ID: uc001nwb.2_intron_11_0_chr11_62655691_f
GENE: (12)
chr11:62655641-62655852+


(1)
AGO1.ip 		(1)
AGO2.ip 		(8)
B-CELL 		(4)
BRAIN 		(5)
BREAST 		(25)
CELL-LINE 		(2)
FIBROBLAST 		(4)
HEART 		(6)
HELA 		(1)
KIDNEY 		(2)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(20)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
CCAGCTTCCCTGACATCCCAGGGGCTGTAAGTGCCAACATGACTGTGAAGGTAAGAGTTCTAGATGGGTAGAAACTGACCGGTGGAGGGTGGGCTGGGCTTGTAGAAGTCTGTACCCAGGGGAGCCCCTCACACGCTTCTGCTATGTTTTTATCATTCTTAGGGCCAGAGTGAAGACCCTGGCTCCCTCCTTTCCTTGTTCCGGCGGCTGAG
......................................................(((.(((((...........((.(((.......))).))))))))))...............................................................................................................
..................................................51.................................................102............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR553575(SRX182781)
source: Kidney. (Kidney)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM956925PAZD5SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191527(GSM715637)
128genomic small RNA (size selected RNA from . (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038862(GSM458545)
MM472. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................................................................................................................................AGAGTGAAGACCCTGGCT............................18133.0033.0030.00-----1.00----------------------------1.00---------------------------------1.00-------------
.................................CCAACATGACTGTGAAG..................................................................................................................................................................17127.0027.00---2.00----2.00-2.00---2.00-2.00-1.001.001.00-2.00--2.00-2.00--2.002.00------1.00-------1.00-------------------1.00----1.00-----------
..................................................GTAAGAGTTCTAGATGGGTAGAAACTGACCGGTGGAGGGTGGGCTGGGCTTGTAGAAGTCTGTACCCAGGGGAGCCCCTCA.................................................................................81111.0011.00--11.00--------------------------------------------------------------------------------
....................GGGGCTGTAAGTGCCAACATGACTGTGAAGGGC...............................................................................................................................................................339.000.00-9.00---------------------------------------------------------------------------------
................................GCCAACATGACTGTGAAG..................................................................................................................................................................1819.009.00---4.00-1.00----1.00----------------------1.00--------------1.00------------------1.00---------------
..................................................GTAAGAGTTCTAGATGGGTAGAAACTGACCGGTGGAGGGTGGGCTGGGCTTGTAGAAGTCTGTACCCAGGGGAGCCCCTCAC................................................................................8217.007.00--7.00--------------------------------------------------------------------------------
...........GACATCCCAGGGGCTGTAAG.....................................................................................................................................................................................2017.007.00---7.00-------------------------------------------------------------------------------
.......................................................................................GGTGGGCTGGGCTTGTAGAAGTCTGTACCCAGGGGAGCCCCTCACACGCTTCTGCTATGTTTTTATCATTCTTAG..................................................7516.006.00--6.00--------------------------------------------------------------------------------
...................AGGGGCTGTAAGTGCCAACATGACTGTGAAGGG................................................................................................................................................................336.000.00----5.00-----------------------------1.00------------------------------------------------
...................................AACATGACTGTGAAGGGCC..............................................................................................................................................................195.000.001.00---1.00----------------1.00----1.00--------------------------------------1.00-----------------
.......................................................................................................................................................................GAGTGAAGACCCTGGCTC...........................1815.005.00------3.00----------------------2.00-----------------------------------------------------
..................................................GTAAGAGTTCTAGATGGG................................................................................................................................................1815.005.00---4.00----1.00--------------------------------------------------------------------------
..........................GTAAGTGCCAACATGACTGTGAAG..................................................................................................................................................................2414.004.00-----4.00-----------------------------------------------------------------------------
..................CAGGGGCTGTAAGTGCCAACATG...........................................................................................................................................................................2314.004.00-----3.00----------------------------------------------------1.00------------------------
...................................AACATGACTGTGAAGGGC...............................................................................................................................................................184.000.00-4.00---------------------------------------------------------------------------------
..................................CAACATGACTGTGAAGGGC...............................................................................................................................................................193.000.00-2.00------------------------------------------------------1.00--------------------------
...................AGGGGCTGTAAGTGCCAACATGACTGTGAAGGGC...............................................................................................................................................................343.000.00-1.00--2.00------------------------------------------------------------------------------
..................CAGGGGCTGTAAGTGCCAACATGACTGTGAAGGG................................................................................................................................................................343.000.00----3.00------------------------------------------------------------------------------
..................................................GTAAGAGTTCTAGATGGGTAGAAACTGACCGGTGGAGGGTGGGCTGGGCTTGTAGAAGTCTGTACCCAGGGGAGCCCCTCACACGCTTCTGCTTTT..................................................................963.000.00-------------3.00---------------------------------------------------------------------
....................GGGGCTGTAAGTGCCAACATGACTGTGAAGGGCC..............................................................................................................................................................343.000.00-1.00--2.00------------------------------------------------------------------------------
............ACATCCCAGGGGCTGTAAGTGC..................................................................................................................................................................................2213.003.00-------1.00----------1.00---------1.00------------------------------------------------------
..................................................GTAAGAGTTCTAGATGA.................................................................................................................................................173.000.00---3.00-------------------------------------------------------------------------------
