ID: uc001oby.2_intron_8_0_chr11_64698962_f
GENE: (9)
chr11:64698912-64699080+


(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(1)
BRAIN 		(8)
BREAST 		(6)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(3)
HEART 		(1)
KIDNEY 		(1)
LIVER 		(3)
OTHER 		(23)
SKIN 		(1)
XRN.ip

Sense strand
CATACTGTGTGGTGCAGTTCCTGGAGAAGGATGCCACTCTGACAGAGCACGTGAGTACCTCTGGGGGCTAAGGCAGCCTCTCACCTCTGCAGGCGTGACTCCTGTCTCATCTCCCACAGGTGATCCGGGGGCTGCTCAAATACTGGCCAAAAACCTGCACCCAGAAGGA
..........................................................((.((((((...((((((....((((.((....)).))))...))))))...)))))).))..................................................
..................................................51..................................................................119................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189782SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189783SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191451(GSM715561)
177genomic small RNA (size selected RNA from . (breast)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR191469(GSM715579)
117genomic small RNA (size selected RNA from . (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR191569(GSM715679)
54genomic small RNA (size selected RNA from t. (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR037931(GSM510469)
293GFP. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040015(GSM532900)
G623T. (cervix)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................................................................................ACTCCTGTCTCATCTCCCACAGA.................................................23115.009.0012.00-1.00--------------1.00-----------1.00--------------------
.................................................................................................ACTCCTGTCTCATCTCCCACAG..................................................2219.009.00-2.00-------1.001.00-----------------1.00---1.00-1.00--1.00-1.00----------
.................................................................................................ACTCCTGTCTCATCTCCCACA...................................................2118.008.001.00--1.001.00-------------1.00--------1.00--1.00----1.00----1.00---------
.................................................................................................ACTCCTGTCTCATCTCCCACAGT.................................................2318.009.00-1.002.00--1.001.00-----1.00-------1.00----------1.00------------------
.......................................................TACCTCTGGGGGCTAAGGCAGA............................................................................................222.000.00-------2.00------------------------------------------
.................................................................................................ACTCCTGTCTCATCTCCCA.....................................................1912.002.00---------------------1.00--1.00-------------------------
.................................................................................................ACTCCTGTCTCATCTCCCACAAT.................................................2312.008.00-1.00------1.00-----------------------------------------
...........................AGGATGCCACTCTGACAGAGCACGTGATC.................................................................................................................291.000.00-----------------------1.00--------------------------
..............................ATGCCACTCTGACAGAG..........................................................................................................................1721.001.00---------------------------------1.00----------------
..................................................GTGAGTACCTCTGGGGGCTAAGGCA..............................................................................................2511.001.00--------------------------1.00-----------------------
............................GGATGCCACTCTGACAGAGCACGTGAT..................................................................................................................271.000.00---------1.00----------------------------------------
.....................................................................................................................................................AAAACCTGCACCCAGTGT..181.000.00-----1.00--------------------------------------------
.........................................................CCTCTGGGGGCTAAGGCAGCCTC.........................................................................................2311.001.00----------------------1.00---------------------------
..................................................GTGAGTACCTCTGGGGGCTAAGGC...............................................................................................2411.001.00-------------------------1.00------------------------
...........................................................TCTGGGGGCTAAGGCAGA............................................................................................181.000.00---1.00----------------------------------------------
.....................TGGAGAAGGATGCCACTCTGACAGAGCAC.......................................................................................................................2911.001.00--------------1.00-----------------------------------
...............................................CACGTGAGTACCTCTGGGGGCTAAGGCAGC............................................................................................3011.001.00-----------------------------------------1.00--------
.................................................................................................ACTCCTGTCTCATCTCCCACAGAA................................................2411.009.00----1.00---------------------------------------------
.................................................................................................ACTCCTGTCTCATCTCCCAAG...................................................2111.002.00------------------------------------------1.00-------
........GTGGTGCAGTTCCTGGAGA..............................................................................................................................................1911.001.00------1.00-------------------------------------------
.................................................................................................ACTCCTGTCTCATCTCCCACAT..................................................2211.008.00------------------------------------1.00-------------
..........................AAGGATGCCACTCTGACAGAGCACG......................................................................................................................2511.001.00--------1.00-----------------------------------------
........................................................................................................TCTCATCTCCCACAGGTGATC............................................2111.001.00-----------1.00--------------------------------------
...........................AGGATGCCACTCTGACAGAGCACGT.....................................................................................................................2511.001.00-------------------1.00------------------------------
................................GCCACTCTGACAGAGCACGTGCT..................................................................................................................231.000.00-------------1.00------------------------------------
...........................................................TCTGGGGGCTAAGGCAGCCTCTCA......................................................................................2411.001.00---------------1.00----------------------------------
.........................GAAGGATGCCACTCTGACAGAGC.........................................................................................................................2311.001.00--------------------------------------1.00-----------
...............................................................................................................................................TGGCCAAAAACCTGCACCCAGAAGG.2511.001.00----------------1.00---------------------------------
..........GGTGCAGTTCCTGGAGA..............................................................................................................................................1720.500.50--------------------------------------------0.50-----
..................................................GTGAGTACCTCTGGG........................................................................................................1550.200.20----------0.20---------------------------------------

Antisense strand
CATACTGTGTGGTGCAGTTCCTGGAGAAGGATGCCACTCTGACAGAGCACGTGAGTACCTCTGGGGGCTAAGGCAGCCTCTCACCTCTGCAGGCGTGACTCCTGTCTCATCTCCCACAGGTGATCCGGGGGCTGCTCAAATACTGGCCAAAAACCTGCACCCAGAAGGA
..........................................................((.((((((...((((((....((((.((....)).))))...))))))...)))))).))..................................................
..................................................51..................................................................119................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189782SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189783SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191451(GSM715561)
177genomic small RNA (size selected RNA from . (breast)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR191469(GSM715579)
117genomic small RNA (size selected RNA from . (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR191569(GSM715679)
54genomic small RNA (size selected RNA from t. (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR037931(GSM510469)
293GFP. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040015(GSM532900)
G623T. (cervix)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........TCCAGGAACTGCACCA................................................................................................................................................ 1670.860.86-------------------------------------------0.29-0.29--0.140.14
.........CTCCAGGAACTGCACCA............................................................................................................................................... 1760.830.83-------------------------------------------0.33-0.170.170.17--