ID: uc001ocb.1_intron_5_0_chr11_64717341_r
GENE: C11orf85(4)
chr11:64717291-64717876-


(1)
AGO1.ip
(1)
AGO2.ip
(2)
B-CELL
(3)
BRAIN
(2)
BREAST
(20)
CELL-LINE
(2)
CERVIX
(1)
HEART
(2)
HELA
(2)
LIVER
(1)
OTHER
(6)
SKIN

Sense strand
CTTGGACAATCTTCAGCCCTTTGCTACAGAACACTTCATTGTATTTCCCTGTATCCTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCATGATCTTGGCTCACTGCAACCTCAGCCTCCCAGGTTCAAGCGATTCTCTTGCCTCAGCCTCTCCAGTAGCTGGGATTACAGGCACATGCCACCACACCCGGCTAATTTTGGTATTTTTAGTAGAGGCGCTATTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGCCATGAGCCACTGCGCCCAGCCTATCCTTTCTTTTCTGGCTGGAAATGAGCTACAGCTCACATTTTAGACTCAAATGGACGTAGCAAAACCATAGGCAGTTTGGAGGGTAGGTCAGGGGAAGGAGAGAGAGTCTCATCCCTAAAATAGTACTTAGGAATGCATACTGGCATCTTTCCTTACTCCTTAGCACCATTTTCCAGATAAAAGCAAATGGGAGAGAGTTTCCCACCTGAAATTCAAACATGGGGAA
.............................................................................(((((((.....)))))))....((((((..(((((.((((.........)).)).))).))..)))))).......................................................................................................................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150..................................................................................................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR189786DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR040040(GSM532925)
G612N. (cervix)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR189785SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343335GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR343337SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR038852(GSM458535)
QF1160MB. (cell line)
...................................................TATCCTTTTTTTTTTTTTTTTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................256.000.00--1.002.003.00-----------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTTTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................255.000.00--2.001.001.00-1.00---------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTTTTGGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................274.000.004.00---------------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTTTTCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................274.000.00--3.00---1.00---------------------------------------
..................................................................................................................................................................................................................................................................................................................................................TGAGCCACTGCGCCCAGCCTACGG................................................................................................................................................................................................................................244.000.00-4.00--------------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................244.000.003.00------1.00--------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTTTTCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................273.000.003.00---------------------------------------------
..........................................................................................................................TCTTGGCTCACTGCAACCTCAGCCTCCGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................303.000.003.00---------------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTTCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................242.000.00-1.00-1.00------------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTTTTCGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................272.000.002.00---------------------------------------------
...................................................TATCCTTTTTTTTTTTTTTTTAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................252.000.00---1.001.00-----------------------------------------
....................................................................................................................................................................................................ACAGGCACATGCCACCACACCGGCA.............................................................................................................................................................................................................................................................................................................................................................................252.000.001.001.00--------------------------------------------
...................................................TATCCTTTTTTTTTTTTTTTTTTTATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................272.000.00--2.00-------------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTAGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................242.000.002.00---------------------------------------------
...................................................TATCCTTTTTTTTTTTTTTTTTTTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................262.000.00--2.00-------------------------------------------
...................................................TATCCTTTTTTTTTTTTTTCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................232.000.00--1.00---1.00---------------------------------------
...................................................TATCCTTTTTTTTTTTTTTTTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................282.000.00--1.001.00------------------------------------------
................................................................................................................AATGGCATGATCTTGGCTCACTTTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................262.000.00-------------2.00--------------------------------
..........................................................................................................................TCTTGGCTCACTGCAACCTCAGCCCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................282.000.002.00---------------------------------------------
.................................................TGTATCCTTTTTTTTTCTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................202.000.002.00---------------------------------------------
...................................................TATCCTTTTTTTTTTTTTTTTTTTATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................272.000.00---2.00------------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTTTTCTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................272.000.002.00---------------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................252.000.00--1.00---1.00---------------------------------------
...................................................TATCCTTTTTTTTTTTTTTTGAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................242.000.001.001.00--------------------------------------------
.................................................................................................................................TCACTGCAACCTCAGCCTCCGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................241.000.001.00---------------------------------------------
.........................................................................................................................ATCTTGGCTCACTGCAACCTCAGCCCCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................291.000.001.00---------------------------------------------
....................................................................................................................................CTGCAACCTCAGCCTCCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................1801.001.00--------------1.00-------------------------------
..................................................................................................................................................TCCCAGGTTCAAGCGATTCTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................2201.001.00--------------------1.00-------------------------
........................................................................................................................................................................................GTAGCTGGGATTACAGGCACATGCCA........................................................................................................................................................................................................................................................................................................................................................................................2601.001.00--------1.00-------------------------------------
...................................................TATCCTTTTTTTTTTTTTTTTTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................261.000.00-------1.00--------------------------------------
...................................................TATCCTTTTTTTTTTTTTGTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................221.000.00-------1.00--------------------------------------
..........................................................................................................................TCTTGGCTCACTGCAACCTCAGCCCCCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................281.000.00-1.00--------------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTTCTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................251.000.00----1.00-----------------------------------------
....................................................................................................................................................................................................ACAGGCACATGCCACCACACAGC...............................................................................................................................................................................................................................................................................................................................................................................231.000.001.00---------------------------------------------
........................................................................................................................................................................................................................................................................................................ATCCACCCGCCTCGGCCTCATTT...........................................................................................................................................................................................................................................................................231.000.001.00---------------------------------------------
