ID: uc001oad.2_intron_9_0_chr11_64135733_f
GENE: (10)
chr11:64135683-64136007+


(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(11)
B-CELL 		(3)
BRAIN 		(9)
BREAST 		(20)
CELL-LINE 		(3)
CERVIX 		(2)
HEART 		(2)
LIVER 		(2)
OTHER 		(1)
OVARY 		(10)
SKIN

Sense strand
CTGGAGACCGGCCAGGTCGGGCAGCGGTGGCCAGGAGCGCTATGATGCAGGTGGGCTGGGCTGGGCTGGGTTGGGGGGAAATTGGTTTTAGGAGAGGCCTAGGCCCGGGGACTCTAGGCCTAGATCCAACTGGCGCCCGCAGCGTGAGCTCAGCAAGGTCCTAAGCCTCTCCGACATGGGGCGTGGCGGGGCCGCGGGGCTACCAGGTGGGACCTCTGACGCGCCGCCTTCGCCTTCGCCTTCGCCTTCGCCTCCAGGACTCGCCCTTCTTCCAGCAGTACGAGCTGGACCTGCGGGAGCCTGCGCTGGGCCAGGGCAGCTTTTC
....................................................(((((..((((((((..((((.(((....((((((...(((.((((((((.((...))...))))))))...)))))))))..))).))))...))))))))..)))))...(((((.((.((.......)))).))))).....................................................................................................................................
..................................................51............................................................................................................................................193..................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		TAX577745(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		TAX577580(Rovira)
total RNA. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR040007(GSM532892)
G601T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM379265(GSM379265)
Small RNA from endometrioid ovarian cancer tissue. (ovary)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038856(GSM458539)
D11. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR191455(GSM715565)
181genomic small RNA (size selected RNA from . (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR040041(GSM532926)
G612T. (cervix)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
.......................................................CTGGGCTGGGCTGGGTTGGGCA........................................................................................................................................................................................................................................................227.000.004.00----1.00-------------------------1.00---1.00-----------------------------
.......................................................CTGGGCTGGGCTGGGTTGGGCAA.......................................................................................................................................................................................................................................................236.000.003.00--2.00--------------------------------1.00----------------------------
..................................................GTGGGCTGGGCTGGGCTGGGTTTTT..........................................................................................................................................................................................................................................................254.000.00--------2.00--2.00-----------------------------------------------------
............................................................CTGGGCTGGGTTGGGCAA.......................................................................................................................................................................................................................................................183.000.003.00----------------------------------------------------------------
..................................................GTGGGCTGGGCTGGGC...................................................................................................................................................................................................................................................................1603.003.00--2.00----------------------1.00---------------------------------------
.......................................................CTGGGCTGGGCTGGGTAGG...........................................................................................................................................................................................................................................................192.000.00-----------------1.00-----------------------1.00-----------------------
.......................................................CTGGGCTGGGCTGGGTTGGGGGA.......................................................................................................................................................................................................................................................232.000.00--------------2.00--------------------------------------------------
..................................................GTGGGCTGGGCTGGGCTGGTCC.............................................................................................................................................................................................................................................................222.000.00--1.00---------1.00----------------------------------------------------
........CGGCCAGGTCGGGCAGCGGTGGCCAGGAGCG..............................................................................................................................................................................................................................................................................................3112.002.00-------------2.00---------------------------------------------------
.......................................................CTGGGCTGGGCTGGGTTGGGCAG.......................................................................................................................................................................................................................................................232.000.00---1.00----------------1.00--------------------------------------------
................................AGGAGCGCTATGATGCAG...................................................................................................................................................................................................................................................................................1812.002.00----------------1.00------------------------------------1.00-----------
..................................................GTGGGCTGGGCTGGGCTGGGA..............................................................................................................................................................................................................................................................212.000.00-------2.00---------------------------------------------------------
.........................................................................................................................................................................................................................................................................................GAGCTGGACCTGCGGGAGCC........................2011.001.00--------------------------------------1.00--------------------------
................TCGGGCAGCGGTGGCCAGGAGC...............................................................................................................................................................................................................................................................................................2211.001.00-----------------------------1.00-----------------------------------
...............GTCGGGCAGCGGTGGCCAGGA.................................................................................................................................................................................................................................................................................................2111.001.00----------1.00------------------------------------------------------
.TGGAGACCGGCCAGGTCGGGCAGC............................................................................................................................................................................................................................................................................................................2411.001.00-1.00---------------------------------------------------------------
..................................................GTGGGCTGGGCTGGGCTGTGG..............................................................................................................................................................................................................................................................211.000.00-1.00---------------------------------------------------------------
.......................................................CTGGGCTGGGCTGGGTTGAGCC........................................................................................................................................................................................................................................................221.000.00--------------------------------1.00--------------------------------
..................................................GTGGGCTGGGCTGGGCTAGGC..............................................................................................................................................................................................................................................................211.000.00-1.00---------------------------------------------------------------
..................................................GTGGGCTGGGCTGGGCTGGGGA.............................................................................................................................................................................................................................................................221.000.00--------------------------------------------------1.00--------------
..........................................................................................................................................................................................................................................................................................AGCTGGACCTGCGGGAAGAC.......................201.000.00-------------------------------------------------1.00---------------
