ID: uc001nyj.2_intron_0_0_chr11_63953743_f.5p
GENE: (1)
chr11:63953693-63953942+


(1)
AGO1.ip 		(5)
AGO2.ip 		(11)
B-CELL 		(7)
BRAIN 		(20)
BREAST 		(31)
CELL-LINE 		(14)
CERVIX 		(4)
HEART 		(3)
HELA 		(1)
KIDNEY 		(7)
LIVER 		(1)
OTHER 		(27)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GGACGGATTCGATTCAACGGGGTTCCGGACCGCGCTGCGCTATGGAGCAGGTGAAGGGGGAGGGGCGGGCTGAGGCCCCGAGCCTGCTCGGGGACCGGCGGTGGCCAGGCCGCGGTAGGGGGGCGGGGCGGGCGCCGGATCCAGGAGACCGGAGCTCGGCGCTGGGGCCGGACGGGGCGGCGGCGGGGAGGTGAGGGCCGCGGGCGGCGGGCGGGAGCGGGATCTTTAGCGAGGCCGGCCGCGGGGAGCG
.................................................................((((((...((((((..(((((.((.((.(((((....))).)))).)))))))....)))))).))).))).................................................................................................................
..................................................51.......................................................................................140............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR040019(GSM532904)
G701T. (cervix)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR040029(GSM532914)
G026T. (cervix)		SRR040031(GSM532916)
G013T. (cervix)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR040015(GSM532900)
G623T. (cervix)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR040011(GSM532896)
G529T. (cervix)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR040007(GSM532892)
G601T. (cervix)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		GSM532876(GSM532876)
G547T. (cervix)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577740(Rovira)
total RNA. (breast)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189785SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		TAX577743(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR040034(GSM532919)
G001N. (cervix)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR040040(GSM532925)
G612N. (cervix)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR029124(GSM416753)
HeLa. (hela)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR040016(GSM532901)
G645N. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR038858(GSM458541)
MEL202. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR029127(GSM416756)
A549. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		GSM532879(GSM532879)
G659N. (cervix)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR444063(SRX128911)
Sample 20cDNABarcode: AF-PP-333: ACG CTC TTC . (cell line)
.....................................................................................................................GGGGGGCGGGGCGGGCTGT..................................................................................................................1975.000.0018.00-2.00-9.007.007.00--6.005.005.00---2.003.00---1.003.00----2.00----------1.00------------------------------------1.001.00------------------1.00---------1.00--------------------------
..ACGGATTCGATTCAACGGGG....................................................................................................................................................................................................................................20113.0013.00--------------2.00--3.003.001.00------------------1.00-------2.00---------------------------------------1.00--------------------------------------------
........................................................GGGGAGGGGCGGGCTGAGGATC............................................................................................................................................................................2211.000.00---11.00-------------------------------------------------------------------------------------------------------------------------------
..ACGGATTCGATTCAACGG......................................................................................................................................................................................................................................18110.0010.00-------------1.00-1.00-1.00------------1.001.00---1.00-------------------------------------------1.00--------1.00--1.00-----------------------------1.00---------
............................................................................................................................................................................CGGGGCGGCGGCGGGGGGA...........................................................196.000.00--2.00----3.00------------------------------------------------------1.00--------------------------------------------------------------------
...............AACGGGGTTCCGGACCG..........................................................................................................................................................................................................................1716.006.00-5.00--------------------------------------------------------------1.00------------------------------------------------------------------
.................CGGGGTTCCGGACCGCG........................................................................................................................................................................................................................1714.004.00--1.00----1.00--------------1.00------------------------------------------------------1.00-----------------------------------------------------
.GACGGATTCGATTCAACGGGG....................................................................................................................................................................................................................................2114.004.00-------------1.00-----------1.00---------------1.00-----------------------1.00-----------------------------------------------------------------
.GACGGATTCGATTCAACGGG.....................................................................................................................................................................................................................................2014.004.00--------2.00--------------------------------------------------1.00------------------1.00----------------------------------------------------
...CGGATTCGATTCAACGGGG....................................................................................................................................................................................................................................1914.004.00-------------1.00--------2.00---------------------1.00--------------------------------------------------------------------------------------
..ACGGATTCGATTCAACGGG.....................................................................................................................................................................................................................................1913.003.00--------------1.00---------------------1.00-------------------------------------------1.00--------------------------------------------------
................ACGGGGTTCCGGACCGCG........................................................................................................................................................................................................................1813.003.00-2.00------------------------------------------------1.00--------------------------------------------------------------------------------
......ATTCGATTCAACGGGGTT..................................................................................................................................................................................................................................1813.003.00--------------1.00----------------------------------1.00-----------------------------------------------1.00---------------------------------
..ACGGATTCGATTCAACGGGGT...................................................................................................................................................................................................................................2113.003.00-------------------------------1.00--------------------1.00-------------1.00----------------------------------------------------------------
..................GGGGTTCCGGACCGCGCTGCGCTATG..............................................................................................................................................................................................................2613.003.00-----------------------3.00-----------------------------------------------------------------------------------------------------------