....................................................................................................................................................................................................ACAGGCACATGCCACCACACCGGGT.............................................................................................................................................................................................................................................................................................................................................................................251.000.00-1.00--------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................GGGATTACAGCCATGACAC..................................................................................................................................................................................................................................................191.000.00---------1.00------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTTTTCTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................271.000.00----1.00-----------------------------------------
...................................................TATCCTTTTTTTTTTTTTTTTTTTATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................281.000.00--1.00-------------------------------------------
.................................................................................................................................................................................CTCTCCAGTAGCTGGTTCC......................................................................................................................................................................................................................................................................................................................................................................................................191.000.00---------------------------1.00------------------
.....................................................TCCTTTTTTTTTTTTTTTTTTTGATTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................271.000.00--1.00-------------------------------------------
..............................................................................................................GCAATGGCATGATCTTGGCTCAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................261.000.00--------------1.00-------------------------------
....................................................................................................................................................................................................ACAGGCACATGCCACCACACCCGTCTG...........................................................................................................................................................................................................................................................................................................................................................................271.000.001.00---------------------------------------------
...................................................................................................................GGCATGATCTTGGCTCACTGCAACGTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................281.000.00------------------1.00---------------------------
......................................................................................................................................................................................CAGTAGCTGGGATTACATAAG...............................................................................................................................................................................................................................................................................................................................................................................................211.000.00---------------1.00------------------------------
..............................................................................................................................GGCTCACTGCAACCTCAGCCCACC....................................................................................................................................................................................................................................................................................................................................................................................................................................................241.000.001.00---------------------------------------------
........................................................................................................................................................................................GTAGCTGGGATTACAGGCACATGCCACG......................................................................................................................................................................................................................................................................................................................................................................................281.000.00--------1.00-------------------------------------
.....................................................TCCTTTTTTTTTTTTTTTTTTTGAGATGGGGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................331.000.001.00---------------------------------------------
..................................................GTATCCTTTTTTTTTTTTTTTTTTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................281.000.00----1.00-----------------------------------------
.................................................................................................................................................................................................ATTACAGGCACATGCCACCACACCGGCC.............................................................................................................................................................................................................................................................................................................................................................................281.000.001.00---------------------------------------------
...................................................................................................................................ACTGCAACCTCAGCCTCCCAGGGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................251.000.00------------------------------------------1.00---
.................................................TGTATCCTTTTTTTTTTTTTTTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................241.000.001.00---------------------------------------------
.............................................................................................................................................................AGCGATTCTCTTGCCTCAGCCCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................251.000.00-1.00--------------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTTTTGGGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................281.000.001.00---------------------------------------------
.............................................................................................................................................................................................................TGCCACCACACCCGGCTTTGC........................................................................................................................................................................................................................................................................................................................................................................211.000.001.00---------------------------------------------
......................................................................................................................................................................................................AGGCACATGCCACCACACCCGGCTATCC........................................................................................................................................................................................................................................................................................................................................................................281.000.001.00---------------------------------------------
...................................................TATCCTTTTTTTTTTTTTTTTCCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................251.000.00----1.00-----------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTTTTCCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................271.000.00----1.00-----------------------------------------
............................................................................................................................................................AAGCGATTCTCTTGCCTAGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................211.000.001.00---------------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTTTTCATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................271.000.00------1.00---------------------------------------
......................................................................................................................................................................................................AGGCACATGCCACCACACCCGGCCAAG.........................................................................................................................................................................................................................................................................................................................................................................271.000.001.00---------------------------------------------
.....................................................TCCTTTTTTTTTTTTTTTTTTTGAACAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................281.000.00--1.00-------------------------------------------
...................................................TATCCTTTTTTTTTTTTTTTTAGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................251.000.001.00---------------------------------------------
.................................................TGTATCCTTTTTTTTATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.001.00---------------------------------------------
...................................................................................................................GGCATGATCTTGGCTCACTGGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................231.000.00-------------------------------------1.00--------
................................................................................................ACCCAGGCTGGAGTGCAATGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................221.000.00----------------1.00-----------------------------
....................................................ATCCTTTTTTTTTTTTTTTTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................241.000.00------1.00---------------------------------------
...................................................TATCCTTTTTTTTTTTTTTTTTACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................251.000.00--1.00-------------------------------------------
.....................................................TCCTTTTTTTTTTTTTTTTTTTGAGCCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................281.000.001.00---------------------------------------------
...................................................TATCCTTTTTTTTTTTTTTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................231.000.00----1.00-----------------------------------------
....................................................................................................................................................................................................ACAGGCACATGCCACCACACCCGGCCG...........................................................................................................................................................................................................................................................................................................................................................................271.000.001.00---------------------------------------------
...................................................................................................................................................................................................................................................................................TTGAACTCCTGACCTCAGGG...................................................................................................................................................................................................................................................................................................201.000.00--------1.00-------------------------------------
...................................................TATCCTTTTTTTTTTTTTATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................211.000.00---1.00------------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTTTTCTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................261.000.00-------1.00--------------------------------------
...................................................TATCCTTTTTTTTTTTTTTTTTTTATTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................281.000.00---1.00------------------------------------------
.................................................TGTATCCTTTTTTTTTTTTTTTTGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................271.000.001.00---------------------------------------------
...................................................TATCCTTTTTTTTTTTTTTTTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................241.000.00----1.00-----------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTTTTGGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................271.000.00--1.00-------------------------------------------
......................................................................................................................................................................................................AGGCACATGCCACCACACGGAC..............................................................................................................................................................................................................................................................................................................................................................................221.000.00-1.00--------------------------------------------
..................................................................................................................................................................................................................................................................TGTTGGCCAGGCTGGTCTTGCTT.................................................................................................................................................................................................................................................................................................................231.000.00-1.00--------------------------------------------
..................................................GTATCCTTTTTTTTTTTTTTATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................231.000.00----1.00-----------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTTTTGAGCTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................301.000.001.00---------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................AGCCACTGCGCCCAGCCTATGGG...............................................................................................................................................................................................................................231.000.001.00---------------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTTCCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................251.000.00---1.00------------------------------------------
...........................................................................................................................................................................................................................................................................................................CACCCGCCTCGGCCTCCCAAAGACT......................................................................................................................................................................................................................................................................251.000.00---------1.00------------------------------------
.................................................................................................................................................................................................................................................................................................................................................ATGAGCCACTGCGCCCAGCCTACGG................................................................................................................................................................................................................................251.000.00-1.00--------------------------------------------
.........................................................................................................................ATCTTGGCTCACTGCAACCTCAGCTTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................281.000.001.00---------------------------------------------
...................................................................................................................................ACTGCAACCTCAGCCTCCCAGGCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................251.000.001.00---------------------------------------------
.................................................TGTATCCTTTTTTTTTTTTTTTTTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................261.000.00-1.00--------------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTTTTCCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................271.000.001.00---------------------------------------------
........................................................................................................................................................................................................................................................TATTTCACCATGTTGGCCACGC............................................................................................................................................................................................................................................................................................................................221.000.00-------------------1.00--------------------------
...................................................TATCCTTTTTTTTTTTTTTTTTTTATGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................281.000.00---1.00------------------------------------------
...................................................TATCCTTTTTTTTTTTTTTTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................261.000.00------1.00---------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTTCTAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................251.000.001.00---------------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTTTTGGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................271.000.001.00---------------------------------------------
.................................................TGTATCCTTTTTTTTTTTTTTTTTAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................271.000.00-1.00--------------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTTCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................241.000.00---1.00------------------------------------------
...................................................TATCCTTTTTTTTTTTTTTTTTTTAATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................281.000.00---1.00------------------------------------------
.............................................................................................................TGCAATGGCATGATCTTGGCTAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................241.000.00---------------------------------------1.00------
