ID: uc001ojn.1_intron_16_0_chr11_66638669_r
GENE: PC(4)
chr11:66638619-66638835-


(2)
AGO2.ip 		(1)
BRAIN 		(8)
BREAST 		(12)
CELL-LINE 		(1)
FIBROBLAST 		(2)
HEART 		(8)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(10)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CCGCAAGATGGGAGACAAGGTGGAGGCCCGGGCCATCGCCATTGCTGCGGGTGAATATAACGGGCAAGCAAGGGGTGGCCCCGCAGCTCCTGGAGAGGGTCCAGCAGGGAGGGGTGGCAGGGATTCCCGCCTGTTACAGAGACTCCCCCACACCTTTCTCCCAACAGGTGTTCCCGTTGTCCCTGGCACAGATGCCCCCATCACGTCCCTGCATGAG
..........................................................................................................((((((((((...((((.((....(((...))).)).))))...)))))..))))).......................................................
....................................................................................................101...............................................................167................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189783SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191491(GSM715601)
150genomic small RNA (size selected RNA from . (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		TAX577744(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038862(GSM458545)
MM472. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................................................................................................CTCCCCCACACCTTTCTCCCAAC....................................................23113.0013.00-1.001.001.003.00----2.00--1.00-------1.00-----1.00--------1.00---1.00-------
.........................................................................................................AGGGAGGGGTGGCAGGGATTATC.........................................................................................2318.002.008.00----------------------------------------------
..............................................................................................................................................CTCCCCCACACCTTTCTCCCAACAG..................................................2518.008.00--6.00------------------1.00--------------1.00----------
........................................................................................................CAGGGAGGGGTGGCAGGGAT.............................................................................................2014.004.00-----2.002.00----------------------------------------
........................................................................................................................................................................................GGCACAGATGCCCCCATCACGT...........2213.003.00-3.00---------------------------------------------
..............................................................................................................................................CTCCCCCACACCTTTCTCCCAA.....................................................2213.003.00---------------1.00------1.00------1.00-----------------
..............................................................................................................................................CTCCCCCACACCTTTCTCCCAACA...................................................2412.002.00-1.00-------------------------1.00-------------------
.........................................................................................................AGGGAGGGGTGGCAGGGATT............................................................................................2012.002.00---1.00------------------------1.00------------------
..............................................................................................................................................CTCCCCCACACCTTTCTCCCA......................................................2112.002.00-------------------1.00--------------1.00------------
.............................................................................................................................................................................................AGATGCCCCCATCACGTCCCT.......2112.002.00-------2.00---------------------------------------
.........................................................................................................AGGGAGGGGTGGCAGGGATTCGT.........................................................................................2312.001.00---2.00-------------------------------------------
.........................................................................................................AGGGAGGGGTGGCAGGGATTAAA.........................................................................................2311.002.00------------------------1.00----------------------
..............................................................................................................................................CTCCCCCACACCTTTCTCCCAACAGT.................................................2611.008.00------------------------------1.00----------------
.CGCAAGATGGGAGACAAGG.....................................................................................................................................................................................................1911.001.00----------------------------------------1.00------
.........................................................................................................AGGGAGGGGTGGCAGGGATTC...........................................................................................2111.001.00-------------1.00---------------------------------
..............................................................................................................................................CTCCCCCACACCTTTCTCCCAGAGT..................................................2511.002.00------------1.00----------------------------------
.........................................................................................................AGGGAGGGGTGGCAGGGATTCAA.........................................................................................2311.001.00--------------------------------1.00--------------
..............................................................................................................................................................................CGTTGTCCCTGGCACAGATGCCCCCAT................2711.001.00-----------1.00-----------------------------------
.........................GCCCGGGCCATCGCC.................................................................................................................................................................................1511.001.00--------------1.00--------------------------------
.........................................................................................................AGGGAGGGGTGGCAGGGATTCA..........................................................................................2211.001.00-----------------------------------------1.00-----
.........................................................................................................AGGGAGGGGTGGCAGGGA..............................................................................................1831.001.00---0.33-0.33-------------------------------------0.33---
..GCAAGATGGGAGACAAGGTG...................................................................................................................................................................................................2011.001.00-1.00---------------------------------------------
........................................................................................................CAGGGAGGGGTGGCAGGGATTC...........................................................................................2211.001.00-----------------1.00-----------------------------