.....................................................................................................................GGGGGGCGGGGCGGGCTGTC.................................................................................................................203.000.002.00------1.00---------------------------------------------------------------------------------------------------------------------------
....................................................................................................................AGGGGGGCGGGGCGGTCT....................................................................................................................183.000.00--------2.00----------------------------------------1.00---------------------------------------------------------------------------------
...CGGATTCGATTCAACGGG.....................................................................................................................................................................................................................................1813.003.00------------1.00---------------1.00--------------------------------------------1.00---------------------------------------------------------
..............CAACGGGGTTCCGGACCGCGCTGC....................................................................................................................................................................................................................2412.002.00-------------------1.00-------------------------------------------1.00-------------------------------------------------------------------
...........................................................................................................................CGGGGCGGGCGCCGGCGGC............................................................................................................1902.002.00-------1.00--------------------------------------------------1.00------------------------------------------------------------------------
............TTCAACGGGGTTCCGGACCG..........................................................................................................................................................................................................................2012.002.00-2.00---------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................GGTAGGGGGGCGGGGCGGA......................................................................................................................192.000.00---------------------------------------1.00---1.00---------------------------------------------------------------------------------------
........................CCGGACCGCGCTGCGC..................................................................................................................................................................................................................1612.002.00--1.00---------1.00----------------------------------------------------------------------------------------------------------------------
...................GGGTTCCGGACCGCGCTGCGC..................................................................................................................................................................................................................2112.002.00----------------------------------2.00------------------------------------------------------------------------------------------------
.......................TCCGGACCGCGCTGCGC..................................................................................................................................................................................................................1712.002.00--2.00--------------------------------------------------------------------------------------------------------------------------------
................ACGGGGTTCCGGACCG..........................................................................................................................................................................................................................1612.002.00---------------------------------------------------2.00-------------------------------------------------------------------------------
...CGGATTCGATTCAACGG......................................................................................................................................................................................................................................1712.002.00-1.00-----------------------------------------------------------------------------------------------------------------1.00---------------
....................................................................................................................AGGGGGGCGGGGCGGTAT....................................................................................................................182.000.00--------2.00--------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................GCGGGGCGGGCGCCGGCGGC............................................................................................................202.000.00-------1.00-------------------------------------------------------------1.00-------------------------------------------------------------
...............AACGGGGTTCCGGACCGCG........................................................................................................................................................................................................................1912.002.00-2.00---------------------------------------------------------------------------------------------------------------------------------
.GACGGATTCGATTCAACGG......................................................................................................................................................................................................................................1912.002.00-------------1.00----------------------------------------------------------1.00----------------------------------------------------------
...........................................................................................................................CGGGGCGGGCGCCGG................................................................................................................1502.002.00------------------------------------------1.001.00---------------------------------------------------------------------------------------
.....................................................................................................................GGGGGGCGGGGCGGGCTGTA.................................................................................................................202.000.00---------------1.00----------1.00--------------------------------------------------------------------------------------------------------
...............AACGGGGTTCCGGACCGC.........................................................................................................................................................................................................................1812.002.00-1.00------------------------------------------------1.00--------------------------------------------------------------------------------
...............AACGGGGTTCCGGACCAT.........................................................................................................................................................................................................................181.000.00----------------------------------------------------------------------1.00------------------------------------------------------------
........................CCGGACCGCGCTGCG...................................................................................................................................................................................................................1511.001.00------------------------------------------------------------------------------------1.00----------------------------------------------
.........................................................................................................................................................................GGACGGGGCGGCGGCG.................................................................1611.001.00--------------------------------------------------------1.00--------------------------------------------------------------------------
.....................................................................................................................GGGGGGCGGGGCGGGCGT...................................................................................................................181.000.00---------------------------------------------------------------------------------------------------------------1.00-------------------