......................................................................................................................................................................................................................................................................................................TGATCCACCCGCCTCGGCCGCCA.............................................................................................................................................................................................................................................................................231.000.00-1.00--------------------------------------------
.................................................TGTATCCTTTTTTTTTTTTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................221.000.001.00---------------------------------------------
...................................................TATCCTTTTTTTTTTTTTTTTATTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................251.000.00-------1.00--------------------------------------
...................................................TATCCTTTTTTTTTTTTTTTGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................231.000.00--1.00-------------------------------------------
...................................................................................................................................................................................................................................................................GTTGGCCAGGCTGGTCTTGAACTCCTGCAC.........................................................................................................................................................................................................................................................................................................301.000.00--------------------------------1.00-------------
....................................................................................................................................................................................................ACAGGCACATGCCACCACACCCGGGTG...........................................................................................................................................................................................................................................................................................................................................................................271.000.00-1.00--------------------------------------------
.................................................................................................................................TCACTGCAACCTCAGCCTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00-1.00--------------------------------------------
...................................................TATCCTTTTTTTTTTTTTTTTTTTCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................271.000.00---1.00------------------------------------------
.....................................................TCCTTTTTTTTTTTTTTTTTTTGAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................291.000.00-1.00--------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................ACAGCCATGAGCCACTGCGCCCAGCCACG..................................................................................................................................................................................................................................291.000.001.00---------------------------------------------
.........................................................................................................................................ACCTCAGCCTCCCAGGTTCAAGCGATTCCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................311.000.001.00---------------------------------------------
.....................................................TCCTTTTTTTTTTTTTTTTTTTGAATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................271.000.00---1.00------------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTTTTCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................271.000.00--1.00-------------------------------------------
...............................................................................................................CAATGGCATGATCTTGGGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00-----------1.00----------------------------------
..................................................................................................................................................................................................TTACAGGCACATGCCACCACACCCGGCCC...........................................................................................................................................................................................................................................................................................................................................................................291.000.001.00---------------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................231.000.001.00---------------------------------------------
.............................................................................................................................TGGCTCACTGCAACCTCAGCCTCCGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................271.000.001.00---------------------------------------------
...................................................TATCCTTTTTTTTTTTTGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................211.000.00---1.00------------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTTTTCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................261.000.00----1.00-----------------------------------------
...................................................TATCCTTTTTTTTTTTTTTTTTCTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................251.000.00---1.00------------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTTTTGAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................291.000.001.00---------------------------------------------
............................................................................................................GTGCAATGGCATGATCTTGTAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................231.000.00--------------------------1.00-------------------
....................................................................................................................GCATGATCTTGGCTCACTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-----------------------------------1.00----------
....................................................ATCCTTTTTTTTTTTTTTTTTTTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................261.000.00--1.00-------------------------------------------
................................................................................................ACCCAGGCTGGAGTGCAATGGCATGACCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................301.000.00-1.00--------------------------------------------
...................................................TATCCTTTTTTTTTTTTTGGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................221.000.001.00---------------------------------------------
......................................................CCTTTTTTTTTTTTTTTTTTTGATAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................261.000.00----1.00-----------------------------------------
...................................................TATCCTTTTTTTTTTTTTTTTCTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................251.000.00------1.00---------------------------------------
.........................................................................................................................ATCTTGGCTCACTGCAACCTCAGCCCCCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................291.000.001.00---------------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTTTTCCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................271.000.001.00---------------------------------------------
...................................................TATCCTTTTTTTTTTGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00-------1.00--------------------------------------
....................................................................................................................................................................................................ACAGGCACATGCCACCACACCGGA..............................................................................................................................................................................................................................................................................................................................................................................241.000.001.00---------------------------------------------
.............................................................................................................................TGGCTCACTGCAACCTCAGCCTCCGGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................281.000.001.00---------------------------------------------
.............................................................................................................................TGGCTCACTGCAACCTCAGCCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................251.000.001.00---------------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTTCTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................251.000.001.00---------------------------------------------
................................................................................................................................CTCACTGCAACCTCAGCCTCCGGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................251.000.001.00---------------------------------------------
....................................................ATCCTTTTTTTTTTTTTTTTTTTGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................271.000.00-------------1.00--------------------------------
.............................................................................................................................................................AGCGATTCTCTTGCCTCAGCCTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................251.000.00-1.00--------------------------------------------
