ID: uc001oix.1_intron_1_0_chr11_66407595_f.5p
GENE: (2)
chr11:66407545-66407794+


(1)
AGO2.ip 		(1)
B-CELL 		(2)
BRAIN 		(3)
BREAST 		(17)
CELL-LINE 		(1)
HEART 		(1)
HELA 		(1)
KIDNEY 		(3)
LIVER 		(2)
OTHER 		(17)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
AGAGGATGCAGTGGAGGCCATCAGGGGCCTTGATAACACAGAGTTTCAAGGTGAACCACCCTCTTTGGGTAGAGGGCTGAACACAAGGCTGTGTGCAGAAAATGGTTGGATAAGTAAAAGGAGAGGTTTGGTAAAGATAACAGCTGTTGGCTGGCTGGTGATGAAGAAATAAGTGTGGGTGATGGACTTCTTATGATGTAGAATGCATGGGACTTAGGGGCTTTACCTTAGGCAAATGTCTCCTGGAGAA
..............................................................................................................................(((.((..((....((((.....)))).))....)).)))....................................................................................
.....................................................................................................102...............................................................168................................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................................................................................................CTGTTGGCTGGCTGGTGATGA......................................................................................2113.003.00-----3.00-------------------------------------------
..........................................................................................................TGGATAAGTAAAAGGAGAGGTTTGG.......................................................................................................................2513.003.00-3.00-----------------------------------------------
.....................................................................................AGGCTGTGTGCAGAAAATGGTCGG.............................................................................................................................................242.000.002.00------------------------------------------------
....................................................................................................................................................................................................TGTAGAATGCATGGGACTTAGGGGC.............................2512.002.002.00------------------------------------------------
......................................................................................................................................................................................................................TAGGGGCTTTACCTTAGG..................1812.002.00---------2.00---------------------------------------
...................................................................................................................................................................AAGAAATAAGTGTGGGTGATGGACTTC............................................................2712.002.002.00------------------------------------------------
............................................................................................................................GGTTTGGTAAAGATAACAGCTGTTG.....................................................................................................2512.002.00-------2.00-----------------------------------------
........................................................................................CTGTGTGCAGAAAATGGTTGGATAAGTAA.....................................................................................................................................2912.002.00--------1.00---------------1.00------------------------
.................................................................................................................................................GTTGGCTGGCTGGTGATGAAGAAA.................................................................................2412.002.00--2.00----------------------------------------------
...........................................................................................TGTGCAGAAAATGGTTGGAT...........................................................................................................................................2011.001.00--------------------------------------1.00----------
...................................................................................CAAGGCTGTGTGCAGAAAATGGTT...............................................................................................................................................2411.001.00--1.00----------------------------------------------
...................................................................................................................................................................................................ATGTAGAATGCATGGGACTTAGG................................2311.001.00-----------1.00-------------------------------------
.................................................................................................................................................................................................TGATGTAGAATGCATGGGA......................................1911.001.00---1.00---------------------------------------------
..AGGATGCAGTGGAGGAAC......................................................................................................................................................................................................................................181.000.00---------------------1.00---------------------------
.......................................................................................................................................................................................................AGAATGCATGGGACTTAGGGGCCT...........................241.000.001.00------------------------------------------------
................................................................................................................................................................................................ATGATGTAGAATGCATGGGA......................................2011.001.00----1.00--------------------------------------------
.......................................................................................................................................................................................................AGAATGCATGGGACTTAGGGGCTCT..........................251.000.001.00------------------------------------------------
...........................................................................................................................................................................AGTGTGGGTGATGGACT..............................................................1711.001.001.00------------------------------------------------
...........................................................................................................................................................TGGTGATGAAGAAATAAGTGT..........................................................................2111.001.00--1.00----------------------------------------------
...........................................................................................TGTGCAGAAAATGGTTGGATA..........................................................................................................................................2111.001.00--------------------------------1.00----------------
......................................................................AGAGGGCTGAACACAAGGCTGTGT............................................................................................................................................................2411.001.00-----------------1.00-------------------------------
...............................................................................................................................................................................................TATGATGTAGAATGCATGGGACTTAGG................................2711.001.00-1.00-----------------------------------------------
......................................................................................................TGGTTGGATAAGTAAAAGGAGAGG............................................................................................................................2411.001.00-1.00-----------------------------------------------
..........................................................................................................................................................................AAGTGTGGGTGATGGACTTCTTATG.......................................................2511.001.00------------------------------------1.00------------
..............................................................................................................................................GCTGTTGGCTGGCTGGGATA........................................................................................201.000.00----1.00--------------------------------------------
......................................................................................................................................................................AAATAAGTGTGGGTGATGGACT..............................................................2211.001.00-------------------------------------------1.00-----
