------------1.00-----
...........................TGGATGATGAAGAGGAGGCCGAGCT......................................................................................................................252.000.00-----2.00-------------------------------------------------------------
....................................................................TGGGGGTGGGACGGCTGAGGCCCATT............................................................................2611.003.00------1.00------------------------------------------------------------
........GAGGAAAAGGCAGGGGGCC...............................................................................................................................................1911.001.00----------1.00--------------------------------------------------------
...................................................TGGGTGCAGTGCCTTTC......................................................................................................171.000.00---------------1.00---------------------------------------------------
....................................................................TGGGGGTGGGACGGCTGAA...................................................................................1911.001.00-------------------------------------1.00-----------------------------
....................................................................TGGGGGTGGGACGGCTGAGGAAA...............................................................................2311.002.00----1.00--------------------------------------------------------------
....................................................................TGGGGGTGGGACGGCTGAG...................................................................................1911.001.00----------------------------------1.00--------------------------------
...............AGGCAGGGGGCCTGGATG.........................................................................................................................................1811.001.00-------------------------------------------------1.00-----------------
........................GCCTGGATGATGAAGATGG...............................................................................................................................191.000.00------------------------------1.00------------------------------------
.................................................................................................CCCTCACTGCACCCGCCCCGCAG..................................................2311.001.001.00------------------------------------------------------------------
....................................................................TGGGGGTGGGACGGCTGA....................................................................................1811.001.00-----------1.00-------------------------------------------------------
......................................................................GGGGTGGGACGGCTGAGGC.................................................................................1911.001.00-------------------1.00-----------------------------------------------
.........................CCTGGATGATGAAGAGGA...............................................................................................................................1811.001.00--------------------------------------1.00----------------------------
.................................................................................................CCCTCACTGCACCCGCCCCGCA...................................................2211.001.00-------------------------------------------------------1.00-----------
.................................................................TCCTGGGGGTGGGACGGC.......................................................................................1811.001.00--------1.00----------------------------------------------------------
....................................................................................................TCACTGCACCCGCCCTGT....................................................181.000.00--------------------------------------------1.00----------------------
....................................................................TGGGGGTGGGACGGCTGAGA..................................................................................2011.001.00----------------------1.00--------------------------------------------
.......TGAGGAAAAGGCAGGGGGCCTGG............................................................................................................................................2311.001.00----------1.00--------------------------------------------------------
........................GCCTGGATGATGAAGAGGAGGCCGAG........................................................................................................................2611.001.001.00------------------------------------------------------------------
.........................CCTGGATGATGAAGAGGAGGCCGA.........................................................................................................................2411.001.00------------1.00------------------------------------------------------
.....................GGGGCCTGGATGATGAAGAG.................................................................................................................................2011.001.00-----------------------------------1.00-------------------------------
.........................CCTGGATGATGAAGATGGT..............................................................................................................................191.000.00----------------------------------------------1.00--------------------
.................................................................TCCTGGGGGTGGGACGGCTGAGAAT................................................................................251.000.00-----------------------------------------------------1.00-------------
..........................CTGGATGATGAAGAGGAGGCCG..........................................................................................................................2211.001.00--------------------------------1.00----------------------------------
..................................................................CCTGGGGGTGGGACGGCTGAGG..................................................................................2211.001.00--1.00----------------------------------------------------------------
...................................GAAGAGGAGGCCGAGTGGT....................................................................................................................191.000.00---------------------------------------------------------1.00---------
.........................CCTGGATGATGAAGATGGG..............................................................................................................................191.000.00-----------------------------------------1.00-------------------------
..................................................................................................CCTCACTGCACCCGCCTATG....................................................201.000.00--------------------1.00----------------------------------------------
.................................................................TCCTGGGGGTGGGACGGCTGAGGAA................................................................................2511.003.00------------------------------------------1.00------------------------