...............................................................................CGGTGGAGGGTGGGCTGGG..................................................................................................................1922.502.50---2.50-------------------------------------------------------------------------------
..............ATCCCAGGGGCTGTAAGTGC..................................................................................................................................................................................2012.002.00----------------------------1.00---------------1.00--------------------------------------
.................CCAGGGGCTGTAAGTGC..................................................................................................................................................................................1712.002.00--------1.00--------1.00-----------------------------------------------------------------
.......................................................................................................................................................................GAGTGAAGACCCTGGCTCC..........................1912.002.00---------------------1.00----1.00--------------------------------------------------------
.............................AGTGCCAACATGACTGTGAAGGG................................................................................................................................................................232.000.00---------2.00-------------------------------------------------------------------------
........................................................................................GTGGGCTGGGCTTGTAGAAGTCTGTACCCAGGGGAGCCCCTCACACGCTTCTGCTATGTTTTTATCATTCTTAG..................................................7412.002.00--2.00--------------------------------------------------------------------------------
.................................CCAACATGACTGTGAAGG.................................................................................................................................................................1812.002.00---------------2.00-------------------------------------------------------------------
............................AAGTGCCAACATGACTGTGAAGGG................................................................................................................................................................242.000.00-2.00---------------------------------------------------------------------------------
.................................CCAACATGACTGTGAAGGG................................................................................................................................................................1912.002.001.00-----------1.00----------------------------------------------------------------------
...................................AACATGACTGTGAAGGGCCA.............................................................................................................................................................202.000.00------2.00----------------------------------------------------------------------------
...........GACATCCCAGGGGCTGTAAGTGC..................................................................................................................................................................................2312.002.00-2.00---------------------------------------------------------------------------------
....................GGGGCTGTAAGTGCCAACATGACTGTGAAGGG................................................................................................................................................................322.000.00-2.00---------------------------------------------------------------------------------
......................................................................................................................................................................AGAGTGAAGACCCTGGCTCCCT........................2212.002.002.00----------------------------------------------------------------------------------
........................................................................................................................................................................AGTGAAGACCCTGGCTCC..........................1812.002.00-------2.00---------------------------------------------------------------------------
...........................................................................................GGCTGGGCTTGTAGAAGTCTGTACCCAGGGG..........................................................................................3112.002.00--------------------------------2.00--------------------------------------------------
.................................................................................GTGGAGGGTGGGCTGGG..................................................................................................................1791.561.56---1.33------------------------------0.11-----------------------------------------------0.11
..................CAGGGGCTGTAAGTGCCAACA.............................................................................................................................................................................2111.001.00--------------------------------------------------1.00--------------------------------
.......................................................................................GGTGGGCTGGGCTTGTAGAAGTCTG....................................................................................................2511.001.00-----------------------1.00-----------------------------------------------------------
........................................................................................................................................................................AGTGAAGACCCTGGCTCCC.........................1911.001.00-1.00---------------------------------------------------------------------------------
........................CTGTAAGTGCCAACATGAC.........................................................................................................................................................................1911.001.001.00----------------------------------------------------------------------------------
.................................CCAACATGACTGTGAAGGGCC..............................................................................................................................................................2111.002.00--------------------------------------------------------------1.00--------------------
........................................................................................................................................................................AGTGAAGACCCTGGCTCCCTC.......................2111.001.001.00----------------------------------------------------------------------------------
..................................CAACATGACTGTGAAGGG................................................................................................................................................................181.000.00-----1.00-----------------------------------------------------------------------------
..................................................GTAAGAGTTCTAGATGGGTAGAAACT........................................................................................................................................2611.001.00------1.00----------------------------------------------------------------------------
...............................TGCCAACATGACTGTGAAGGGCC..............................................................................................................................................................231.000.00----1.00------------------------------------------------------------------------------
...........GACATCCCAGGGGCTGTAAGCGC..................................................................................................................................................................................2311.007.00-1.00---------------------------------------------------------------------------------
.................CCAGGGGCTGTAAGTGCC.................................................................................................................................................................................1811.001.00---------1.00-------------------------------------------------------------------------