.............TCAACGGGGTTCCGGACC...........................................................................................................................................................................................................................1811.001.00--------------------------------------------1.00--------------------------------------------------------------------------------------
................................................................................................................................................................................................GAGGGCCGCGGGCGGACTG.......................................191.000.00-----------------------------1.00-----------------------------------------------------------------------------------------------------
............................................................................................................................................................................CGGGGCGGCGGCGGGGGCA...........................................................191.000.00--------------------1.00--------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................TCTTTAGCGAGGCCGGCCGCGGGGAG..2611.001.00---------------------------------------------------------------------------------------------------1.00-------------------------------
..................................................................................................................GTAGGGGGGCGGGGCGGACT....................................................................................................................201.000.00--------------------------------1.00--------------------------------------------------------------------------------------------------
.....................................................................................................................GGGGGGCGGGGCGGGCGCCGCC...............................................................................................................221.000.00--------------------------------------------------------------------------------------------------------------1.00--------------------
......................................................................................................................................................................GCCGGACGGGGCGGCAGCC.................................................................191.000.00--------------------------------------------------------------------------------------------------------------------1.00--------------
............................................................................................................................................................................CGGGGCGGCGGCGGGGGGGG..........................................................201.000.00------------------------------------------------------1.00----------------------------------------------------------------------------
...CGGATTCGATTCAACGGGGTT..................................................................................................................................................................................................................................2111.001.00------------------------------1.00----------------------------------------------------------------------------------------------------
..............CAACGGGGTTCCGGACCACG........................................................................................................................................................................................................................201.000.00-----------------------------------------------------------------------------------1.00-----------------------------------------------
................ACGGGGTTCCGGACCGCGCTGCGCC.................................................................................................................................................................................................................251.000.00--------------------------------------------------------------------------------------------1.00--------------------------------------
............TTCAACGGGGTTCCGG..............................................................................................................................................................................................................................1611.001.00------------1.00----------------------------------------------------------------------------------------------------------------------
......ATTCGATTCAACGGGGTTCCG...............................................................................................................................................................................................................................2111.001.00------------------------------------------------------------1.00----------------------------------------------------------------------
.....................GTTCCGGACCGCGCTG.....................................................................................................................................................................................................................1611.001.00------------1.00----------------------------------------------------------------------------------------------------------------------
.....................................................................................................................GGGGGGCGGGGCGGGTTTT..................................................................................................................191.000.00---------1.00-------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................GGCGGGGCGGGCGCCGGTGGC............................................................................................................211.000.00---------------------------------------------------------------------------------------------1.00-------------------------------------
................................................................GCGGGCTGAGGCCCCGAGCCTGCTCGGGGACC..........................................................................................................................................................3211.001.00-----------------------------------------------1.00-----------------------------------------------------------------------------------
....GGATTCGATTCAACGGGGTTA.................................................................................................................................................................................................................................211.000.00----------------------------------------------------------------------------------------------------------------------1.00------------
.........................................................................................................................................................................GGACGGGGCGGCGGCGCGG..............................................................1911.001.00---------------------------------------------------------1.00-------------------------------------------------------------------------
......................................................................................................................................................................................................CGCGGGCGGCGGGCGTCTG.................................191.000.00--------------------------------------------------------------------------------------------------------------------------1.00--------
..............CAACGGGGTTCCGGACCGCGCTGCG...................................................................................................................................................................................................................2511.001.00---------------------------------------------------------------------------------------1.00-------------------------------------------
...............................................CAGGTGAAGGGGGAGGGGC........................................................................................................................................................................................1911.001.00------------------------------------------------1.00----------------------------------------------------------------------------------
..ACGGATTCGATTCAACTGG.....................................................................................................................................................................................................................................191.000.00--------------1.00--------------------------------------------------------------------------------------------------------------------
