ID: uc001obh.2_intron_23_0_chr11_64568504_r
GENE: (8)
chr11:64568454-64568632-


(2)
AGO2.ip 		(1)
AGO3.ip 		(3)
B-CELL 		(5)
BRAIN 		(6)
BREAST 		(16)
CELL-LINE 		(2)
CERVIX 		(2)
FIBROBLAST 		(6)
HEART 		(2)
HELA 		(2)
OTHER 		(21)
SKIN 		(1)
XRN.ip

Sense strand
CTGACAGCGTCTGTGGCCAAGAGGAGGTCTTTCATTGGGACTCCCTACTGGTGAGGCTGCGCCTGGGGCGGAGGGGTAGGGGCCACAGAGCAGGGCACCCGGCCATCCCATCTGTGACCCCACCTCTAGGATGGCTCCCGAGGTGGCTGCTGTGGAGCGCAAAGGTGGCTACAATGAGC
.......................................................................((((((.((((.((((((....(((.....)))......)))))).))))))))))....................................................
.................................................................66.............................................................129................................................
SizePerfect hitTotal NormPerfect NormSRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189782SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR040018(GSM532903)
G701N. (cervix)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		TAX577588(Rovira)
total RNA. (breast)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		TAX577739(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		GSM339994(GSM339994)
hues6. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
............................................................................................................CATCTGTGACCCCACCTCTAG..................................................21116.0016.00--4.00--1.00-1.00--1.00-----1.001.00-----1.00------1.00------------1.00---------------1.001.00-1.001.00----
......................................................................GAGGGGTAGGGGCCACAGAGCAG......................................................................................23113.0013.00-3.00-------1.00-1.00--------------1.001.00-1.00-1.00----1.00----------1.00----------------1.001.00--
............................................................................................................CATCTGTGACCCCACCTCTAGT.................................................22111.0016.00--1.001.00--------1.002.00--------------1.00------1.00-----1.00----------1.00--1.00-----1.00------
......................................................................GAGGGGTAGGGGCCACAGAG.........................................................................................2019.009.007.00----------1.00-----------------------------------------1.00--------------
...........................................................................................................CCATCTGTGACCCCACCTCTAG..................................................2216.006.00----1.00-2.00------------------1.00--------------------1.00--1.00------------------
............................................................................................................CATCTGTGACCCCACCTCTAGA.................................................2213.0016.00----1.001.00------------------------------------------------1.00-------------
............................................................................................................CATCTGTGACCCCACCTCTAGTT................................................2313.0016.00-3.00------------------------------------------------------------------
...........................................................................................................CCATCTGTGACCCCACCTCTAA..................................................2212.001.00--1.00-1.00---------------------------------------------------------------
......................................................................GAGGGGTAGGGGCCACAGAGCA.......................................................................................2212.002.00--------------2.00-----------------------------------------------------
...........................................................................................................CCATCTGTGACCCCACCTCT....................................................2012.002.00---------------------1.00--1.00-------------------------------------------
............................................................................................................CATCTGTGACCCCACCTCTAGTA................................................2312.0016.00----------------------------------1.00----------1.00----------------------
.................................................................................................................................................GCTGCTGTGGAGCGCAAAGGTGGCT.........2511.001.00----------------------1.00---------------------------------------------
...........................................................................................................CCATCTGTGACCCCACCTCTCG..................................................2211.002.00------1.00-------------------------------------------------------------
...................................................................................................................................................TGCTGTGGAGCGCAAAGGTGGCT.........2311.001.00---------------------------------------------------------1.00----------
............................................................................................................CATCTGTGACCCCACCTCTAGAAA...............................................2411.0016.00--------------------------------1.00-----------------------------------
...........................................................................................................................................GAGGTGGCTGCTGTGGAGCGC...................2111.001.00---1.00----------------------------------------------------------------
........................................................CTGCGCCTGGGGCGGCGGG........................................................................................................191.000.00---------------1.00----------------------------------------------------
.............................................TACTGGTGAGGCTGCCCC....................................................................................................................181.000.00------------------------------------------------1.00-------------------
.....................................................................GGAGGGGTAGGGGCCACAGAGCAT......................................................................................241.000.00--------1.00-----------------------------------------------------------
......................................................................GAGGGGTAGGGGCCACAGAGCAGT.....................................................................................2411.0013.00-------------------------------------1.00------------------------------
...........................................................................................................CCATCTGTGACCCCACCTCTAGA.................................................2311.006.00--------------------------------------------------1.00-----------------
..........................................................................................................................................CGAGGTGGCTGCTGTGGA.......................1811.001.00---------------------------------1.00----------------------------------
...............................................................TGGGGCGGAGGGGTAGGGGTA...............................................................................................211.000.00----------------------------------------1.00---------------------------
....................................................................CGGAGGGGTAGGGGCCACAGCGCT.......................................................................................241.000.00-------1.00------------------------------------------------------------
.TGACAGCGTCTGTGGCCAAGAGGAG.........................................................................................................................................................2511.001.00--------------------------------------------------------1.00-----------
............................................................................................................CATCTGTGACCCCACCTCTATT.................................................2211.001.00------------------------------------------1.00-------------------------
..GACAGCGTCTGTGGCCAAGAGGAG.........................................................................................................................................................2411.001.00---1.00----------------------------------------------------------------
..................................................................................................................................................CTGCTGTGGAGCGCAAAGG..............1911.001.00---------------------------------------------------1.00----------------
...........................................................................................................CCATCTGTGACCCCACCTCTAT..................................................2211.001.00--------------------------------------1.00-----------------------------
..GACAGCGTCTGTGGCCAAGAGGAGGT.......................................................................................................................................................2611.001.00---1.00----------------------------------------------------------------
....................................................................CGGAGGGGTAGGGGCCACAGAGCAT......................................................................................251.000.00----------------------------------------------------------1.00---------
............................................................................................................CATCTGTGACCCCACCTCTAT..................................................2111.001.00----------1.00---------------------------------------------------------
...........................................................................................................CCATCTGTGACCCCACCTCTA...................................................2111.001.00----1.00---------------------------------------------------------------
............................................................................................................CATCTGTGACCCCACCTCTA...................................................2011.001.00-------------------1.00------------------------------------------------
............................................................................................................CATCTGTGACCCCACCTCCAG..................................................211.000.00--------------------1.00-----------------------------------------------
......................................................................GAGGGGTAGGGGCCACAGAGCAGA.....................................................................................2411.0013.00-----1.00--------------------------------------------------------------
................................................................................................ACCCGGCCATCCCATAG..................................................................171.000.00------------------1.00-------------------------------------------------
............................................................................................................CATCTGTGACCCCACCTCTAGTAA...............................................2411.0016.00--------1.00-----------------------------------------------------------
..............................TTCATTGGGACTCCCTACTGG................................................................................................................................2121.001.00----------------0.50--------------------------------------------------0.50
...........................................................................GTAGGGGCCACAGAGCAGAA....................................................................................201.000.00------------1.00-------------------------------------------------------
..............................TTCATTGGGACTCCCTACTG.................................................................................................................................2020.500.50------------------------------------------------------------------0.50-
............................................................................................................................................AGGTGGCTGCTGTGGA.......................1670.140.14---0.14----------------------------------------------------------------

