ID: uc001odb.2_intron_1_0_chr11_64896187_r.5p
GENE: (14)
chr11:64897001-64897250-


(2)
B-CELL 		(7)
BREAST 		(7)
CELL-LINE 		(1)
CERVIX 		(1)
HELA 		(2)
LIVER 		(1)
OTHER 		(22)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GCCGCCATGCTGCAGATCAACCAGTACCTCACCGTGCTGGCCTCCTTGGGGTGTGTCTGTACAGGGGAAGCAGAGTGGGTTTGGTGGGTCAGGAGTGGAGCTGCCAAGAGGTCCCCAGCAGTGGTTCTTGGCCTTTGACACCTGCCAATTCAGGCTGCCTATCTACAGGCCCACCAAGGGTCTCCAGGAGTTCTTGGTAACTCCTGGTGCCTTTATTTCCCACTCCAGAAAGCATGTCTGGATCTAAGTA
....................................................................................(((((.(((.((.(((..((((((((....(((....))))))))))).))).)).)))(((......))).)))))......(((((.....)))))....................................................................
....................................................................................85...............................................................................................182..................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR189787SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		TAX577740(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR189783SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR040029(GSM532914)
G026T. (cervix)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
.........................................................................................CAGGAGTGGAGCTGCGGC...............................................................................................................................................1823.000.00---3.00--1.00-3.00--2.001.001.00--1.00---1.00---1.00--1.00--1.001.00-1.00-1.00----1.00-1.00--1.001.00-
.................................................................................................................................................................TCTACAGGCCCACCATC........................................................................1712.000.00----2.001.00-3.00-3.00--------2.00---------------1.00-------------
...............................................................................................................................................................TATCTACAGGCCCACGATC........................................................................198.000.003.002.003.00---------------------------------------------
.........................................................................................CAGGAGTGGAGCTGCGGCT..............................................................................................................................................195.000.00------1.00---2.00------------------1.00---------1.00--------
...............................................................................................................................................................TATCTACAGGCCCACAATC........................................................................192.000.002.00-----------------------------------------------
...............................................................................................................................................................TATCTACAGGCCCACGAGC........................................................................192.000.00--1.00----------------------------------------1.00----
...............................................................................................................................................................TATCTACAGGCCCACGTTC........................................................................192.000.002.00-----------------------------------------------
.................................................................................................................................................................TCTACAGGCCCACCAGC........................................................................172.000.00-1.00---1.00------------------------------------------
.....................CAGTACCTCACCGTGCTGGCCTCCTTGGG........................................................................................................................................................................................................2912.002.00-------------------2.00----------------------------
...............................................................................................................................................................TATCTACAGGCCCACCCTC........................................................................192.000.00-2.00----------------------------------------------
.....................................................................................................TGCCAAGAGGTCCCCGGT...................................................................................................................................181.000.00-----1.00------------------------------------------
...............................................................................................................................................................TATCTACAGGCCCACGGCC........................................................................191.000.001.00-----------------------------------------------
...............................................................................................................................................................TATCTACAGGCCCACGATG........................................................................191.000.001.00-----------------------------------------------
...............................................................................................................................................................TATCTACAGGCCCACGCCA........................................................................191.000.001.00-----------------------------------------------
...............................................................................................................................................................TATCTACAGGCCCACGACT........................................................................191.000.001.00-----------------------------------------------
...............................................................................................................................................................TATCTACAGGCCCACGGTC........................................................................191.000.00--------------1.00---------------------------------
.................................GTGCTGGCCTCCTTGGG........................................................................................................................................................................................................1711.001.00----------------------------1.00-------------------
............................................................ACAGGGGAAGCAGAGTGGGTTTGGTGGGTC................................................................................................................................................................3011.001.00-----------------1.00------------------------------
...............................................................................................................................................................TATCTACAGGCCCACGTCC........................................................................191.000.001.00-----------------------------------------------
.....CATGCTGCAGATCAACCAGTACCTCACCGTG......................................................................................................................................................................................................................3111.001.00---1.00--------------------------------------------
..................................................................................................................................................................................................................................AGAAAGCATGTCTGGATCTA....2011.001.00-----------------------------------------1.00------
.................................................................................................................................................................TCTACAGGCCCACCACC........................................................................171.000.00----1.00-------------------------------------------
...............................................................................................................................................................TATCTACAGGCCCACAATT........................................................................191.000.00--1.00---------------------------------------------