.........................CCTGGATGATGAAGAAAAA..............................................................................................................................191.000.00------------------------------------------------1.00------------------
....................................................................TGGGGGTGGGACGGCTGAGGCAA...............................................................................2311.003.00---------------------------------------------1.00---------------------
................................GATGAAGAGGAGGCCGAGCTC.....................................................................................................................211.000.00--------------------------1.00----------------------------------------
....................................................................TGGGGGTGGGACGGCTGAGGCA................................................................................2211.003.00--------------------------------------------------------1.00----------
....................................................................TGGGGGTGGGACGGCTGAGGCCCAAT............................................................................2611.003.00------------1.00------------------------------------------------------
....................................................................................................TCACTGCACCCGCCCCGCAGTT................................................221.000.00-------------1.00-----------------------------------------------------
.....................................................................GGGGGTGGGACGGCTGAGGCCCAA.............................................................................241.000.001.00------------------------------------------------------------------
.................................................................TCCTGGGGGTGGGACGGCTG.....................................................................................2011.001.00-----------------------------1.00-------------------------------------
...................AGGGGGCCTGGATGATGAAGAGGAGG.............................................................................................................................2611.001.00----1.00--------------------------------------------------------------
.................................................................................................CCCTCACTGCACCCGCCCCGCAGT.................................................2411.001.00--------------1.00----------------------------------------------------
....................................................................................................TCACTGCACCCGCCCCGCAGAAT...............................................231.000.00----------------------------1.00--------------------------------------
....................................................................TGGGGGTGGGACGGCTGAGAAA................................................................................2211.001.00---------------------------1.00---------------------------------------
....................................................................TGGGGGTGGGACGGCTGAGGCCTTT.............................................................................2511.003.00---------------------------------------------------1.00---------------
....................................................................TGGGGGTGGGACGGCTGAGGCAATT.............................................................................2511.003.00---------------------1.00---------------------------------------------
................................GATGAAGAGGAGGCCGAGCT......................................................................................................................201.000.00------------------------------------------------------1.00------------
....................................................................TGGGGGTGGGACGGCTGAGGCAAA..............................................................................2411.003.00------1.00------------------------------------------------------------
....................................................................TGGGGGTGGGACGGCTGAGGCCCAAAA...........................................................................2711.003.00-------------------------------------------1.00-----------------------
..................................................GTGGGTGCAGTGCCTTCCTGGGGGTGGGACGGCTGAGGCCCTGCCGGCCCTCACTGCACCCGCCCCG.....................................................6711.001.00----------------------------------------------------1.00--------------
.................................................................................................CCCTCACTGCACCCGCCCCGCAA..................................................2311.001.00-----1.00-------------------------------------------------------------
...........................TGGATGATGAAGAGGAGGTG...........................................................................................................................2020.500.50-------------------0.50-----------------------------------------------
..................................TGAAGAGGAGGCCGAG........................................................................................................................1620.500.500.50------------------------------------------------------------------
...........................TGGATGATGAAGAGGAGG.............................................................................................................................1820.500.50---------------------------------------------------------------0.50---
..................................................................................................................................................CCAGGCCATCCACACC........1650.200.20------------------------------------------------------------------0.20

Antisense strand
GCTCCGATGAGGAAAAGGCAGGGGGCCTGGATGATGAAGAGGAGGCCGAGGTGGGTGCAGTGCCTTCCTGGGGGTGGGACGGCTGAGGCCCTGCCGGCCCTCACTGCACCCGCCCCGCAGCTCGTCCCCTCCGAGGTGCTCATGCACCAGGCCATCCACACCATCGAGTT
...................................................................(((((((((((.(((.(((((.((....)).))))))))..)))))))).)))..................................................
.............................................................62........................................................120................................................
SizePerfect hitTotal NormPerfect NormDRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189785SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR038858(GSM458541)
MEL202. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)
................................................................................................CGGGGCGGGTGCAGTGAGGGC..................................................... 2111.001.00------------------1.00------------------------------------------------
.................................................................................................CCCTCACTGCACCCGCCGG...................................................... 191.000.00---------------------------------------1.00---------------------------
.....................................CCCACCTCGGCCTCCTCT................................................................................................................... 1821.001.00--------0.50--------------------------------------------------------0.50-
..............................................................................................................................................TGCACCAGGCCATCCACGTGG....... 211.000.00--------------------------------------------------1.00----------------