ID: uc001okr.2
GENE: RAD9A(3)
chr11:67160767-67161016+


(1)
AGO1.ip OTHER.mut 		(4)
AGO2.ip 		(2)
B-CELL 		(3)
BRAIN 		(8)
BREAST 		(25)
CELL-LINE 		(1)
FIBROBLAST 		(5)
HEART 		(2)
HELA 		(3)
LIVER 		(2)
OTHER 		(22)
SKIN 		(1)
XRN.ip

Sense strand
AAGGTAAGCAGGTCTTTCAAGGCATTCCAAGCATAAGGAAGAGCATGAATGAGGCCTAGAAGGATGCCAGTGCCCGAGGTGACGTGGGAGCCCTTTTCCCAGAGTTACATGCTGGGCCCATGATGGGTGTGGGCCTGCATGGGACAGGAGAGCTTGTTGCAGAGATGTGATGCTAGGCTGAGGTGTCTTATCCCATGCAGTCTTTCCTGTCTGTCTTCCGCTCACTGGCGATGCTGGAGAAGACGGTGGA
......................................................................................................................................((((((((((.((((..((((...((..((........))..))..)))).)))).))))))))))..................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR189782SRR029128(GSM416757)
H520. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR037938(GSM510476)
293Red. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR189786GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR189787TAX577739(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR037936(GSM510474)
293cand1. (cell line)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR191492(GSM715602)
154genomic small RNA (size selected RNA from . (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR038858(GSM458541)
MEL202. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
..................................................................................................................................................................................TGAGGTGTCTTATCCCATGCAGT.................................................23126.0026.00-6.001.00---3.001.00-2.00-1.001.00--1.00----------1.00--1.00---1.00-----1.00----------------------1.00--1.001.001.00-----1.001.00--
.......................................................................................................................................TGCATGGGACAGGAGAGCTTGTTGC..........................................................................................25116.0016.00----------1.00---------2.00-1.00-2.00--1.00--1.001.001.00-----------1.00-1.00---1.00----1.00---1.00----------1.00------
.......................................................................................................................................TGCATGGGACAGGAGAGCTTGTT............................................................................................23111.0011.006.00------------1.00--------1.002.00---------------------1.00-------------------------------
......................................................................................................................................CTGCATGGGACAGGAGAGCTTGTT............................................................................................2419.009.007.00---------1.00---------------------------------------------1.00--------------------
.......................................................................................................................................TGCATGGGACAGGAGAGCTTGTTG...........................................................................................2419.009.001.00-----------1.00--------2.00-------------1.00-1.00--1.00------1.00---1.00-------------------------
..................................................................................................................................................................................TGAGGTGTCTTATCCCATGCAG..................................................2218.008.001.00-1.00--------------1.00--------------------1.00------------------1.00---1.00-------1.00--1.00----
..................................................................................................................................................................................TGAGGTGTCTTATCCCATGCAGA.................................................2317.008.00-------3.004.00--------------------------------------------------------------------
.......................................................................................................................................TGCATGGGACAGGAGAGCTTGTTGT..........................................................................................2515.009.003.00------------------2.00---------------------------------------------------------
...................................................................................................................................................................................GAGGTGTCTTATCCCATGCAGA.................................................2214.003.004.00----------------------------------------------------------------------------
.....................................................................................................................................CCTGCATGGGACAGGAGAGCTTGTTGC..........................................................................................2713.003.00---3.00-------------------------------------------------------------------------
............................................................................................................................................GGGACAGGAGAGCTTGTTGC..........................................................................................2013.003.00----3.00------------------------------------------------------------------------
...................................................................................................................................................................................GAGGTGTCTTATCCCATGCAG..................................................2113.003.00-----------2.00--------------------------------------------------------1.00--------
..................................................................................................................................................................................TGAGGTGTCTTATCCCATGCATT.................................................232.000.00---------------1.00------------------------------------------1.00------------------
..................................................................................................................................................................................TGAGGTGTCTTATCCCATGCAGTAT...............................................2512.0026.00----------------2.00------------------------------------------------------------
.....................................................................................................................................CCTGCATGGGACAGGAGAGCTT...............................................................................................2212.002.00------------------------------------1.00-----1.00----------------------------------
.....................................................................................................................................................................................GGTGTCTTATCCCATGCAGTTT...............................................2212.001.00----1.00-----------------------------1.00------------------------------------------
...................................................................................................................................................................GATGTGATGCTAGGCTGAG....................................................................1912.002.00---2.00-------------------------------------------------------------------------
..................................................................................................................................................................AGATGTGATGCTAGGCTGA.....................................................................1912.002.00-----2.00-----------------------------------------------------------------------
..........................................................................CGAGGTGACGTGGGAGCCCT............................................................................................................................................................2012.002.00-----2.00-----------------------------------------------------------------------
.....................................................................................................................................CCTGCATGGGACAGGAGAG..................................................................................................1911.001.00-----------------------------------------------------------------------1.00-----
......AGCAGGTCTTTCAAGGCATGTAA.............................................................................................................................................................................................................................231.000.00--------------1.00--------------------------------------------------------------
......................................................................................................................................CTGCATGGGACAGGAGAGCTTGTTT...........................................................................................2511.009.00-------------1.00---------------------------------------------------------------
...................................................................................................................................................................................GAGGTGTCTTATCCCATG.....................................................1811.001.00--1.00--------------------------------------------------------------------------
..................................................................................................................................................................................TGAGGTGTCTTATCCCATG.....................................................1911.001.00--1.00--------------------------------------------------------------------------
.........................................................................................................................................CATGGGACAGGAGAGCTTGTTGC..........................................................................................2311.001.00-----------------1.00-----------------------------------------------------------
..................................................................................................................................................................................TGAGGTGTCTTATCCCATGCATTT................................................241.000.00-------------------------------------------------1.00---------------------------
......................................................................................................................................CTGCATGGGACAGGAGAGCTTGTTAA..........................................................................................2611.009.00-----------------------------------------1.00-----------------------------------
......................................................................................................................................CTGCATGGGACAGGAGAGCTTGTTGCAAT.......................................................................................291.000.00-------------------------------------------1.00---------------------------------
................................................................................................................................................................AGAGATGTGATGCTATTTG.......................................................................191.000.00------------------1.00----------------------------------------------------------
..................................................................................................................................................................................TGAGGTGTCTTATCCCATGCACT.................................................231.000.00--------------1.00--------------------------------------------------------------
...............................................................................................................................................................................................................................ACTGGCGATGCTGGAGA..........1711.001.00------------------------------------------------1.00----------------------------
..................................................................................................................................................................................TGAGGTGTCTTATCCCATGCAT..................................................221.000.00------1.00----------------------------------------------------------------------
........................................................TAGAAGGATGCCAGTATTG...............................................................................................................................................................................191.000.00----------------------------1.00------------------------------------------------
......................................................................................................................................CTGCATGGGACAGGAGAGC.................................................................................................1911.001.00----------1.00------------------------------------------------------------------
......................................................................................................................................CTGCATGGGACAGGAGAGCTTGAT............................................................................................241.000.00-----------------------------------------------------1.00-----------------------
...................................................................................................................................................................................GAGGTGTCTTATCCCATGCAGT.................................................2211.001.00------------------------------------------------------1.00----------------------
.....................................................................................................................................................................................GGTGTCTTATCCCATGCAGT.................................................2011.001.00------------------------------------------------------------1.00----------------
.......................................................................................................................................TGCATGGGACAGGAGAGCTTGGT............................................................................................231.000.001.00----------------------------------------------------------------------------
.....................................................................................................................................................................TGTGATGCTAGGCTGAGGTGT................................................................2111.001.00---------1.00-------------------------------------------------------------------
.......................................................................................................................................TGCATGGGACAGGAGAGCTTGTCGC..........................................................................................2511.001.00---------1.00-------------------------------------------------------------------
....................................................................................................................................................................................AGGTGTCTTATCCCATGCAGT.................................................2111.001.00---------------------------------------------------------------1.00-------------
..................................................................................................................................................................................TGAGGTGTCTTATCCCATGCCGT.................................................231.000.00------------------1.00----------------------------------------------------------
.......................................................................................................................................TGCATGGGACAGGAGAGCTTGTTT...........................................................................................2411.0011.001.00----------------------------------------------------------------------------
.....................................................................................................................................CCTGCATGGGACAGGAGAGCTTT..............................................................................................2311.002.00----------------------------------------------------1.00------------------------
.......................................................................................................................................TGCATGGGACAGGAGAGCTTGT.............................................................................................2211.001.00----------------------------------------------------------------1.00------------
..........................................................GAAGGATGCCAGTGC.................................................................................................................................................................................1570.140.14----------------------------------------------------------------------------0.14
........................................GAGCATGAATGAGGC...................................................................................................................................................................................................1580.120.12-------------------------0.12---------------------------------------------------