...................................................................................................................TAGGGGGGCGGGGCGGA......................................................................................................................171.000.00-------------------------------------1.00---------------------------------------------------------------------------------------------
................................................................................................................CGGTAGGGGGGCGGGGCGGGCGCCGG................................................................................................................2611.001.00------------------------1.00----------------------------------------------------------------------------------------------------------
......ATTCGATTCAACGGGGTTC.................................................................................................................................................................................................................................1911.001.00-----------------------------------1.00-----------------------------------------------------------------------------------------------
..ACGGATTCGATTCAACGGAA....................................................................................................................................................................................................................................2011.0010.00-----------------------------------------------------------------------------------------------------------1.00-----------------------
............................................................................................................................................................................CGGGGCGGCGGCGGGTAG............................................................181.000.00----------------1.00------------------------------------------------------------------------------------------------------------------
.....................................................................................................................GGGGGGCGGGGCGGGCTGTT.................................................................................................................201.000.00-------------------------------------------------------------------------------------1.00---------------------------------------------
..............................CGCGCTGCGCTATGGAGC..........................................................................................................................................................................................................1811.001.00-------------------------------------------------------------1.00---------------------------------------------------------------------
.................CGGGGTTCCGGACCGCGC.......................................................................................................................................................................................................................1811.001.00-------------------------------------------------------------------1.00---------------------------------------------------------------
............................................................................CCCGAGCCTGCTCGGGGA............................................................................................................................................................1811.001.00------------------------------------------------------------------------------------------------------------1.00----------------------
.......TTCGATTCAACGGGGTT..................................................................................................................................................................................................................................1711.001.00-1.00---------------------------------------------------------------------------------------------------------------------------------
.......TTCGATTCAACGGGGTTCCGGACCGCGCT......................................................................................................................................................................................................................2911.001.00------------------------1.00----------------------------------------------------------------------------------------------------------
........TCGATTCAACGGGGTTCCGGA.............................................................................................................................................................................................................................2111.001.00------------------------------------------------------------------------------------------------------------------1.00----------------
......................................................................................................................................................................................................CGCGGGCGGCGGGCGGGCGCC...............................211.000.00----------------------------------------------------------------------------------------------------------1.00------------------------
.....................................................................................................................GGGGGGCGGGGCGGGCGCCGGCGGC............................................................................................................251.000.00-------1.00---------------------------------------------------------------------------------------------------------------------------
................................................................GCGGGCTGAGGCCCCGCC........................................................................................................................................................................181.000.00-----------------------------------------------------------------------1.00-----------------------------------------------------------
.........CGATTCAACGGGGTTCCGGACCG..........................................................................................................................................................................................................................2311.001.00----------------------------------------------------------------------------------------------------1.00------------------------------
........................CCGGACCGCGCTGCGCTATGG.............................................................................................................................................................................................................2111.001.00--------------------1.00--------------------------------------------------------------------------------------------------------------
.....................................................................................................................GGGGGGCGGGGCGGGCTAT..................................................................................................................191.000.00------1.00----------------------------------------------------------------------------------------------------------------------------
...........................GACCGCGCTGCGCTATGGAGC..........................................................................................................................................................................................................2111.001.00-----------------------------------------------------------------------------------------------1.00-----------------------------------
....................................................................................................................AGGGGGGCGGGGCGGGCT....................................................................................................................181.000.00--------1.00--------------------------------------------------------------------------------------------------------------------------
......ATTCGATTCAACGGGGTTCCGGACCGC.........................................................................................................................................................................................................................2711.001.00------------------1.00----------------------------------------------------------------------------------------------------------------
...CGGATTCGATTCAACGGGGTTC.................................................................................................................................................................................................................................2211.001.00--------------------------------------1.00--------------------------------------------------------------------------------------------
