ID: uc001odb.2_intron_4_0_chr11_64897852_r
GENE: (11)
chr11:64897802-64898181-


(1)
AGO1.ip OTHER.mut
(10)
B-CELL
(1)
BRAIN
(8)
CELL-LINE
(2)
CERVIX
(1)
FIBROBLAST
(4)
HEART
(3)
LIVER
(1)
OTHER
(14)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
GCCACCCCCTGCCCCCCACCCCCCACCACTCTTGCCTCAGCCCCCCAACTGTGAGTATCCCCTTGTCTGGCCACCCGGCATACCACTGGATACTTGCCCTGGGCTGGATGTGGAAGATGCTGGGAAATTGGAGAGTCCCTGCCCTCCAGAATCTCAGTCTGGGCCAGGGAGGGATTAAAAGATGAGAAATAGATGCTTGCAGTCAGTGTGACCAGTGCTGGGCTGAGGGCCTGTGGGAATAGGACAGAGCTCTCAATAGCCAGGCCCCCTGCCTGGGAGTTGGGTCTGTGTCCATTTGGCCCTTTCCTTACCTCCGTCTTCTCTCTGCAGTCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGG
.................................................................................................((((((((((...((.(((...(((....(((....(((((((.(((((((((.......)))))...)))))))))))....)))......)))...))).)).)))))....(((....)))..(((((((((((.........)))).)))))))....)))))....................................................................................................................
................................................................................................97.....................................................................................................................................................................264..................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR189782SRR037935(GSM510473)
293cand3. (cell line)
SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR189784SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR040036(GSM532921)
G243N. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189785SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR040017(GSM532902)
G645T. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
.....................................................................................................GGCTGGATGTGGAAGCGAG....................................................................................................................................................................................................................................................................1920.000.004.004.00-4.00--3.00--2.00-1.00-------1.00-----------------1.00----------
.....................................................................................................GGCTGGATGTGGAAGCGA.....................................................................................................................................................................................................................................................................186.000.003.003.00----------------------------------------------
.....................................................................................................GGCTGGATGTGGAAGC.......................................................................................................................................................................................................................................................................164.000.00--------------2.00------------------1.00----------1.00---
..............................................................................................................................................................................................................................................................AATAGCCAGGCCCCCTGCCTGGGAGTTGGGT...............................................................................................3113.003.00-----3.00------------------------------------------
.....................................................................................................GGCTGGATGTGGAAGGGCG....................................................................................................................................................................................................................................................................193.000.00--3.00---------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................CCTCCAGGCATGTTCCCAC.....1912.002.00----------2.00-------------------------------------
..........................................................................................................................................................................................................................................................................................................................................TCCCCCAGGGCCTCCTGCCTCC............................2211.001.00---------------------------------------1.00--------
...............................................................................................................................................................................................................................................TAGGACAGAGCTCTCAACATC........................................................................................................................211.000.00-------------------------------1.00----------------
.................................................................................................................................................................................................................................................................................................................................TCTCTGCAGTCCCCCTTTG........................................191.000.00--------1.00---------------------------------------
..............................................................................................................................................................................................................................................................................................................................................CCAGGGCCTCCTGCCTCCTTTTCCTC....................2611.001.00-------------1.00----------------------------------
....................................................................................................................................................................................................................................................................................................................TACCTCCGTCTTCTCTCTGCAGA.................................................2311.001.00--------------------------------1.00---------------
.....................................................................................................GGCTGGATGTGGAAGCA......................................................................................................................................................................................................................................................................171.000.00------------------1.00-----------------------------
.....................................................................................................GGCTGGATGTGGAAGTGGG....................................................................................................................................................................................................................................................................191.000.00--1.00---------------------------------------------
....................................................................................................................................................................................................................................................................................................................TACCTCCGTCTTCTCTCTGCAG..................................................2211.001.00----------------------------------------1.00-------
.................................................................................................................................................................................................................................................................................................................................TCTCTGCAGTCCCCCGCCC........................................191.000.00--------1.00---------------------------------------
.....................................................................................................GGCTGGATGTGGAAGAC......................................................................................................................................................................................................................................................................171.000.00------------1.00-----------------------------------
...........................................................................................................................................................................................................................................................................................................................................CCCCCAGGGCCTCCTGCC...............................1811.001.00------------1.00-----------------------------------
...............................................................................................GCCCTGGGCTGGATGTGGA..........................................................................................................................................................................................................................................................................1911.001.00----------------------------------1.00-------------
.....................................................................................................GGCTGGATGTGGAAGTGC.....................................................................................................................................................................................................................................................................181.000.00--------------------------------------1.00---------
......................................................................................................GCTGGATGTGGAAGAACGG...................................................................................................................................................................................................................................................................191.000.00------------------------------------1.00-----------
..............................................................................................................................................................................................................................................................................................................................................................CCTTTTCCTCCAGGCATGTTCCCACT....2611.001.00-------------1.00----------------------------------
.................................................................................................................................................................................................................................................................................................................................TCTCTGCAGTCCCCCGTTC........................................191.000.00----1.00-------------------------------------------
..........................................................................................................................................................................................................................................GGGAATAGGACAGAGCTCTCAATAGCCAGGCC..................................................................................................................3211.001.00---------------------------1.00--------------------
.....................................................................................................GGCTGGATGTGGAAGGGGG....................................................................................................................................................................................................................................................................191.000.00--1.00---------------------------------------------
...............................................................................................................................................................................................................................................................................................................TTCCTTACCTCCGTCTTCTCTCTGCAG..................................................2711.001.00--------------------1.00---------------------------