Antisense strand
AAGGTAAGCAGGTCTTTCAAGGCATTCCAAGCATAAGGAAGAGCATGAATGAGGCCTAGAAGGATGCCAGTGCCCGAGGTGACGTGGGAGCCCTTTTCCCAGAGTTACATGCTGGGCCCATGATGGGTGTGGGCCTGCATGGGACAGGAGAGCTTGTTGCAGAGATGTGATGCTAGGCTGAGGTGTCTTATCCCATGCAGTCTTTCCTGTCTGTCTTCCGCTCACTGGCGATGCTGGAGAAGACGGTGGA
......................................................................................................................................((((((((((.((((..((((...((..((........))..))..)))).)))).))))))))))..................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR189782SRR029128(GSM416757)
H520. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR037938(GSM510476)
293Red. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR189786GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR189787TAX577739(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR037936(GSM510474)
293cand1. (cell line)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR191492(GSM715602)
154genomic small RNA (size selected RNA from . (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR038858(GSM458541)
MEL202. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
...........................................................................................................CCCATCATGGGCCCAGCATG........................................................................................................................... 2011.001.00-------------------------1.00---------------------------------------------------
.................................TAAGGAAGAGCATGAA......................................................................................................................................................................................................... 161.000.00---------------------------------------------------------------------------1.00-
............................................................................................................................................GGGACAGGAGAGCTTTGTC........................................................................................... 191.000.00--1.00--------------------------------------------------------------------------