...........ATTCAACGGGGTTCCGGACCGCGCTGC....................................................................................................................................................................................................................2711.001.00------------1.00----------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................CGGGGCGGCGGCGGGTGT............................................................181.000.00----------------------------------------------------------------------------1.00------------------------------------------------------
..ACGGATTCGATTCAACGGGGTT..................................................................................................................................................................................................................................2211.001.00-------------1.00---------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................GGACGGGGCGGCGGCGGCGGC............................................................211.000.00--------------------------------------------------------------------------------------------------1.00--------------------------------
....GGATTCGATTCAACGGGG....................................................................................................................................................................................................................................1811.001.00-1.00---------------------------------------------------------------------------------------------------------------------------------
..............................................................GGGCGGGCTGAGGCCCCGCAGT......................................................................................................................................................................221.000.00-----------------------------1.00-----------------------------------------------------------------------------------------------------
..................................................................GGGCTGAGGCCCCGAGCCTGCTCGGGG.............................................................................................................................................................2711.001.00---------------------------------1.00-------------------------------------------------------------------------------------------------
.............................................................................................................................................................................GGGGCGGCGGCGGGGATT...........................................................181.000.00---------------------------1.00-------------------------------------------------------------------------------------------------------
............................................................................................................................................................................CGGGGCGGCGGCGGGCCG............................................................181.000.00-----------------------------------------------------------------------------------------------------------------1.00-----------------
...................................................................................................................................................................................................GGCCGCGGGCGGCGGGGCGG...................................201.000.00------------------------------------------------------------------------------------------------------------------------1.00----------
............................................................................................................................................................................CGGGGCGGCGGCGGGGGGG...........................................................191.000.00--1.00--------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................CGGGATCTTTAGCGAGGC...............1811.001.00------------------------------------1.00----------------------------------------------------------------------------------------------
............................................................................................................................................................................CGGGGCGGCGGCGGGGGTG...........................................................191.000.00---------------------------------------------------------------------------------------------------------------------------1.00-------
.........................CGGACCGCGCTGCGCTATG..............................................................................................................................................................................................................1911.001.00---------------------------------1.00-------------------------------------------------------------------------------------------------
............TTCAACGGGGTTCCGGACCGCG........................................................................................................................................................................................................................2211.001.00-------------------1.00---------------------------------------------------------------------------------------------------------------
...................................................................................................................TAGGGGGGCGGGGCGGAC.....................................................................................................................181.000.00---------------------------------------1.00-------------------------------------------------------------------------------------------
............................................................................................................................................................................CGGGGCGGCGGCGGGGGT............................................................181.000.00------------------------------------------------1.00----------------------------------------------------------------------------------
..............CAACGGGGTTCCGGACCGCGCTG.....................................................................................................................................................................................................................2311.001.00-------------------1.00---------------------------------------------------------------------------------------------------------------
.............................................................GGGGCGGGCTGAGGCGG............................................................................................................................................................................171.000.00-----------------------------------------------------1.00-----------------------------------------------------------------------------
.....................................................................................................................GGGGGGCGGGGCGGGCGTG..................................................................................................................191.000.001.00----------------------------------------------------------------------------------------------------------------------------------
......................TTCCGGACCGCGCTGCGCTATGGAGCAGG.......................................................................................................................................................................................................2911.001.00-------------------------------------------------------1.00---------------------------------------------------------------------------
.....................................................................................................................GGGGGGCGGGGCGGGCGGGT.................................................................................................................201.000.00-----1.00-----------------------------------------------------------------------------------------------------------------------------
..................................................................................................................GTAGGGGGGCGGGGCGGACTG...................................................................................................................211.000.00----------------------------1.00------------------------------------------------------------------------------------------------------
..............CAACGGGGTTCCGGACCG..........................................................................................................................................................................................................................1811.001.00-1.00---------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................CGGGGCGGGCGCCGGCT..............................................................................................................1701.002.00-----------------------------------------------1.00-----------------------------------------------------------------------------------