............................................................CTGGGCTGGGTTGGGCATT......................................................................................................................................................................................................................................................191.000.00---------------1.00-------------------------------------------------
.......................................................CTGGGCTGGGCTGGGTTGGGCCA.......................................................................................................................................................................................................................................................231.000.00---------------------------------------------1.00-------------------
..................................................GTGGGCTGGGCTGGGCTGGGATA............................................................................................................................................................................................................................................................231.000.00------------------------------------------1.00----------------------
.....................................................................................................................................................................................................................................................................................................CGGGAGCCTGCGCTGGGCCAGGGCAGCT....2811.001.00---------------------1.00-------------------------------------------
...................................................................................................................................................................................................................................................................................CAGTACGAGCTGGACCTGCGGGAG..........................2411.001.00-------------------1.00---------------------------------------------
..................................................GTGGGCTGGGCTGGGCTGGGAG.............................................................................................................................................................................................................................................................221.000.00------------------------------------------------1.00----------------
..................................................GTGGGCTGGGCTGGGCTGGGAGAA...........................................................................................................................................................................................................................................................241.000.00----------------------------------------------------1.00------------
.........................................................................................................................................................................................................................................................................................................AGCCTGCGCTGGGCCAGGG.........1911.001.00----------------------------------1.00------------------------------
..................................................GTGGGCTGGGCTGGGCTGGTCG.............................................................................................................................................................................................................................................................221.000.00----1.00------------------------------------------------------------
.......................................................CTGGGCTGGGCTGGGTTGGGCTA.......................................................................................................................................................................................................................................................231.000.001.00----------------------------------------------------------------
..................................................GTGGGCTGGGCTGGGCTGGACCA............................................................................................................................................................................................................................................................231.000.00------------------------------------------------------1.00----------
...........................................................GCTGGGCTGGGTTGGGCAA.......................................................................................................................................................................................................................................................191.000.001.00----------------------------------------------------------------
..................................................GTGGGCTGGGCTGGGCTGTGC..............................................................................................................................................................................................................................................................211.000.00------------1.00----------------------------------------------------
..........................................................................................................................................................................................................................................................................................AGCTGGACCTGCGGGAGCCTG......................2111.001.00-------------------------------------------1.00---------------------
..............GGTCGGGCAGCGGTGGTCGG...................................................................................................................................................................................................................................................................................................201.000.00----------------------------------------------1.00------------------
............................................................................................................................................................................................................................................................................................................CTGCGCTGGGCCAGGGCAGCTTTTC2511.001.00----------1.00------------------------------------------------------
..................................................GTGGGCTGGGCTGGGCTGTG...............................................................................................................................................................................................................................................................201.000.00-----------------------------------------------1.00-----------------
................................................................................................................................................................................TGGGGCGTGGCGGGGTTC...................................................................................................................................181.000.00---------------------------------1.00-------------------------------
..............................................................................................................................................................................................................................................................CAGGACTCGCCCTTCTTCCAGCAGTACGAGCT.......................................3211.001.00------1.00----------------------------------------------------------
.................CGGGCAGCGGTGGCCA....................................................................................................................................................................................................................................................................................................1611.001.00------------------1.00----------------------------------------------
.................................................................................................................................................................................................................................................................................AGCAGTACGAGCTGGACCTGCGG.............................2311.001.00---------1.00-------------------------------------------------------
...........................................................................................................................................................................................................................................................................TCTTCCAGCAGTACGAGC........................................1811.001.00------1.00----------------------------------------------------------
..........GCCAGGTCGGGCAGCGGTGGCCAGGA.................................................................................................................................................................................................................................................................................................2611.001.00---------1.00-------------------------------------------------------
..................................................GTGGGCTGGGCTGGGCTGGGTAC............................................................................................................................................................................................................................................................231.000.00---------------------------------------------------1.00-------------
..................................................GTGGGCTGGGCTGGGCTGGGAAAG...........................................................................................................................................................................................................................................................241.000.00----------------------------1.00------------------------------------