..........................................................................................................................................................................................................................................................................................................................CCCAAAGTGCTGGGATTACAGCCACACA....................................................................................................................................................................................................................................................281.000.00---------1.00------------------------------------

Antisense strand
CTTGGACAATCTTCAGCCCTTTGCTACAGAACACTTCATTGTATTTCCCTGTATCCTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCATGATCTTGGCTCACTGCAACCTCAGCCTCCCAGGTTCAAGCGATTCTCTTGCCTCAGCCTCTCCAGTAGCTGGGATTACAGGCACATGCCACCACACCCGGCTAATTTTGGTATTTTTAGTAGAGGCGCTATTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGCCATGAGCCACTGCGCCCAGCCTATCCTTTCTTTTCTGGCTGGAAATGAGCTACAGCTCACATTTTAGACTCAAATGGACGTAGCAAAACCATAGGCAGTTTGGAGGGTAGGTCAGGGGAAGGAGAGAGAGTCTCATCCCTAAAATAGTACTTAGGAATGCATACTGGCATCTTTCCTTACTCCTTAGCACCATTTTCCAGATAAAAGCAAATGGGAGAGAGTTTCCCACCTGAAATTCAAACATGGGGAA
.............................................................................(((((((.....)))))))....((((((..(((((.((((.........)).)).))).))..)))))).......................................................................................................................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150..................................................................................................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR189786DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR040040(GSM532925)
G612N. (cervix)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR189785SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343335GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR343337SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR038852(GSM458535)
QF1160MB. (cell line)
..............................................................................................................................................................GCGATTCTCTTGCCTCAGCCTATC.................................................................................................................................................................................................................................................................................................................................................................................................................... 2410.000.00-----10.00----------------------------------------
.....................................................................................................GGCTGGAGTGCAATGGCATGATAGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 262.000.002.00---------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCAGGGGAAGGAGGCAG.......................................................................................................................... 192.000.00----------------------------------1.00------1.00----
.................................................................................................................................................................................................................................................................................................................................................ATGAGCCACTGCGCCCAGCCTACCC................................................................................................................................................................................................................................ 252.000.00-2.00--------------------------------------------
......................................................................................................................................................AGGTTCAAGCGATTCTCTGGA............................................................................................................................................................................................................................................................................................................................................................................................................................... 212.000.00----------2.00-----------------------------------
................................................................................................ACCCAGGCTGGAGTGCAATGGCATGATCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 312.000.00-2.00--------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................ATGAGCCACTGCGCCCAGCCTATCC................................................................................................................................................................................................................................ 251.000.00-1.00--------------------------------------------
....................................................................................................................................CCTGGGAGGCTGAGGTTGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................. 2101.001.00-----------1.00----------------------------------
.......................................................................................................................................................................................................GGCACATGCCACCACACCCGGCTAAGT........................................................................................................................................................................................................................................................................................................................................................................ 271.000.001.00---------------------------------------------
...........................................................................................................................................................................................GCTGGGATTACAGGCACATGCCC........................................................................................................................................................................................................................................................................................................................................................................................ 231.000.00---------1.00------------------------------------
.............................................................................................................................................................AGCGATTCTCTTGCCTCAGCCTCTCGA.................................................................................................................................................................................................................................................................................................................................................................................................................. 271.000.001.00---------------------------------------------
........................................................................................................................................................................................................GCACATGCCACCACACCCGGCTGC.......................................................................................................................................................................................................................................................................................................................................................................... 241.000.00-1.00--------------------------------------------
...................................................................................................................GGCATGATCTTGGCTCACTGCAACGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................. 261.000.001.00---------------------------------------------
............................................................................................................................................................................................................................................................................................................ACCCGCCTCGGCCTCCCATTTC........................................................................................................................................................................................................................................................................ 221.000.001.00---------------------------------------------
.........................................................................................................................................ACCTCAGCCTCCCAGGTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................ 211.000.00-1.00--------------------------------------------
............................................................................................................................................................................................................................................................................................................ACCCGCCTCGGCCTCCCGGG.......................................................................................................................................................................................................................................................................... 201.000.00-----------------1.00----------------------------
.....................................................................................CTTGCTCTGTCACCCAGGCTGGAGTGCAACCCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 331.000.001.00---------------------------------------------
...............................................................................................................................GCTCACTGCAACCTCAGCCTCCCAGGTTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................ 311.000.00---------1.00------------------------------------
...................................................................................................................................................................................................TACAGGCACATGCCACCACACCCGGCTGC.......................................................................................................................................................................................................................................................................................................................................................................... 291.000.00-1.00--------------------------------------------