...............................................................................................................................................................................GGCGGCGGCGGGGAG............................................................1501.001.00---------------------------------------------1.00-------------------------------------------------------------------------------------
..............CAACGGGGTTCCGGACCGCGTT......................................................................................................................................................................................................................221.000.00-------------------------1.00---------------------------------------------------------------------------------------------------------
.....................................................................................................................GGGGGGCGGGGCGGGTCGG..................................................................................................................191.000.001.00----------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................CGGGGCGGCGGCGGGGGGAG..........................................................201.000.00--1.00--------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................GGGGCGGCGGCGGGGATC...........................................................181.000.00---1.00-------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................GTAGGGGGGCGGGGCGGAC.....................................................................................................................191.000.00----------------------------------------1.00------------------------------------------------------------------------------------------
............................ACCGCGCTGCGCTATGGAG...........................................................................................................................................................................................................1911.001.00---------------------------------------------------------------------------------1.00-------------------------------------------------
.......TTCGATTCAACGGGGTTC.................................................................................................................................................................................................................................1811.001.00-1.00---------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................GGTAGGGGGGCGGGGCGGTCAC...................................................................................................................221.000.00--------------------------------1.00--------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................GGCCGCGGGCGGCGGAGGG....................................191.000.00----------------------------------------------------------------------------------1.00------------------------------------------------
..................GGGGTTCCGGACCGCGCTGC....................................................................................................................................................................................................................2011.001.00-1.00---------------------------------------------------------------------------------------------------------------------------------
..............................................................................CGAGCCTGCTCGGGGACCGG........................................................................................................................................................2011.001.00---------------------------------------------------------------------------------------------------------1.00-------------------------
.....................................................................................................................GGGGGGCGGGGCGGGCGTCTA................................................................................................................211.000.00---------------------------1.00-------------------------------------------------------------------------------------------------------
.................................................................................................................GGTAGGGGGGCGGGGCGGACT....................................................................................................................211.000.00---------------------------------------------1.00-------------------------------------------------------------------------------------
......................................................................................................................................................................................................CGCGGGCGGCGGGCGTTAA.................................191.000.00-----------------------------------------------------------------------------------------1.00-----------------------------------------
..................GGGGTTCCGGACCGCGC.......................................................................................................................................................................................................................1711.001.00-1.00---------------------------------------------------------------------------------------------------------------------------------
.................................................................................GCCTGCTCGGGGACCGGC.......................................................................................................................................................1820.500.50----------------------------------------------------------------------------------------------------------------------------0.50------
..........................................................................................................................................................................GACGGGGCGGCGGCG.................................................................1540.500.50-------------------------------------------------------------------------------------------------------------------------------0.250.25--
........................................................GGGGAGGGGCGGGCTGAGGC..............................................................................................................................................................................2020.500.50-----------------------------------------------------------------------------------------------------------------------------0.50-----
.............................................................................................................................................................................GGGGCGGCGGCGGGGAGG...........................................................1820.500.500.50----------------------------------------------------------------------------------------------------------------------------------
................................................AGGTGAAGGGGGAGGGG.........................................................................................................................................................................................1740.250.25---------------------------------------------------------------------------------------------------------------------------------0.25-
..............................................................................................................................................................................GGGCGGCGGCGGGGAGG...........................................................1740.250.25---------------------------0.25-------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................GCGGGCGGGAGCGGGA............................1650.200.20----------------------------------------------------------------------------------------------------------------------------------0.20

Antisense strand
GGACGGATTCGATTCAACGGGGTTCCGGACCGCGCTGCGCTATGGAGCAGGTGAAGGGGGAGGGGCGGGCTGAGGCCCCGAGCCTGCTCGGGGACCGGCGGTGGCCAGGCCGCGGTAGGGGGGCGGGGCGGGCGCCGGATCCAGGAGACCGGAGCTCGGCGCTGGGGCCGGACGGGGCGGCGGCGGGGAGGTGAGGGCCGCGGGCGGCGGGCGGGAGCGGGATCTTTAGCGAGGCCGGCCGCGGGGAGCG
.................................................................((((((...((((((..(((((.((.((.(((((....))).)))).)))))))....)))))).))).))).................................................................................................................