......................GGCTGTAAGTGCCAACATGACTGTGAAGTGC...............................................................................................................................................................311.000.00-----------------1.00-----------------------------------------------------------------
..............ATCCCAGGGGCTGTAAAACA..................................................................................................................................................................................201.000.00------------------------1.00----------------------------------------------------------
..............................................................................................................................................................................................TTTCCTTGTTCCGGCGGCTGAG2211.001.00-------------------------------------------------------------1.00---------------------
..............ATCCCAGGGGCTGTAAGTTC..................................................................................................................................................................................201.000.00-----------------------------------------------------------1.00-----------------------
...................................................................................................................................CACGCTTCTGCTATGTTTTTATCATTCTTAG..................................................3111.001.00--------------------1.00--------------------------------------------------------------
..............................................................................................................................................................................................TTTCCTTGTTCCGGCGGCT...1911.001.00-------1.00---------------------------------------------------------------------------
...................AGGGGCTGTAAGTGCCAAC..............................................................................................................................................................................1911.001.00------------1.00----------------------------------------------------------------------
.........................................................................................................................................................................................CCTCCTTTCCTTGTTCCGGCGGC....2311.001.00-------------------------------------------------1.00---------------------------------
....................................ACATGACTGTGAAGGGCAA.............................................................................................................................................................191.000.001.00----------------------------------------------------------------------------------
................................GCCAACATGACTGTGAAGGGC...............................................................................................................................................................2111.001.00-1.00---------------------------------------------------------------------------------
.................CCAGGGGCTGTAAGTGCCAACATGACTGTGAAGGGC...............................................................................................................................................................361.000.00-1.00---------------------------------------------------------------------------------
..........................................................................................................................................................................TGAAGACCCTGGCTCCCTCCTTTCC.................2511.001.00-----------1.00-----------------------------------------------------------------------
..................CAGGGGCTGTAAGTGCCAC...............................................................................................................................................................................191.000.001.00----------------------------------------------------------------------------------
............................................................................................................................................................................AAGACCCTGGCTCCCTCCCTTC..................221.000.00-----------1.00-----------------------------------------------------------------------
................................................................................................................................................................................CCCTGGCTCCCTCCTTTCCTTGTTCCGGCGGC....3211.001.00-------------------------------------1.00---------------------------------------------
...................................AACATGACTGTGAAGGTAAGAGTTC........................................................................................................................................................2511.001.00----------------------------------------1.00------------------------------------------
......................................................................................................TAGAAGTCTGTACCCAGGGGAGCC......................................................................................2411.001.00------------------------------------------1.00----------------------------------------
.........CTGACATCCCAGGGGCTGT........................................................................................................................................................................................1911.001.00-------------------------------------------------------1.00---------------------------
............................AAGTGCCAACATGACTGTG.....................................................................................................................................................................1911.001.00---------1.00-------------------------------------------------------------------------
.................................................................................GTGGAGGGTGGGCTGGGCT................................................................................................................1911.001.00---------------------------------------------------1.00-------------------------------
..................CAGGGGCTGTAAGTGCCAA...............................................................................................................................................................................1911.001.001.00----------------------------------------------------------------------------------
.........................................................................................................................................................................GTGAAGACCCTGGCTCCCTC.......................2011.001.00-----------------------------------------------------1.00-----------------------------
..............................................................................................TGGGCTTGTAGAAGTCG.....................................................................................................171.000.00------------------------------------------------------------------------1.00----------
....................................ACATGACTGTGAAGGGGGG.............................................................................................................................................................191.000.00---------------------------------------------------------------1.00-------------------
....................................................................................................................................................................................GGCTCCCTCCTTTCCTTGTTCCGGC.......2511.001.00-1.00---------------------------------------------------------------------------------
.......................GCTGTAAGTGCCAACATGACTGTGA....................................................................................................................................................................2511.001.00-1.00---------------------------------------------------------------------------------
.................................................................GGGTAGAAACTGACCGGTG................................................................................................................................1911.001.00----------------------------------------------------------------------1.00------------