..............................................................................................................................................CTCCCCCACACCTTTCTCCCATA....................................................2311.002.00--------1.00--------------------------------------
.................................................GGTGAATATAACGGGCAAGCAAGGGGTGGC..........................................................................................................................................3011.001.00-----------------------1.00-----------------------
............AGACAAGGTGGAGGCCCGGGC........................................................................................................................................................................................2111.001.00-1.00---------------------------------------------
..............................................................................................................................................CTCCCCCACACCTTTCTCCCATT....................................................2311.002.00----------------1.00------------------------------
.........................................................................................................AGGGAGGGGTGGCAGGGATTT...........................................................................................2111.002.00---1.00-------------------------------------------
........................................................................................................CAGGGAGGGGTGGCAGGGATAA...........................................................................................2211.004.00------------------1.00----------------------------
..............................................................................................................................................CTCCCCCACACCTTTCTCCCAAT....................................................2311.003.00---------------------------------1.00-------------
............................................................................................................................................................TCTCCCAACAGGTGTTCCGGT........................................211.000.00-------------------------------1.00---------------
..........................................................................................................................................................................TTCCCGTTGTCCCTGGCACA...........................2011.001.00--------------------------------------1.00--------
..........GGAGACAAGGTGGAGCAC.............................................................................................................................................................................................181.000.00-------------------------------------1.00---------
..............................................................................................................................................CTCCCCCACACCTTTCTCCCAATA...................................................2411.003.00-1.00---------------------------------------------
...............................................................................................................................................TCCCCCACACCTTTCTCCCAAC....................................................2211.001.00-------------------------1.00---------------------
....................................................................................................................................................................................................CCCATCACGTCCCTGCATGA.2011.001.00-----------1.00-----------------------------------
...............................................................................................................................................................................GTTGTCCCTGGCACAGATGCCCCCATC...............2711.001.00--------1.00--------------------------------------
.........................................................................................................AGGGAGGGGTGGCAGGGAT.............................................................................................1920.500.50---0.50-------------------------------------------
.........................................................................................................AGGGAGGGGTGGCAGGGATA............................................................................................2020.500.50-------------0.50---------------------------------
........................................................................................................CAGGGAGGGGTGGCAGGGA..............................................................................................1920.500.50------------------------------------------0.50----
.......ATGGGAGACAAGGTGGA.................................................................................................................................................................................................1730.330.33--------------0.33--------------------------------
................................................................CAAGCAAGGGGTGGC..........................................................................................................................................1540.250.25--------------------------------------------0.25--
.....................................................................................................CAGCAGGGAGGGGTGGC...................................................................................................1740.250.25----------------------------------------------0.25
........................................................................................................CAGGGAGGGGTGGCAGG................................................................................................1760.170.17-----0.17-----------------------------------------
.........................................................................................................AGGGAGGGGTGGCAGGG...............................................................................................1770.140.14-----0.14-----------------------------------------

Antisense strand
CCGCAAGATGGGAGACAAGGTGGAGGCCCGGGCCATCGCCATTGCTGCGGGTGAATATAACGGGCAAGCAAGGGGTGGCCCCGCAGCTCCTGGAGAGGGTCCAGCAGGGAGGGGTGGCAGGGATTCCCGCCTGTTACAGAGACTCCCCCACACCTTTCTCCCAACAGGTGTTCCCGTTGTCCCTGGCACAGATGCCCCCATCACGTCCCTGCATGAG
..........................................................................................................((((((((((...((((.((....(((...))).)).))))...)))))..))))).......................................................
....................................................................................................101...............................................................167................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189783SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191491(GSM715601)
150genomic small RNA (size selected RNA from . (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		TAX577744(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038862(GSM458545)
MM472. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................................CCCCGCAGCTCCTGGTGTC........................................................................................................................ 192.000.00----------2.00------------------------------------
.................................................................................TCTCCAGGAGCTGCG......................................................................................................................... 1540.250.25---------------------------------------------0.25-