........................................................TGGGCTGGGCTGGGTTGGGCAA.......................................................................................................................................................................................................................................................221.000.00-----1.00-----------------------------------------------------------
..................................................GTGGGCTGGGCTGGGCTGGGTAA............................................................................................................................................................................................................................................................231.000.00----------------------1.00------------------------------------------
................TCGGGCAGCGGTGGCCAGGAG................................................................................................................................................................................................................................................................................................2111.001.00------------------------1.00----------------------------------------
..................................................GTGGGCTGGGCTGGGCTGGTCAA............................................................................................................................................................................................................................................................231.000.00----1.00------------------------------------------------------------
..................................................GTGGGCTGGGCTGGGCTGGGGATT...........................................................................................................................................................................................................................................................241.000.00-----------------------1.00-----------------------------------------
.............................................................................................................................................................................................................................................................................................TGGACCTGCGGGAGC.........................1550.800.80------------------------------------------------------------0.400.200.20--
...........................................................................................................................................................................................................................................................................................GCTGGACCTGCGGGAGC.........................1720.500.50-------------------------------------------------------0.50---------
................................................AGGTGGGCTGGGCTGGGCTGG................................................................................................................................................................................................................................................................2120.500.50--------------------------0.50--------------------------------------
.............................................................................................................................................................................................................................................................................................................TGCGCTGGGCCAGGGCA.......1720.500.50--------------------------0.50--------------------------------------
.............................................................................................................................................................................................................................................................................................................TGCGCTGGGCCAGGGC........1630.330.33-0.33---------------------------------------------------------------
...................................................TGGGCTGGGCTGGGCTGGGTT.............................................................................................................................................................................................................................................................2160.170.17----------------------------------------------------------------0.17

Antisense strand
CTGGAGACCGGCCAGGTCGGGCAGCGGTGGCCAGGAGCGCTATGATGCAGGTGGGCTGGGCTGGGCTGGGTTGGGGGGAAATTGGTTTTAGGAGAGGCCTAGGCCCGGGGACTCTAGGCCTAGATCCAACTGGCGCCCGCAGCGTGAGCTCAGCAAGGTCCTAAGCCTCTCCGACATGGGGCGTGGCGGGGCCGCGGGGCTACCAGGTGGGACCTCTGACGCGCCGCCTTCGCCTTCGCCTTCGCCTTCGCCTCCAGGACTCGCCCTTCTTCCAGCAGTACGAGCTGGACCTGCGGGAGCCTGCGCTGGGCCAGGGCAGCTTTTC
....................................................(((((..((((((((..((((.(((....((((((...(((.((((((((.((...))...))))))))...)))))))))..))).))))...))))))))..)))))...(((((.((.((.......)))).))))).....................................................................................................................................
..................................................51............................................................................................................................................193..................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		TAX577745(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		TAX577580(Rovira)
total RNA. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR040007(GSM532892)
G601T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM379265(GSM379265)
Small RNA from endometrioid ovarian cancer tissue. (ovary)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038856(GSM458539)
D11. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR191455(GSM715565)
181genomic small RNA (size selected RNA from . (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR040041(GSM532926)
G612T. (cervix)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
...............................................................................................................................................................................................................................AGGCGAAGGCGAAGGCGG.................................................................................... 1822.502.50-------------------------------------1.00-------------------0.500.500.50-----
........................................................................................................................................................................................GGCGGGGCCGCGGGGGGGG.......................................................................................................................... 191.000.00---------------------------------------1.00-------------------------
............................................CCCAGCCCAGCCCACCTGCAT.................................................................................................................................................................................................................................................................... 2111.001.00----------------------------------------1.00------------------------
...............................................................................................................................................................................................................................GAAGGCGAAGGCGAAGGCGG.................................................................................. 2011.001.00--------------------------------------------1.00--------------------
.........................................................................................................................AGATCCAACTGGCGCCTCTT........................................................................................................................................................................................ 201.000.00------------------------------1.00----------------------------------
.................................................................................................................................................GAGCTCAGCAAGGTCCTAAGTG.............................................................................................................................................................. 221.000.00---------------------------1.00-------------------------------------
................................................................................................................................................................................................................................AAGGCGAAGGCGAAGGCG................................................................................... 1850.800.80---------------0.80-------------------------------------------------
..............................................................................................................................................................................................................................AGGCGAAGGCGAAGGCGGC.................................................................................... 1920.500.50----------------0.50------------------------------------------------
...............................................................................................................................................................................................................................AAGGCGAAGGCGAAGGCGG................................................................................... 1920.500.50--------------------------------------------------------0.50--------
.................................................................TTTCCCCCCAACCCAG.................................................................................................................................................................................................................................................... 1650.200.20---------------------------------------------------------------0.20-