Antisense strand
CTGACAGCGTCTGTGGCCAAGAGGAGGTCTTTCATTGGGACTCCCTACTGGTGAGGCTGCGCCTGGGGCGGAGGGGTAGGGGCCACAGAGCAGGGCACCCGGCCATCCCATCTGTGACCCCACCTCTAGGATGGCTCCCGAGGTGGCTGCTGTGGAGCGCAAAGGTGGCTACAATGAGC
.......................................................................((((((.((((.((((((....(((.....)))......)))))).))))))))))....................................................
.................................................................66.............................................................129................................................
SizePerfect hitTotal NormPerfect NormSRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189782SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR040018(GSM532903)
G701N. (cervix)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		TAX577588(Rovira)
total RNA. (breast)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		TAX577739(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		GSM339994(GSM339994)
hues6. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................GCTGCGCCTGGGGCGGTC.......................................................................................................... 181.000.00---------1.00----------------------------------------------------------
..............................................................................................GCACCCGGCCATCCCAGT................................................................... 181.000.00---------------1.00----------------------------------------------------
................................................................................................ACCCGGCCATCCCATCTG................................................................. 181.000.00--------------------------------------------1.00-----------------------
............................................................................................................................................AGGTGGCTGCTGTGGATCCG................... 2071.000.00---------------------------------------1.00----------------------------
..........................................................................................................GGGGTCACAGATGGG.......................................................... 1590.110.11---0.11----------------------------------------------------------------