..................................................51.......................................................................................140............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR040019(GSM532904)
G701T. (cervix)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR040029(GSM532914)
G026T. (cervix)		SRR040031(GSM532916)
G013T. (cervix)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR040015(GSM532900)
G623T. (cervix)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR040011(GSM532896)
G529T. (cervix)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR040007(GSM532892)
G601T. (cervix)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		GSM532876(GSM532876)
G547T. (cervix)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577740(Rovira)
total RNA. (breast)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189785SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		TAX577743(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR040034(GSM532919)
G001N. (cervix)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR040040(GSM532925)
G612N. (cervix)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR029124(GSM416753)
HeLa. (hela)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR040016(GSM532901)
G645N. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR038858(GSM458541)
MEL202. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR029127(GSM416756)
A549. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		GSM532879(GSM532879)
G659N. (cervix)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR444063(SRX128911)
Sample 20cDNABarcode: AF-PP-333: ACG CTC TTC . (cell line)
.........................................................................................................................GGCGGGGCGGGCGCCGGGG.............................................................................................................. 193.000.00--------------------------------------------------------------------1.00---------------------1.00--------------------------1.00-------------
...........................................................................................................GGCCGCGGTAGGGGGGGC............................................................................................................................. 181.000.00----------1.00------------------------------------------------------------------------------------------------------------------------
....................................................................................................................AGGGGGGCGGGGCGGGCGCCGT................................................................................................................ 221.000.00----------------------------------------1.00------------------------------------------------------------------------------------------
........................................................................................CGGGGACCGGCGGTGGGCCC.............................................................................................................................................. 201.000.00--1.00--------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................GGGGCGGCGGCGGGGAGCCC......................................................... 201.000.00------------------------------------------------------------------------------------------------1.00----------------------------------
.......................CCATAGCGCAGCGCGGTCCGGA............................................................................................................................................................................................................. 2211.001.00-----------------------------------------1.00-----------------------------------------------------------------------------------------
........................................................................................................................................................................................................CGGGCGGCGGGCGGGTC................................. 171.000.00-------------------------------------------------------------------------------------------------------------1.00---------------------
.....................................................................................................................GGGGGGCGGGGCGGGCGCCGT................................................................................................................ 211.000.00-----------------------------------------------------------------------------------------------------1.00-----------------------------
........................................................................................CGGGGACCGGCGGTGGCCC............................................................................................................................................... 191.000.00-----------------------------------------------------------------------------------------------------------------------1.00-----------
........................................................................................CGGGGACCGGCGGTGGC................................................................................................................................................. 171.000.00--1.00--------------------------------------------------------------------------------------------------------------------------------
...............................................CAGGTGAAGGGGGAGTGGG........................................................................................................................................................................................ 191.000.00------------------------------------------------------------------------------------------------------1.00----------------------------
.....................................................................................................................GGGGGGCGGGGCGGGCCGGC................................................................................................................. 201.000.00-------------------------1.00---------------------------------------------------------------------------------------------------------
..........................................................................................................................GCGGGGCGGGCGCCGGGGG............................................................................................................. 191.000.00----------------------------------------------------------------------------------------------------------------1.00------------------
.........................................................................................................................GGCGGGGCGGGCGCCGGGGGG............................................................................................................ 211.000.00-------------------------------------------------------------------------------------------------------1.00---------------------------
....................................................................................................................................................................GGGCCGGACGGGGCGGGG.................................................................... 181.000.00----------------------------------------------------1.00------------------------------------------------------------------------------
.......................................................................................................................................................................................................CCCGCCCGCCGCCCGC................................... 1601.001.00------------------------------------------1.00----------------------------------------------------------------------------------------
..........................................................................................................................................................................GACGGGGCGGCGGCGGGGCT............................................................ 201.000.00------------------------1.00----------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................CCTCCCCGCCGCCGCCCC........................................................... 1820.500.50------------------------------------------------------------------------------------------------------------------------------0.50----