............................CTCTTGCCTCAGCCCCCCAACTGTGA......................................................................................................................................................................................................................................................................................................................................2611.001.00------------------------------------------1.00-----
.....................................................................................................GGCTGGATGTGGAAGTGT.....................................................................................................................................................................................................................................................................181.000.00--1.00---------------------------------------------
...............................................................................ATACCACTGGATACTTGCCCTGGGCTGGAT...............................................................................................................................................................................................................................................................................3011.001.00------------------------1.00-----------------------
.....................................................................................................GGCTGGATGTGGAAGTGCG....................................................................................................................................................................................................................................................................191.000.00-------------------------1.00----------------------
...............................................................................................GCCCTGGGCTGGATGTGGAAGATG.....................................................................................................................................................................................................................................................................2411.001.00-----------1.00------------------------------------
................................................................................................................................................................................................................TGACCAGTGCTGGGCTGAGGGCCTG...................................................................................................................................................2511.001.00-----------------------------------1.00------------
.....................................................................................................GGCTGGATGTGGAAGCGCG....................................................................................................................................................................................................................................................................191.000.00---1.00--------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................CATGTTCCCACTGTGG1690.110.11-----------------------------------------------0.11

Antisense strand
GCCACCCCCTGCCCCCCACCCCCCACCACTCTTGCCTCAGCCCCCCAACTGTGAGTATCCCCTTGTCTGGCCACCCGGCATACCACTGGATACTTGCCCTGGGCTGGATGTGGAAGATGCTGGGAAATTGGAGAGTCCCTGCCCTCCAGAATCTCAGTCTGGGCCAGGGAGGGATTAAAAGATGAGAAATAGATGCTTGCAGTCAGTGTGACCAGTGCTGGGCTGAGGGCCTGTGGGAATAGGACAGAGCTCTCAATAGCCAGGCCCCCTGCCTGGGAGTTGGGTCTGTGTCCATTTGGCCCTTTCCTTACCTCCGTCTTCTCTCTGCAGTCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGG
.................................................................................................((((((((((...((.(((...(((....(((....(((((((.(((((((((.......)))))...)))))))))))....)))......)))...))).)).)))))....(((....)))..(((((((((((.........)))).)))))))....)))))....................................................................................................................
................................................................................................97.....................................................................................................................................................................264..................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR189782SRR037935(GSM510473)
293cand3. (cell line)
SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR189784SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR040036(GSM532921)
G243N. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189785SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR040017(GSM532902)
G645T. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
...............................................................................................................................................................................................................................................................................................................................GCCCTGGGGGACTGCAGAGAGA....................................... 2213.003.00-------3.00----------------------------------------
..............................................................................................................................................................................................AGATGCTTGCAGTCAGGTTT.......................................................................................................................................................................... 201.000.00----1.00-------------------------------------------
................................................................................................................................................................................................................................................................................................................CTGCAGAGAGAAGACGGAGGTAAGGA.................................................. 2611.001.00-------------------------------------------1.00----
.........................................................................................................................................................................................CACTGACTGCAAGCATCTATTTC............................................................................................................................................................................ 2311.001.00---------------------1.00--------------------------
............................................................................................................................................................................................................................................................................................GGGCCAAATGGACACAGA.............................................................................. 1811.001.00-----------------------------------------1.00------
.................................................................................................................................................................GGCCAGGGAGGGATTACCA........................................................................................................................................................................................................ 191.000.00--------------------------1.00---------------------
...............................TTGCCTCAGCCCCCCACAC.......................................................................................................................................................................................................................................................................................................................................... 191.000.00----1.00-------------------------------------------
............................................................................................................................................................................................................................................................................................................................................CCCCAGGGCCTCCTGTCC.............................. 181.000.00-----------------------------1.00------------------
.............................................................................................................................................CCCTCCAGAATCTCAGGT............................................................................................................................................................................................................................. 181.000.00----1.00-------------------------------------------
...........................................................................................................................................................................................................................................................................................................................GGGACTGCAGAGAGAAGAC.............................................. 1911.001.00----------------1.00-------------------------------
..........................................................................GTATCCAGTGGTATGCCGG............................................................................................................................................................................................................................................................................................... 1911.001.00-----------------1.00------------------------------
.......................................................................................................................................................................GGAGGGATTAAAAGATGTT.................................................................................................................................................................................................. 191.000.00----------------------------1.00-------------------
.......................................................................................................................................................................................................................................................................................CCAAATGGACACAGACCCAA................................................................................. 2011.001.00---------------1.00--------------------------------
....................................................................................................................................................................................................................................................................................................................CTGGGGGACTGCAGAGAGAAGACGGAGGTA.......................................... 3011.001.00----------------------1.00-------------------------
..................CCCCCCACCACTCTTGGG........................................................................................................................................................................................................................................................................................................................................................ 181.000.00---------------------------------------------1.00--
...........................................................................................................................................................................................................................................................................................................CCCTTTCCTTACCTCGAGG.............................................................. 191.000.00-----------------------1.00------------------------
...........................................................................................................................................................................................................................GGGCTGAGGGCCTGTGGCC.............................................................................................................................................. 191.000.00------------------------------1.00-----------------
.....................................................................................................................................................................................................................................................................................................................................................AGGAAAAGGAGGCAGGAG..................... 1860.170.17----------------------------------------------0.17-