..........................................................GTACAGGGGAAGCAGAGTGG............................................................................................................................................................................2011.001.00--------------------------------------1.00---------
...............................................................................................................................................................TATCTACAGGCCCACAATG........................................................................191.000.00-1.00----------------------------------------------
.................................................................................................................................................................TCTACAGGCCCACCAAC........................................................................171.000.00-----------------1.00------------------------------
............................................................................................GAGTGGAGCTGCCAAGAGG...........................................................................................................................................1911.001.00------1.00-----------------------------------------
.....CATGCTGCAGATCAACCA...................................................................................................................................................................................................................................1811.001.00--------------------------------1.00---------------
...............................................................................................................................................................TATCTACAGGCCCACCGTC........................................................................191.000.00--------------1.00---------------------------------
.......................................................................AGAGTGGGTTTGGTGGGTCC...............................................................................................................................................................201.000.00--------------------------1.00---------------------
........................................................CTGTACAGGGGAAGCAGA................................................................................................................................................................................1811.001.00------------1.00-----------------------------------
.........................................................................................CAGGAGTGGAGCTGCCAAG..............................................................................................................................................1911.001.00-------------------------1.00----------------------
...............................................................................................................................................................TATCTACAGGCCCACGCAC........................................................................191.000.00--1.00---------------------------------------------
...............................................................................................................................................................TATCTACAGGCCCACAGTC........................................................................191.000.00-1.00----------------------------------------------
...............................CCGTGCTGGCCTCCTTGGGGCC.....................................................................................................................................................................................................221.000.00----------------------1.00-------------------------
...............................................................................................TGGAGCTGCCAAGAGGTCCC.......................................................................................................................................2020.500.50-----------------------------------------------0.50

Antisense strand
GCCGCCATGCTGCAGATCAACCAGTACCTCACCGTGCTGGCCTCCTTGGGGTGTGTCTGTACAGGGGAAGCAGAGTGGGTTTGGTGGGTCAGGAGTGGAGCTGCCAAGAGGTCCCCAGCAGTGGTTCTTGGCCTTTGACACCTGCCAATTCAGGCTGCCTATCTACAGGCCCACCAAGGGTCTCCAGGAGTTCTTGGTAACTCCTGGTGCCTTTATTTCCCACTCCAGAAAGCATGTCTGGATCTAAGTA
....................................................................................(((((.(((.((.(((..((((((((....(((....))))))))))).))).)).)))(((......))).)))))......(((((.....)))))....................................................................
....................................................................................85...............................................................................................182..................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR189787SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		TAX577740(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR189783SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR040029(GSM532914)
G026T. (cervix)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
...................................................................................................................................................................TACAGGCCCACCAAGTCT..................................................................... 181.000.00---------------1.00--------------------------------
...GTTGATCTGCAGCATGGC..................................................................................................................................................................................................................................... 1811.001.00----------------1.00-------------------------------
..........................................................................................................................TGTCAAAGGCCAAGAACC.............................................................................................................. 1811.001.00--------------------------------------------1.00---
...............................................................................................................................................................TATCTACAGGCCCACCC.......................................................................... 171.000.001.00-----------------------------------------------
.............................................................................................................................................................................................................TTCTGGAGTGGGAAATAAAGGCACC.................... 2511.001.00-------------------------------------1.00----------
..................................................................................................................................................................CCTTGGTGGGCCTGTAG....................................................................... 1711.001.00-----------------------1.00------------------------
...............................CCGTGCTGGCCTCCTTGGGGTGTGTCG................................................................................................................................................................................................ 271.000.00------------------------------------1.00-----------
.................................................................................................................................................................................................................TGGAGTGGGAAATAAAGG....................... 1811.001.00---------------------1.00--------------------------
.........................................................................AGTGGGTTTGGTGGGTCAGGAGTGAGA...................................................................................................................................................... 271.000.00---------------1.00--------------------------------
.........................................................................................CTCTTGGCAGCTCCACTCCTG............................................................................................................................................ 2111.001.00-------------1.00----------------------------------