ID: uc001obx.23
GENE: ATG2A(17)
chr11:64675087-64675269-


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(3)
AGO2.ip 		(1)
AGO3.ip 		(1)
B-CELL 		(1)
BRAIN 		(6)
BREAST 		(19)
CELL-LINE 		(1)
HEART 		(4)
HELA 		(1)
LIVER 		(1)
OTHER 		(9)
SKIN 		(1)
XRN.ip

Sense strand
GTCCACATCTTTCTGCCCAGCAAGGAGGTCTACGAGAGCATCTACAACAGGTGGAGACCCGGGGCCAGCAGGGCGGGACTGGACACTGGGTGGGCCTGGCCTCCCTTACCTGCTGTCCACCCGCCTATCTCAGGATCAACAACGACCTGCTCATGTGGGAGCCTGCAGATCTGCTTCCCACCC
......................................................................(((((((..((((((..(((((((........)))..))))..))))))))))))).........................................................
...............................................................64...................................................................133................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		TAX577588(Rovira)
total RNA. (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577743(Rovira)
total RNA. (breast)
....................................................................CAGGGCGGGACTGGACACTGG..............................................................................................21128.0028.00-5.0012.003.003.00-1.001.00-1.00------------1.00----------------1.00---
....................................................................CAGGGCGGGACTGGACACTGGGT............................................................................................23126.0026.0013.002.001.00-1.001.001.00--1.00---1.00-1.00----1.00--------1.00----1.00-1.00------
.....................................................................AGGGCGGGACTGGACACTGGGTGG..........................................................................................2419.009.003.00--1.00-2.00--1.001.00----------------------------1.00----
....................................................................CAGGGCGGGACTGGACACT................................................................................................1918.008.00-4.003.00------------1.00---------------------------
.....................................................................AGGGCGGGACTGGACACTGGGT............................................................................................2218.008.001.002.00---3.001.00-------------------1.00----------------
.....................................................................AGGGCGGGACTGGACACTGG..............................................................................................2015.005.00-------1.00--------1.001.001.001.00-----------------------
....................................................................CAGGGCGGGACTGGACACTGGA.............................................................................................2215.0028.00-2.00---1.00-----------1.00-----1.00-------------------
.....................................................................AGGGCGGGACTGGACACTGGGTGT..........................................................................................244.000.00----2.00---------------------------1.00--1.00-------
....................................................................CAGGGCGGGACTGGACACTGGG.............................................................................................2214.004.00---3.00------------1.00--------------------------
.....................................................................AGGGCGGGACTGGACACTGGGTA...........................................................................................2313.008.003.00------------------------------------------
....................................................................CAGGGCGGGACTGGACACTGGAA............................................................................................2313.0028.003.00------------------------------------------
....................................................................CAGGGCGGGACTGGACACTGGGTGGA.........................................................................................263.000.00----3.00--------------------------------------
....................................................................CAGGGCGGGACTGGACACTGT..............................................................................................2113.001.00-1.00------1.00---------------------1.00------------
..................................................GTGGAGACCCGGGGCCAGCAGGGCGGGACTGGACACTGGGTGGGCCTGGCCTCCCTTACCTGCTGTCCACCCGCCTATCTCAG..................................................8313.003.00-----------3.00-------------------------------
....................................................................CAGGGCGGGACTGGACACTGGGTTT..........................................................................................2513.0026.001.00--2.00---------------------------------------
....................................................................CAGGGCGGGACTGGACACTGGATC...........................................................................................2413.0028.00----------3.00--------------------------------
....................................................................CAGGGCGGGACTGGACACTGGGTGTA.........................................................................................262.000.00----2.00--------------------------------------
.....................................................................AGGGCGGGACTGGACACTGGG.............................................................................................2112.002.00--2.00----------------------------------------
.....................................................................AGGGCGGGACTGGACACTGT..............................................................................................202.000.00-2.00-----------------------------------------
...................................................................GCAGGGCGGGACTGGACACTGT..............................................................................................222.000.00---2.00---------------------------------------
....................................................................CAGGGCGGGACTGGACACTGGGA............................................................................................2312.004.00--1.00-------------------------1.00--------------
...................................................................GCAGGGCGGGACTGGACACTGGG.............................................................................................2312.002.002.00------------------------------------------
....................................................................CAGGGCGGGACTGGACACTGGT.............................................................................................2212.0028.00-2.00-----------------------------------------
.............................................................................................................CTGCTGTCCACCCGCCTATCT.....................................................2112.002.00------------1.00-----------1.00------------------
.....................................................................AGGGCGGGACTGGACACTGGGTGGA.........................................................................................2512.009.001.00--------------------------------1.00---------
.......................................................................................................................................................CATGTGGGAGCCTGCAGAT.............1911.001.00-------------------------------------1.00-----