......................................................................................................................................................................AGAGTGAAGACCCTGGCTC...........................1911.001.00------1.00----------------------------------------------------------------------------
..................................................GTAAGAGTTCTAGATGGGTAGAAACTG.......................................................................................................................................2711.001.00----1.00------------------------------------------------------------------------------
...................................................................................GGAGGGTGGGCTGGGCTTGTAGAAGTCTGTACCCAGGGGAGCCCCTCACACGCTTCTGCTATGTTTTTATCATTCTTA...................................................7811.001.00------------------------------------------------------------1.00----------------------
.................CCAGGGGCTGTAAGTGCCAACATGAC.........................................................................................................................................................................2611.001.00-----1.00-----------------------------------------------------------------------------
.........................TGTAAGTGCCAACATGACTGTGAAGGG................................................................................................................................................................271.000.00-1.00---------------------------------------------------------------------------------
............................................................................................................................................................................................CCTTTCCTTGTTCCGGCGGC....2011.001.00-1.00---------------------------------------------------------------------------------
...................AGGGGCTGTAAGTGCCAA...............................................................................................................................................................................1821.001.001.00----------------------------------------------------------------------------------
.................................................................GGGTAGAAACTGACCGGTGGA..............................................................................................................................2111.001.00------------------------------------------------------1.00----------------------------
...........................................................................................................................................................................GAAGACCCTGGCTCCCTCCT.....................2011.001.001.00----------------------------------------------------------------------------------
............ACATCCCAGGGGCTGTAAGTGCCAAC..............................................................................................................................................................................2611.001.00-------------------------------------------1.00---------------------------------------
..................CAGGGGCTGTAAGTGCCAACATGACTGTGAAGGGC...............................................................................................................................................................351.000.00-1.00---------------------------------------------------------------------------------
............ACATCCCAGGGGCTGTAA......................................................................................................................................................................................1811.001.00----------------------------------------------------1.00------------------------------
...................................................................................................................................................................................................TTGTTCCGGCGGCTGAG1711.001.00---------------------------------------1.00-------------------------------------------
.....................................................................................................GTAGAAGTCTGTACCCAGGGGAGCCCCTCACACGCT...........................................................................3611.001.00-------------------------------------------------------------------------1.00---------
..........................................................................................GGGCTGGGCTTGTAGAAGTCTG....................................................................................................2211.001.00----------------------------------------------------------------1.00------------------
..........................................................................................................................................................................TGAAGACCCTGGCTCCCTCCTTTCCTTGTTCCGGC.......3511.001.00-1.00---------------------------------------------------------------------------------
............ACATCCCAGGGGCTGTAAAGGC..................................................................................................................................................................................2211.001.00---------------------------------------------1.00-------------------------------------
....................................................................................................TGTAGAAGTCTGTACCCA..............................................................................................1811.001.00------------------------------------1.00----------------------------------------------
.................................CCAACATGACTGTGAAGGGC...............................................................................................................................................................2011.002.00-----------------------------------------------1.00-----------------------------------
...............TCCCAGGGGCTGTAAGTGC..................................................................................................................................................................................1911.001.00----1.00------------------------------------------------------------------------------
.................................................................................................GCTTGTAGAAGTCTGTACCCAGGGGAGCC......................................................................................2911.001.00----1.00------------------------------------------------------------------------------
...........................................................................................................................................................................................TCCTTTCCTTGTTCCGGCGGC....2111.001.00-----------------------------------------1.00-----------------------------------------
...................AGGGGCTGTAAGTGCCAACATGACTGTGAAG..................................................................................................................................................................3111.001.00----1.00------------------------------------------------------------------------------
................................GCCAACATGACTGTGAAGG.................................................................................................................................................................1911.001.00-----1.00-----------------------------------------------------------------------------
......................................................................................................................................................................................CTCCCTCCTTTCCTTGTTCCGGCGG.....2511.001.00-1.00---------------------------------------------------------------------------------
........................CTGTAAGTGCCAACATGACTGTGAAG..................................................................................................................................................................2611.001.00----1.00------------------------------------------------------------------------------