.................................................................................................GAAAATGGTTGGATAAGTAAAAGG.................................................................................................................................2411.001.00-------------------------------1.00-----------------
..................................................................................................................................................................GAAGAAATAAGTGTGGGTGATG..................................................................2211.001.00----1.00--------------------------------------------
....................................................................................AAGGCTGTGTGCAGAAAATGGTTGGATA..........................................................................................................................................2811.001.00--------------------1.00----------------------------
....................TCAGGGGCCTTGATAAC.....................................................................................................................................................................................................................1711.001.00---------------1.00---------------------------------
........................................................................................................................................................................ATAAGTGTGGGTGATGGACTTCTTATGATGTAGAATGCATGGGACTTAGGGGC.............................5311.001.00------------------------------------------1.00------
...............................................................................................................................................................................................TATGATGTAGAATGCATGGG.......................................2011.001.00--------------------------1.00----------------------
...........................................................................................................................................................................AGTGTGGGTGATGGACTTCTTACG.......................................................241.000.001.00------------------------------------------------
.......................................................................................................................................................................................................AGAATGCATGGGACTTAGGGGCTTCACC.......................281.000.001.00------------------------------------------------
.....................................................................................................ATGGTTGGATAAGTAAAAGGAGAGGTTTGG.......................................................................................................................3011.001.00---1.00---------------------------------------------
.................................................................TGGGTAGAGGGCTGAACACAAGGC.................................................................................................................................................................2411.001.001.00------------------------------------------------
..........................................................................................GTGTGCAGAAAATGGTTGGATA..........................................................................................................................................2211.001.00-----------------------------------1.00-------------
.................................................................................................GAAAATGGTTGGATATCT.......................................................................................................................................181.000.00--1.00----------------------------------------------
...............................................................................................................................................CTGTTGGCTGGCTGGTGATGAAGAAAT................................................................................2711.001.00----------1.00--------------------------------------
....................................................................................AAGGCTGTGTGCAGAAAATGGTT...............................................................................................................................................2311.001.00----------------1.00--------------------------------
...................................................................................CAAGGCTGTGTGCAGAAAATGGTTGGATAAGTAA.....................................................................................................................................3411.001.00------1.00------------------------------------------
.......................................................................................................................................................................................................AGAATGCATGGGACTTAGGGG..............................2111.001.00------------1.00------------------------------------
..............................................................................................................................................GCTGTTGGCTGGCTGGTGATGAAGAAATAAGTGT..........................................................................3411.001.00---1.00---------------------------------------------
...............................................................................................................................................................................................TATGATGTAGAATGCATGGGACTTAGGG...............................2811.001.00-1.00-----------------------------------------------
...................................................................................................................................................................................................ATGTAGAATGCATGGGACTTAGGGGCT............................2711.001.00----1.00--------------------------------------------
....................................................................GTAGAGGGCTGAACACAAGGCTG...............................................................................................................................................................2311.001.00-------------------1.00-----------------------------
.........................................................................................................TTGGATAAGTAAAAGGAGA..............................................................................................................................1911.001.00------------------1.00------------------------------
......................................................................................................................................................................AAATAAGTGTGGGTGATGGACTTCTT..........................................................2611.001.00----------------------------1.00--------------------
...............................................................................................................................................................................................................TGGGACTTAGGGGCTTTACCTAGGC..................251.000.001.00------------------------------------------------
...........................................................................................................................................................................................................TGCATGGGACTTAGGGGCTACC.........................221.000.001.00------------------------------------------------
................................................................................................AGAAAATGGTTGGATAAGTA......................................................................................................................................2011.001.00------1.00------------------------------------------
....................................................................................AAGGCTGTGTGCAGAAGATA..................................................................................................................................................201.000.00--1.00----------------------------------------------
...............................................................................................................................................................................................TATGATGTAGAATGCATGGGACTTAG.................................2611.001.00-1.00-----------------------------------------------
..............................................................................................................................................................................................TTATGATGTAGAATGCATGGGACTTAGGGGCAAA..........................341.000.00----------------------------------------1.00--------
..........................................................................................................................................................................................................ATGCATGGGACTTAGGGGC.............................1911.001.00----------------------------------1.00--------------