......................AGGAGGTCTACGAGAGCATCTACA.........................................................................................................................................2411.001.00----------------------------------------1.00--
.....................................................................AGGGCGGGACTGGACACTGGGG............................................................................................2211.002.00--1.00----------------------------------------
.....................................................................AGGGCGGGACTGGACACTGGGTAGA.........................................................................................2511.008.00-----1.00-------------------------------------
.....................................................................AGGGCGGGACTGGACACTAGGT............................................................................................221.000.00-----1.00-------------------------------------
....................................................................CAGGGCGGGACTGGACACTGTTT............................................................................................2311.001.00---1.00---------------------------------------
.....................................................................AGGGCGGGACTGGACACTGGGTGTTT........................................................................................261.000.00-------------1.00-----------------------------
...........................................................................................................ACCTGCTGTCCACCCGCCTATC......................................................2211.001.001.00------------------------------------------
....................................................................CAGGGCGGGACTGGACACTGGGAA...........................................................................................2411.004.001.00------------------------------------------
....................................................................CAGGGCGGGACTGGACACTGGGGCA..........................................................................................2511.004.00-----------------------------------------1.00-
.....................................................................AGGGCGGGACTGGACACTGGGTGA..........................................................................................241.000.00---------------------------1.00---------------
....................................................................CAGGGCGGGACTGGACACTGAAA............................................................................................2311.001.00--------1.00----------------------------------
....................................................................CAGGGCGGGACTGGACACTGTAA............................................................................................2311.001.00-------1.00-----------------------------------
.....................................................................AGGGCGGGACTGGACACTGGGTTG..........................................................................................2411.008.001.00------------------------------------------
....................................................................CAGGGCGGGACTGGACACTGGATGT..........................................................................................2511.0028.00--------1.00----------------------------------
...................................................................GCAGGGCGGGACTGGACACTGGT.............................................................................................231.000.00-------------------------1.00-----------------
.............................................................................ACTGGACACTGGGTGCTTG.......................................................................................191.000.00-------------------------------1.00-----------
.............................................................................................................CTGCTGTCCACCCGCCTATCTCTT..................................................241.000.00---------------------1.00---------------------
....................................................................CAGGGCGGGACTGGACACTG...............................................................................................2011.001.00-------1.00-----------------------------------
...........................................................................................................ACCTGCTGTCCACCCGCCTATCT.....................................................2311.001.00------------------------------------------1.00
..................................................................AGCAGGGCGGGACTGGACACTGA..............................................................................................231.000.00------1.00------------------------------------
...........................................................................................................................................CAACGACCTGCTCATGTGGGAGCCTGCAGA..............3011.001.00------1.00------------------------------------
....................................................................CAGGGCGGGACTGGACACTGGGTGGTTT.......................................................................................281.000.00-----1.00-------------------------------------
.....................................................................AGGGCGGGACTGGACACCGGA.............................................................................................2121.000.50-------1.00-----------------------------------
..............................................................................................................................................................GAGCCTGCAGATCTGCTTCCCA...2211.001.00--------------1.00----------------------------
.....................................................................AGGGCGGGACTGGACAC.................................................................................................1720.500.50---------0.50---------------------------------

Antisense strand
GTCCACATCTTTCTGCCCAGCAAGGAGGTCTACGAGAGCATCTACAACAGGTGGAGACCCGGGGCCAGCAGGGCGGGACTGGACACTGGGTGGGCCTGGCCTCCCTTACCTGCTGTCCACCCGCCTATCTCAGGATCAACAACGACCTGCTCATGTGGGAGCCTGCAGATCTGCTTCCCACCC
......................................................................(((((((..((((((..(((((((........)))..))))..))))))))))))).........................................................
...............................................................64...................................................................133................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		TAX577588(Rovira)
total RNA. (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577743(Rovira)
total RNA. (breast)
......................................................................................................................................................................AGATCTGCTTCCCACCAA 181.000.00--------------1.00----------------------------
.........................................................CCCGGGGCCAGCAGGGCGTC.......................................................................................................... 201.000.00------------1.00------------------------------