............................................................................................................................................................................AAGACCCTGGCTCCCTCCTTTCC.................2311.001.00---------------------------------------------------------1.00-------------------------
............................................................................................GCTGGGCTTGTAGAAGTCTGTACCC...............................................................................................2511.001.00--------------------------------------------------------------------1.00--------------
...........................................................CTAGATGGGTAGAAACTGACCGG..................................................................................................................................2311.001.00-----------------------1.00-----------------------------------------------------------
....................GGGGCTGTAAGTGCCAACATGACTGTGAAGGGA...............................................................................................................................................................331.000.00-1.00---------------------------------------------------------------------------------
...................AGGGGCTGTAAGTGCCAAAA.............................................................................................................................................................................2021.001.00------------1.00----------------------------------------------------------------------
..........................................................................................................................................................................TGAAGACCCTGGCTCCCTCCTCTCC.................251.000.00-----------1.00-----------------------------------------------------------------------
.................................CCAACATGACTGTGAAGGTAAGAGT..........................................................................................................................................................2511.001.00-------------------1.00---------------------------------------------------------------
.....................GGGCTGTAAGTGCCAACATGACTGTGAAGGGCC..............................................................................................................................................................331.000.00----1.00------------------------------------------------------------------------------
.................................CCAACATGACTGTGAA...................................................................................................................................................................1630.670.67----------------0.33-----------------------------------------------------------0.33------
..................CAGGGGCTGTAAGTGC..................................................................................................................................................................................1630.670.67----0.33------------0.33-----------------------------------------------------------------
...................AGGGGCTGTAAGTGCC.................................................................................................................................................................................1630.670.67----0.67------------------------------------------------------------------------------
........CCTGACATCCCAGGGGC...........................................................................................................................................................................................1720.500.50---------------0.50-------------------------------------------------------------------
...................................................................GTAGAAACTGACCGG..................................................................................................................................1520.500.50--------------------------------------------------------------------------0.50--------
...........GACATCCCAGGGGCTGT........................................................................................................................................................................................1720.500.50---------------------------------0.50-------------------------------------------------
................CCCAGGGGCTGTAAGT....................................................................................................................................................................................1620.500.50--------------0.50--------------------------------------------------------------------
................................................................................GGTGGAGGGTGGGCTGGG..................................................................................................................1860.330.33---0.17---------------------------------------------------------------------------0.17---
..............................GTGCCAACATGACTGTG.....................................................................................................................................................................1760.330.33---0.33-------------------------------------------------------------------------------
.................CCAGGGGCTGTAAGT....................................................................................................................................................................................1540.250.25-----------------------------------------------------------------------------0.25-----
...............................TGCCAACATGACTGTG.....................................................................................................................................................................1660.170.17------------------------------------------------------------------------------0.17----
...................AGGGGCTGTAAGTGC..................................................................................................................................................................................1560.170.17------------------0.17----------------------------------------------------------------
.................................................................................................GCTTGTAGAAGTCTG....................................................................................................1580.120.12---------------------------------------------------------------------------------0.12-
..................................................................................TGGAGGGTGGGCTGGGC.................................................................................................................1780.120.12--------------------------------------------------------------------------------0.12--

Antisense strand
CCAGCTTCCCTGACATCCCAGGGGCTGTAAGTGCCAACATGACTGTGAAGGTAAGAGTTCTAGATGGGTAGAAACTGACCGGTGGAGGGTGGGCTGGGCTTGTAGAAGTCTGTACCCAGGGGAGCCCCTCACACGCTTCTGCTATGTTTTTATCATTCTTAGGGCCAGAGTGAAGACCCTGGCTCCCTCCTTTCCTTGTTCCGGCGGCTGAG
......................................................(((.(((((...........((.(((.......))).))))))))))...............................................................................................................
..................................................51.................................................102............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR553575(SRX182781)
source: Kidney. (Kidney)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM956925PAZD5SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191527(GSM715637)
128genomic small RNA (size selected RNA from . (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038862(GSM458545)
MM472. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.............................................................................................CTGGGCTTGTAGAAGGATC.................................................................................................... 191.000.00------------------------1.00----------------------------------------------------------
.................................................................................................................................................................................GAAAGGAGGGAGCCAGG.................. 1760.330.33---------------------------------------------------------------------------0.33-------