..............................................................................................................................................................................................TTATGATGTAGAATGCATGGG.......................................2111.001.00-----------------------------1.00-------------------
..........................................................................................................................................................................AAGTGTGGGTGATGGACTTCTTACG.......................................................251.000.001.00------------------------------------------------
...................................................................................................AAATGGTTGGATAAGTTTT....................................................................................................................................191.000.00-----------------------------------------1.00-------
........................................................................................................................................................................ATAAGTGTGGGTGATGGACT..............................................................2011.001.00--------1.00----------------------------------------
..................................................................................ACAAGGCTGTGTGCAGAAAATGGTT...............................................................................................................................................2511.001.00--------------1.00----------------------------------
...........................................................................................................................................................................AGTGTGGGTGATGGACTTCTCATG.......................................................241.000.001.00------------------------------------------------
..........................................................................................................................................................................AAGTGTGGGTGATGGACT..............................................................1811.001.001.00------------------------------------------------
..................................................................GGGTAGAGGGCTGAACACAAGG..................................................................................................................................................................2211.001.001.00------------------------------------------------
.......................................................................................................................................GATAACAGCTGTTGGCTGGCTGGTGATG.......................................................................................2811.001.00---1.00---------------------------------------------
..............................................................................................................................................GCTGTTGGCTGGCTGGTGATG.......................................................................................2111.001.00-------------------------1.00-----------------------
...................................................................................................................................................................................TGATGGACTTCTTATGATGTAGAATGC............................................2711.001.00-1.00-----------------------------------------------
........................................................................................CTGTGTGCAGAAAATGGTTGG.............................................................................................................................................2111.001.00---------------------------------1.00---------------
.......................................................................................................................................................................................................AGAATGCATGGGACTTAGGGGCC............................231.000.001.00------------------------------------------------
.................................................................................................................................................................................GGTGATGGACTTCTTATGATGTAGAATGCATGG........................................3311.001.00-----------------------1.00-------------------------
..............................................................................................................................................................................................TTATGATGTAGAATGCAAA.........................................191.000.00-------------1.00-----------------------------------
...............................................................TTTGGGTAGAGGGCTGAACACAAGGC.................................................................................................................................................................2611.001.00-1.00-----------------------------------------------
..........GTGGAGGCCATCAGGGGCCTTGA.........................................................................................................................................................................................................................2320.500.50------------------------------0.50------------------
.........AGTGGAGGCCATCAGGGGCC.............................................................................................................................................................................................................................2020.500.50---------------------------------------------0.50---
..............................................................................................................................................................................GTGGGTGATGGACTTC............................................................1620.500.50----------0.50--------------------------------------
.GAGGATGCAGTGGAGGCCATCAGGG................................................................................................................................................................................................................................2520.500.50-----------0.50-------------------------------------
................................................................................ACACAAGGCTGTGTGCAGA.......................................................................................................................................................1920.500.50-----------------------------------------------0.50-
.................................TAACACAGAGTTTCAAG........................................................................................................................................................................................................1720.500.50----------------------------------------------0.50--
............................................................................CTGAACACAAGGCTGT..............................................................................................................................................................1620.500.50--------------------------------------------0.50----
............................................................................CTGAACACAAGGCTG...............................................................................................................................................................1590.110.11------------------------------------------------0.11

Antisense strand
AGAGGATGCAGTGGAGGCCATCAGGGGCCTTGATAACACAGAGTTTCAAGGTGAACCACCCTCTTTGGGTAGAGGGCTGAACACAAGGCTGTGTGCAGAAAATGGTTGGATAAGTAAAAGGAGAGGTTTGGTAAAGATAACAGCTGTTGGCTGGCTGGTGATGAAGAAATAAGTGTGGGTGATGGACTTCTTATGATGTAGAATGCATGGGACTTAGGGGCTTTACCTTAGGCAAATGTCTCCTGGAGAA
..............................................................................................................................(((.((..((....((((.....)))).))....)).)))....................................................................................
.....................................................................................................102...............................................................168................................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................ACCACCCTCTTTGGGAAAC................................................................................................................................................................................. 193.000.00----------------------1.00----1.00---------1.00-----------
.......................................................................................................................................................................................................AAGCCCCTAAGTCCCATGCATTCT........................... 2411.001.00---------------------------------------1.00---------