.......................................................................................................................................CAACCTCAGCCTCCCAGGTGATC............................................................................................................................................................................................................................................................................................................................................................................................................................................ 231.000.00-1.00--------------------------------------------
....................................................................................................................................CTTGAACCTGGGAGGCTGAGGTTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................... 2701.001.00--------1.00-------------------------------------
................................................................................................................................................................................................................................................................................................................................GTGCTGGGATTACAGCGAG....................................................................................................................................................................................................................................................... 191.000.00---------------------1.00------------------------
................................................................................................................................CTCACTGCAACCTCAGCCTCACTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................. 241.000.00--------------------------------------1.00-------
.....................TGAAGTGTTCTGTAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1711.001.00------------1.00---------------------------------
...............................................................................................................................................................CGATTCTCTTGCCTCAGCCTTTAA................................................................................................................................................................................................................................................................................................................................................................................................................... 241.000.00------------------------1.00---------------------
..........................................................................................................................................................................................................ACATGCCACCACACCCGTCGT........................................................................................................................................................................................................................................................................................................................................................................... 211.000.00-------------------------1.00--------------------
.................................................................................................................................................................................................................................................................................................................................TGGCTGTAATCCCAGCA........................................................................................................................................................................................................................................................ 1701.001.00----------1.00-----------------------------------
.............................................................................................GTCACCCAGGCTGGAGTGCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 221.000.00--------1.00-------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCCACCTGAAATTGA........... 181.000.00----------------------1.00-----------------------
...........................................................................................................................................................................................ATGTGCCTGTAATCCCAGC............................................................................................................................................................................................................................................................................................................................................................................................ 1901.001.00----------1.00-----------------------------------
.....................................................................................................GGCTGGAGTGCAATGGCATGATCTAGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 281.000.001.00---------------------------------------------
..........................................................................................................................................................................................................................................................................................................CCACCCGCCTCGGCCTCCCACCCC........................................................................................................................................................................................................................................................................ 241.000.00-1.00--------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................GCCACTGCGCCCAGCCTAACG................................................................................................................................................................................................................................ 211.000.00-1.00--------------------------------------------
...............................................................................................................................................................CGATTCTCTTGCCTCAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................... 201.000.00------------------------------1.00---------------
..............................................................................................................................................AGCCTCCCAGGTTCAAGCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................... 211.000.00-----------------------------1.00----------------
.............................................................................................................................................................AGCGATTCTCTTGCCTCAGCCTCTCG................................................................................................................................................................................................................................................................................................................................................................................................................... 261.000.001.00---------------------------------------------
...............................................................................................................................GCTCACTGCAACCTCAGCCTGAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................... 241.000.00-1.00--------------------------------------------
..............................................................................................................................................AGCCTCCCAGGTTCAAGCGATTAAT................................................................................................................................................................................................................................................................................................................................................................................................................................... 251.000.00------------1.00---------------------------------
..............................................................................................................................................................GCGATTCTCTTGCCTCAGCCTCTAA................................................................................................................................................................................................................................................................................................................................................................................................................... 251.000.00-----------------------1.00----------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAATGGGAGAGAGGC........................... 181.000.00---------------1.00------------------------------
..........................................................................................................................................................................CCTCAGCCTCTCCAGTAGCTGAA......................................................................................................................................................................................................................................................................................................................................................................................................... 231.000.00---------------------------------1.00------------
.......................................................................................................................................................................................................GGCACATGCCACCACACCCGGCTGT.......................................................................................................................................................................................................................................................................................................................................................................... 251.000.001.00---------------------------------------------
...............................................................................................................................GCTCACTGCAACCTCAGCCTCCCAGGTTCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................... 321.000.00-1.00--------------------------------------------
..........GTAGCAAAGGGCTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1711.001.00----------------------------1.00-----------------
.....................................................................................................................................TGCAACCTCAGCCTCCCAGGTCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................. 241.000.001.00---------------------------------------------
..............................................................................................................................GGCTCACTGCAACCTCAGCCTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................... 241.000.00-1.00--------------------------------------------
.....................................................................................................GGCTGGAGTGCAATGGCATGAAGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 251.000.001.00---------------------------------------------
....................................................................................................................................................................CTCTTGCCTCAGCCTCTCATA................................................................................................................................................................................................................................................................................................................................................................................................................. 211.000.00------------------------------------1.00---------
........................................................................................................................................................................................GCATGTGCCTGTAATCCCAGCTAC.......................................................................................................................................................................................................................................................................................................................................................................................... 2401.001.00----------1.00-----------------------------------
..................................................................................................................................................TCCCAGGTTCAAGCGATTCTCTTA................................................................................................................................................................................................................................................................................................................................................................................................................................ 241.000.00----------------------------------------1.00-----
..........................................................................................................................................................................................................................................................................................................CCACCCGCCTCGGCCTCCCAACCCC....................................................................................................................................................................................................................................................................... 251.000.001.00---------------------------------------------
............................................................................................................................................TCAGCCTCCCAGGTTCAAGCTTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................... 241.000.00------------1.00---------------------------------
..................................................................................................................................................................................................................................TTGGTATTTTTAGTAGTTAG.................................................................................................................................................................................................................................................................................................................................................... 201.000.00-------------------------------1.00--------------
..............................................................................................................................................................................................................GCCACCACACCCGGCTAATTTCA..................................................................................................................................................................................................................................................................................................................................................................... 231.000.00----------------1.00-----------------------------
.........................................................................................................................................................................................................................................................................................................TCCACCCGCCTCGGCCTCCCAGCAG........................................................................................................................................................................................................................................................................ 251.000.00-1.00--------------------------------------------
..........................................................................................................................................CCTCAGCCTCCCAGGTTCAAGCGATCC..................................................................................................................................................................................................................................................................................................................................................................................................................................... 271.000.00-1.00--------------------------------------------
...........................................................................................................................................CTCAGCCTCCCAGGTTCAAGCGATTCTACC................................................................................................................................................................................................................................................................................................................................................................................................................................. 301.000.00-1.00--------------------------------------------
....................................................................................................AGGCTGGAGTGCAATGGCATGATCTTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 281.000.00-----------1.00----------------------------------
...............................................................................................................................GCTCACTGCAACCTCAGCCTCCCAGGTTCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................... 331.000.001.00---------------------------------------------
.............................................................................................................................................CAGCCTCCCAGGTTCAAGCCC........................................................................................................................................................................................................................................................................................................................................................................................................................................ 211.000.00-----------------1.00----------------------------
.......................................................................................................................................................................................................................................................................................................................................................CACTGCGCCCAGCCTTAG................................................................................................................................................................................................................................. 181.000.00-1.00--------------------------------------------
.........................................................................TTGAGATGGAGTCTTGCCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 211.000.00------------------1.00---------------------------
.........................................................................................................................................................................................................................................................................................................TCCACCCGCCTCGGCCTCCCAAGGGC....................................................................................................................................................................................................................................................................... 261.000.001.00---------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCTCTCTCCTTCCCCTG....................................................................................................................... 1930.330.33-------------------------------------------0.33--
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAATTTCAGGTGG......... 1630.330.33--------------------------------------------0.33-
..........................................................................................................................................................................................................................................................................................................................................................AAAGGATAGGCTGGGCGCA............................................................................................................................................................................................................................. 1930.330.33---------------------------------------------0.33